Life Sciences Commons^™

A Risk Analysis Of Microplastic Consumption In Filter Feeders, Sheri Rahman

HCNSO Student Capstones

Microplastics (plastic particles < 5 mm) pose a serious threat to marine organisms, as researchers have documented such particles in the gut contents of numerous species. In particular, filter feeders are at risk of consuming microplastics because they may accidentally consume the particulates when feeding or they may prey on species that have already consumed them. The goals of this research were to evaluate the risks that different filter feeders face in regards to microplastic consumption through the analysis of the calculated Microplastic Consumption Rates for numerous species of filter feeders. Factors that could potentially affect this risk were also considered, including ocean basin, environment type, salinity, life stage, IUCN status, and filtration technique. Initial analysis showed that body size greatly impacted a species’ risk of microplastic consumption and further tests were completed to evaluate overall microplastic contamination for each species. Microplastic consumption and microplastic contamination values were evaluated and analyzed to determine which filter feeding species were most at risk of experiencing ecological effects from microplastic pollution. From a resource management perspective, this research highlights the filter feeding species most at risk, contributing to the development of more effective plastic waste management policies.

Arctic Thaw: Environmental Exploitation For Economic Profit, Stephen F. Moulton

HCNSO Student Capstones

“Arctic Thaw: Environmental Exploitation for Economic Profit,” is a comprehensive, interdisciplinary assessment of Arctic climate change (CC) impacts. Arctic CC alters the regions’ temperature, annual ice cover, and sea levels. This alteration influences the global economy through enriched international trade and fossil hydrocarbon extraction developments. This capstone examines the Arctic’s response to CC through economic statistical analysis, tracking relative sea-level (RSL) trends, as well as performing hydrographic and modeling reviews. The Northern Rim Countries (NRCs) economic analysis assesses potential CC and GSLR impacts by applying statistical techniques to calculate its effect on each country’s gross domestic product (GDP). The tidal …

Spatial And Temporal Trends Of Southeastern Florida's Octocoral Comunity, Alexandra Hiley

HCNSO Student Theses and Dissertations

In the Caribbean, local and global stressors have driven significant declines in scleractinian coral cover up to 80% in only three decades. Following these declines, phase shifts in benthic community composition have been reported. Shifts towards macroalgal dominance has been the most widely observed case, however, shifts towards octocoral and sponge dominance have also been reported. In Florida, USA, the Florida Reef Tract is an extensive barrier reef system that contains diverse assemblages of corals, sponges, fish, and other taxa. The Southeast Florida Reef Tract (SEFRT) within the Southeast Florida Coral Reef Conservation Area is the northern portion of this …

Sargassum Infauna Community Structure In The Florida Straits And Gulf Stream, Dayna S. Hunn

HCNSO Student Theses and Dissertations

Community structure of Sargassum-associated organisms was examined from 11 sampling locations in the Florida Straits and Gulf Stream from May—September 2018 using a combination of modified shrimp trawls and dip nets. A total of 5413 organisms were collected from Sargassumhabitat representing 14 species from 10 families. A core group of organisms (Platynereis dumerilii, Litiopa melanostoma, Portunus sayi, Portunus spinimanus, Leander tenuicornis, and Latreutes fucorum) were found throughout the entirety of the geographic range surveyed. This core community was not found to vary significantly with increasing distance to shore (P=0.217) and latitude …

Characterization Of Bacterial Communities In Biscayne Bay Through Genomic Analysis, Eric Fortman

HCNSO Student Theses and Dissertations

Biscayne Bay is a shallow oligotrophic estuary in Southeast Florida. Channelization of rivers, and dredging of canals has greatly altered the historical flow of fresh water into the bay. This, coupled with the rise of a sprawling urban & suburban development, has greatly increased the nutrient load in the bay. This study examined the bacterial community at 14 stations throughout Biscayne Bay —6 stations were located at the mouths of canals; 1 upstream-canal station; 6 stations in the center of the bay; and one ocean influenced station, located near the entrance to the bay. One liter, surface water samples were …

Inferred Function And Dynamics Of Microbial Communities From The Northern Gulf Of Mexico, Deepesh Tourani

HCNSO Student Theses and Dissertations

Microbial communities, or microbiomes, are the major drivers of global biogeochemical cycles, acting as primary producers and decomposers across the water column in the oceans. Thus, they reflect changes in physicochemical properties and nutrient composition of the ocean. However, this correlation between ecological changes and the function of marine microbiomes is poorly understood. Large-scale oceanic events such as the bottom-water oxygen-depleted zone (i.e., “dead zone”) and the Deepwater Horizon oil spill in the Gulf of Mexico (GoM) render the ecosystem fragile. These events decrease survival rates of pelagic and coastal macrofauna and affect the biodiversity of the region. As part …

An Analysis Of The Potential Toxicological Effects Of Marine Plastics And Associated Organic And Inorganic Toxic Compounds On Six Commercially Significant Fishery Species, Nicole Marie Jackson

HCNSO Student Capstones

Marine plastics are a global issue which has garnered significant support for mitigation efforts in recent history. Research on the prevalence of plastic polymers in the marine environment has also come to the forefront of the scientific community, however studies on the toxicological impacts of their presence remains to be a little studied matter to date. In this study an intensive critical review of existing data was conducted to compile profiles (including: stability ranks, sorption capacities, organic and inorganic toxic constituent concentrations, bioaccumulations scores per constituent, biomagnification scores per constituent, and totaled threat scores out of five) for the three …

Reconstruction Of Northeastern Pacific Ocean Holocene Production Using Marine Mammal Archaeofauna, Andrea M. Traffichini

HCNSO Student Theses and Dissertations

Changes in marine production play a key role in determining the trophic structure of the northeastern Pacific Ocean. This is a region of great environmental fluctuations due to modern, historical, and paleo-environmental variability recorded throughout the Holocene. These fluctuations are recorded in the bone collagen of the marine mammals that reside in these waters. Marine mammal remains from four previously excavated archaeological deposits on Unalaska Island, Alaska are used as a proxy for marine production changes throughout the Holocene (4,500 BP to 350 BP). Historic and modern samples from museum collections, subsistence harvests, and previously published data provide a distinct …

Spatial And Temporal Trends In The Xestospongia Muta (Giant Barrel Sponge) Population On The Southeast Florida Reef Tract, Alanna D. Waldman

HCNSO Student Theses and Dissertations

Xestospongia muta, the giant barrel sponge, is a key component of coral reef benthic communities in Southeast Florida and the Caribbean. Xestospongia muta increases habitat complexity and stability, and filters large volumes of water, enhancing water quality and facilitating nutrient cycling. Therefore, it is important to investigate trends in the X. muta population on Southeast Florida reefs in response to anthropogenic stressors, changing environmental conditions and acute disturbances and how these events affect its ecological role in the benthic community. This study identified trends in X. muta population density, volume, and size class distribution over time and across reef …

A Characterization Of A Southeast Florida Stony Coral Assemblage After A Disease Event, Nicole K. Hayes

HCNSO Student Theses and Dissertations

Coral reefs have declined globally due to anthropogenic stressors increasing the frequency and severity of bleaching and disease events. In 2014, a stony coral tissue loss disease (SCTLD) outbreak occurred off the coast of southeast Florida and subsequently spread throughout the region. Data collected by the Southeast Florida Reef Evaluation and Monitoring Project (SECREMP) were used to examine the regional impacts of the disease event on the Southeast Florida stony coral assemblage. A long-term annual monitoring project, SECREMP samples permanent sites along the Southeast Florida Reef Tract (SEFRT) from Miami-Dade County north to Martin County. Analysis of stony coral demographic …

Desperate Coral Larvae? Behavioral Responses To Settlement Cues In Aging Agaricia Agaricites Larvae, Helena Sasha Fulmore

HCNSO Student Theses and Dissertations

The global stressors of ocean warming and acidification, as well as local stressors such as eutrophication, overfishing, and coastal construction, have all contributed to the severe decline in coral populations worldwide. Recovery of coral reefs depends partly on recruitment, which relies on the response of larvae to settlement cues indicative of habitat quality; however, it remains unclear whether recruitment in disturbed areas will be compromised. Specifically, as reefs become more disturbed and dominated by macroalgae, it is important to understand larval behavior in response to changes in habitat quality. In this study, we first assessed the settlement success of newly …

Shallow- Water Hardbottom Communities Support The Separation Of Biogeographic Provinces On The West- Central Florida Gulf Coast, Shelby Eagan

HCNSO Student Theses and Dissertations

Several studies have found separation of biogeographic provinces on the West Florida Shelf (WFS), but the location of this separation differs depending on different organisms with faunal boundaries proposed at Apalachicola, Cedar Key, Anclote Key. Tampa Bay, Charlotte Harbor, Cape Romano, or Cape Sable. Biogeographic boundaries can be gradual over a given space and are often species-specific. Analyses of marine benthic mapping and community characterization of Florida’s West-central coast shallow water (depth) hardbottom habitats indicate a major shift in the benthos across Tampa Bay. Quantitative benthic surveys of 29 sites yielded a total of 4,079 individuals of nine stony coral …

Timing And Potential Drivers Of Symbiont Selection In The Early Life Stages Of The Massive Starlet Coral Siderastrea Siderea, Sarah G. Koerner

HCNSO Student Theses and Dissertations

The ability of corals to build reefs can be attributed to their relationship with single-celled algae of the familySymbiodiniaceae.Through the process of photosynthesis, these algae can provide their coral hosts with over 90% of their daily energy requirements. Most coral species acquire multiple species of symbionts from the surrounding water during their larval stage or immediately after settling. However, over time, the coral will select a dominant symbiont speciesthat can depend on the local environment. Until this study, the size or age of the coral at which this transition from multiple Symbiodiniaceaespecies to one dominant species occurs has remained …

Optimizing Lighting Regimes For Rearing Orbicella Faveolata And Acropora Cervicornis Recruits, Paul D. Kreh

HCNSO Student Theses and Dissertations

Coral reef decline worldwide has led to the need for coral reef restoration. The use of sexual reproduction in restoration efforts is required to increase genetic diversity; however, the procedures for rearing newly-settled coral recruits ex situ still need to be optimized. Recruits initially require low light irradiance, but it is unclear when higher irradiances are required to enhance growth and survival. Here we determined the optimal light regime for Orbicella faveolata and Acropora cervicornis recruits. Newly settled recruits were reared under treatments with varied rates of increasing irradiance (after reaching 5 weeks of age), and their survival, growth, and …

Microbial Analysis Of Surfactant-Associated Bacteria In The Sea Surface Microlayer And Remote Sensing Of Associated Slicks, Georgia Parks

HCNSO Student Theses and Dissertations

The sea-surface microlayer (SML) is the boundary layer at the air-sea interface where many biogeochemical processes occur. Many organisms (e.g., bacteria) produce surface active agents (surfactants) for life processes, which accumulate in the SML and dampen short gravity-capillary waves, resulting in sea surface slicks. Synthetic aperture radar (SAR) is capable of remotely sensing these features on the sea surface by measuring reflected backscatter from the ocean surface in microwaves. This study coordinates SAR overpasses with in situ SML and subsurface (SSW) microbial sample collection to guide subsequent analysis after 16s rRNA sequencing on the Illumina MiSeq. In April …

A Review Of The Global Commercial Cephalopod Fishery, With A Focus On Apparent Expansion, Changing Environments, And Management, Corey Clark

HCNSO Student Capstones

Cephalopods are both important predators and prey in many marine environments and important fishery resources in many countries. The global fishery has expanded almost continuously from landings of 580,000 metric tonnes in 1950 to over 4 m.t. in 2007. Cephalopods are ecological opportunists with highly plastic biological characteristics and varied population dynamics. Nearly all commercially harvested species are short-lived and can reproduce quickly, enabling them to evolve more rapidly under high selection pressure relative to many fish competitors and predators. As a result, they may have the biological means to be successful under conditions of long-term global climate change. This …

Outplanted Acropora Cervicornis Enhances The Fish Assemblages Of Southeast Florida, Ellen Dignon Goldenberg

HCNSO Student Theses and Dissertations

Acropora cervicornis, commonly known as the staghorn coral has historically been a major contributor to reef structural complexity, providing habitat for many functionally important fish species throughout Florida and the Caribbean. Unfortunately, due to disease, bleaching, and local anthropogenic stressors, A. cervicornis populations have suffered drastic declines that have negatively impacted associated reef fish populations. In order to promote recovery, A. cervicornis fragments can be cultivated in nurseries and outplanted back onto reefs. This practice can effectively increase A. cervicornis abundance, but the long-term effects on local fish assemblages, and specifically functionally important grazing fishes, has not been assessed. …

Analysis Of "Observer Effect" In Logbook Reporting Accuracy For U.S. Pelagic Longline Fishing Vessels In The Atlantic And Gulf Of Mexico, Thomas J. Morrell

HCNSO Student Theses and Dissertations

Commercial pelagic longline fishers within the U.S. Atlantic, Gulf of Mexico, and Caribbean are required to report all fishing interactions per each gear deployment to NOAA’s Vessel Logbook Program of the Southeast Fisheries Science Center to quantify bycatch, increase conservation efforts, and avoid jeopardizing the existence of vulnerable species listed under the Endangered Species Act (ESA). To provide additional accuracy, the Pelagic Observer Program (POP) of the SEFSC deploys professionally trained observers on longline vessels to produce a statistically reliable subset of longline fisheries data. A comparison of self-reported (“unobserved”) datasets versus observer-collected (“observed”) datasets showed a general consistency for …

Nutrient Concentrations And Effects On Mill Run From Residential, Urban, And Industrial Stormwater Contamination, Melissa Carver

HCNSO Student Theses and Dissertations

Nutrients are introduced into the waters of the Commonwealth of Pennsylvania through various methods, mainly through point and non-point sources. Non-point sources would include agricultural means however, there are often other non-point sources that are often overlooked. Water runoff from stormwater is an important contributor to pollution entering various watersheds. Data was collected at 4 locations (the initial point of reference, residential, urban, and industrial) on Mill Run and 2 locations on Woodcock Creek, through surface water collection methods in dry and wet weather. Nitrate, Nitrite, Total Phosphorus, and Total Nitrogen were among the data collected. Total Phosphorus had an …

Determining How Risk Effects Predator-Prey Interactions Of Marine Communities In The Nearshore Environment Of South Bimini, The Bahamas, Kendall Brancart

HCNSO Student Theses and Dissertations

Predators often have strong top-down effects on ecosystems and are considered a priority for conservation and management. Predator activity can influence prey distribution, abundance, and foraging behaviors and are likely to influence habitat by impacting ecological and environmental characteristics as well as presence of competitor species. There are knowledge gaps of the functional diversity of fish assemblages, non-consumptive predator effects, and environmental effects on fish assemblages. With this study, effects of top marine predators, such as sharks and great barracuda, on diversity and abundance of prey communities were examined in putative low (north side of South Bimini = lagoon) and …

The Sedimentology Of Cay Sal Bank - An Incipiently Drowned Carbonate Platform, Luis Ramirez

HCNSO Student Theses and Dissertations

Sediment on Cay Sal Bank (CSB) is characterized by its coarse-grain size, poor sorting, predominance of skeletal fragments, and relatively depleted d¹⁸O isotope values. CSB is an incipiently drowned platform in close proximity to the Great Bahama Bank (GBB), a carbonate platform which is not incipiently drowned and characterized by fine-grained, non-skeletal sediment. The GBB has locally well-developed oolitic grainstone facies and coral reef margins, which are both lacking on CSB. Platform-top water depths on the GBB are typically 10 m or less, but CSB depth ranges between 7 and 30 m. CSB is devoid of mud, whereas …

Effects Of Deposited Sediment And Turbidity On Survival And Growth Of Orbicella Faveolata Recruits, Morgan Stephenson

HCNSO Student Theses and Dissertations

Corals are frequently exposed to elevated turbidity and deposited sediment caused from coastal construction, dredging, and/or beach renourishment. This study addresses the effects of turbidity and deposited sediment on the survival and growth of newly settled and 6-week-old Orbicella faveolata recruits and disentangles the effects of turbidity and deposited sediment. We conducted two experiments in which newly settled coral recruits were reared in one of ten different turbidity and deposited sediment treatments for five weeks (0 NTU/ 0 mg cm^-2, 3.4 NTU/ 0 mg cm^-2, 8.2 NTU/ 0 mg cm^-2, 16 NTU/ 0 mg …

Optimizing Restoration Site Selection Along The Florida Reef Tract For The Coral Species Acropora Cervicornis And Acropora Palmata, Samantha King

HCNSO Student Theses and Dissertations

The decline of Acropora cervicornis and Acropora palmata populations and consequent listing as endangered species has prompted the need for restoration. Since financial resources are limited, optimal sites for restoration should not only be environmentally suitable for outplant survival, but also have a greater capacity to replenish surrounding reefs with larvae. However, in Florida coral larval dispersal patterns and reef connectivity remain poorly studied. Here, we measured long term larval survival and competency of A. cervicornis to calibrate a high resolution (100m) biophysical larval dispersal model of Acropora in the Florida Reef Tract (FRT). This model revealed that there is …

Assessment Of Heavy Metals In Subsistence-Harvested Alaskan Marine Mammal Body Tissues And Vibrissae, Pilar M. Ferdinando

HCNSO Student Theses and Dissertations

The coastal, indigenous communities around Alaska have subsisted on marine animals for generations, often focusing on large apex predators such as seals, sea lions, and whales. Three species of pinnipeds (harbor seal, Steller sea lion, northern fur seal) and the northern sea otter have all undergone significant population declines since the 1970s, some regions more than others. Archived vibrissae (whiskers) and body tissues from these four species were available from the Bering Sea and throughout the Gulf of Alaska from the 1990s and early 2000s. Tissues from these species are exceedingly difficult to obtain; thus, the archived tissues provided a …

A Comparison Of Circle And J Hook Performance Within The Grenadian Pelagic Longline Fishery, Anthony G. Burns

HCNSO Student Theses and Dissertations

The development and adaptation of gear technologies to local fisheries has been a management-oriented research strategy commonly used to mitigate the ecological effects of pelagic longline (PLL) gear on bycatch species. Grenada’s PLL fishery primarily targets yellowfin tuna, however while minimal, their bycatch of blue marlin and white marlin exceeds the Total Allowable Catch (TAC) allowed by the International Commission for the Conservation of Atlantic Tunas (ICCAT). A switch to circle hooks may benefit these nontargeted, bycatch species by reducing catch rates and haulback mortality, as well as increasing post-release survival. To determine differences in performance, assessments of 16/0 circle …

The Association Between Stomach Fullness And Vertical Migration Behavior In Deep-Pelagic Crustaceans And Fishes In The Gulf Of Mexico, With Notes On Microplastic Ingestion, Ryan P. Bos

HCNSO Student Theses and Dissertations

This thesis presents: 1) the first statistically rigorous support for the longstanding hypothesis that state of satiation modifies diel vertical migration patterns of deep-sea micronektonic crustaceans and fishes; and, 2) the first assessment of microplastic ingestion by deep-pelagic micronekton in the Gulf of Mexico and Straits of Florida. Deep-sea pelagic crustaceans and fishes significantly contribute to abundance and biomass of pelagic ecosystems, are frequently consumed by commercially valuable fishery species, and serve to transport both nutrients and pollutants between shallow and deep waters. The results presented herein will be valuable for assessing risk associated with potential biomagnification of plastic through …

Factors Contributing To The Success Of Restored Oyster Reefs In The Choptank River Of The Chesapeake Bay, Virginia, Tara L. Bardar

HCNSO Student Capstones

Populations of Crassostrea virginica, the Eastern oyster, have been declining since the late 1800s. While overharvesting is the primary cause of decline, the Eastern oyster is also facing the threat of disease and habitat loss. As oyster populations decline, habitat suitable for oyster spats declines as well, as these prefer to settle on the shells of other oysters that have formed reefs. Knowing this, oyster restoration projects have been focused around testing methods that will increase recruitment of spat and allow oyster reefs to form. A current and ongoing restoration project in the Choptank River of the Chesapeake Bay, …

Comparisons Of Five Dna Repair Pathways Between Elasmobranch Fishes And Humans, Lucia Llorente

HCNSO Student Theses and Dissertations

Although DNA repair capacity has been correlated with lifespan in terrestrial vertebrate species, it remains unknown how evolutionarily conserved the process is across all vertebrate taxa. In particular, chondrichthyan fishes have lifespans that range from 3-350 years and they are evolutionarily separated from modern humans Homo sapiens by approximately 400 million years. We hypothesized that chondrichthyan fishes would show significant homology in nuclear excision repair (NER) genes with humans, and that the expression of NER genes will correlate with the lifespan of the respective assessed species. For this study, DNA repair gene homology and expression was performed on the nurse …

Gene Ontology-Guided Force-Directed Visualization Of Protein Interaction Networks, James Lowell King

CCE Theses and Dissertations

Protein interaction data is being generated at unprecedented rates thanks to advancements made in high throughput techniques such as mass spectrometry and DNA microarrays. Biomedical researchers, operating under budgetary constraints, have found it difficult to scale their efforts to keep up with the ever-increasing amount of available data. They often lack the resources and manpower required to analyze the data using existing methodologies. These research deficiencies impede our ability to understand diseases, delay the advancement of clinical therapeutics, and ultimately costs lives.

One of the most commonly used techniques to analyze protein interaction data is the construction and visualization of …

Citationally Enhanced Semantic Literature Based Discovery, John David Fleig

CCE Theses and Dissertations

We are living within the age of information. The ever increasing flow of data and publications poses a monumental bottleneck to scientific progress as despite the amazing abilities of the human mind, it is woefully inadequate in processing such a vast quantity of multidimensional information. The small bits of flotsam and jetsam that we leverage belies the amount of useful information beneath the surface. It is imperative that automated tools exist to better search, retrieve, and summarize this content. Combinations of document indexing and search engines can quickly find you a document whose content best matches your query - if …