Life Sciences Commons^™

Lake Mead National Recreation Area Monitoring And Evaluation Of Sensitive Wildlife: Quarterly Progress Report, Period Ending December 31, 2009, Margaret N. Rees

Wildlife Monitoring

Project 1. Relict Leopard Frog Monitoring, Management, and Research

• All milestones and deliverables are on schedule
• Fall surveys at all sites have been completed
• Mark-recapture surveys scheduled for fall were completed
• Short-term habitat improvements at two sites were conducted
• RLFCT meeting was hosted
• Draft annual report was written and presented at the RLFCT meeting

Project 2. Bald Eagle Winter Monitoring and Evaluation

• All milestones and deliverables are on schedule
• An annual project review presentation was given to Clark County
• A draft final report was written and submitted to Clark County
• All data for this project was transferred to the County …

Joint Fire Science Program – Lake Mead National Recreation Area Revegetating Burned Arid Lands: Identifying Successful Native Species Using Trait And Competition Analysis: Quarterly Progress Report, Time Period: October 1 — December 31, 2009, Margaret N. Rees

Fire Science

• Article accepted for publication in Journal of Arid Environments.

• Recharged irrigation gel packs for outplanting and watered seed plots at Goodsprings site.

• Completed full year of seed granivory trials at Goodsprings site.

• Presented information on this Task Agreement to 4th International Fire Ecology and Management Congress.

• Maintained nursery plots and added installment of nitrogen treatment.

Mojave Applied Ecology Notes Fall 2009, Tom Monaco, Scott R. Abella, Amber Lee, James E. Deacon

Mojave Applied Ecology Notes

USDA working to manage invasive annual grasses, effects of heat and smoke on red brome soil seed bank, how burial depth and substrate affect germination of Sahara mustard and red brome, environmental effects of the southern Nevada groundwater project

Lake Mead National Recreation Area Vegetation Monitoring And Analysis: Quarterly Progress Report, July 1, 2009 To September 30, 2009, Margaret N. Rees

Vegetation Monitoring

Executive Summary

• Weed Sentry staff surveyed over 55 miles and 311 acres (most of which was conducted by foot) this quarter.
• Planning for future Brassica tournefortii research projects has been implemented through collaboration between PLI and NPS staff.
• Preliminary results from ongoing Brassica tournefortii projects indicate little effect of disturbance on abundance of the species, but, as expected, the species benefitted with increased water availability
• Rare plant data monitoring and data entry for this season is complete.
• Pre-planning activities for the upcoming Northshore Road restoration plantings and evaluation were initiated.
• Gypsum restoration research is ongoing, data are being analyzed and …

Heat And Smoke Effects On Red Brome Soil Seed Banks, Scott R. Abella, E. Cayenne Engel

Public Policy and Leadership Faculty Publications

Management of exotic plants that are annuals entails understanding and managing their soil seed banks. We completed a study of the influences of heat and liquid smoke on red brome (Bromus rubens) soil seed banks collected from Red Rock Canyon in southern Nevada as part of a collaborative fire effects monitoring effort with Bureau of Land Management - Las Vegas. We collected the samples from the 2005 Loop Fire, where we observed in a monitoring field study that exotic grasses such as red brome were relatively sparse in the first 2-3 years (which were during a dry period) following the …

Unlv Magazine, Matthew K. Jacobsen, Holly Ivy De Vore, Lisa Arth, Cate Weeks, Greg Lacour, Tony Allen, Afsha Bawany, Barbara Cloud, Gian Galassi, Phil Hagen, Karyn S. Hollingsworth, Michelle Mouton, Erin O'Donnell

UNLV Magazine

No abstract provided.

Venn, A Tool For Titrating Sequence Conservation Onto Protein Structures, Jay Vyas, Michael R. Gryk, Martin R. Schiller

Life Sciences Faculty Research

Residue conservation is an important, established method for inferring protein function, modularity and specificity. It is important to recognize that it is the 3D spatial orientation of residues that drives sequence conservation. Considering this, we have built a new computational tool, VENN that allows researchers to interactively and graphically titrate sequence homology onto surface representations of protein structures. Our proposed titration strategies reveal critical details that are not readily identified using other existing tools. Analyses of a bZIP transcription factor and receptor recognition of Fibroblast Growth Factor using VENN revealed key specificity determinants. Weblink: http://sbtools.uchc.edu/venn/.

Lake Mead National Recreation Area Monitoring And Evaluation Of Sensitive Wildlife: Quarterly Progress Report, Period Ending September 30, 2009, Margaret N. Rees

Wildlife Monitoring

Project 1. Relict Leopard Frog Monitoring, Management, and Research

• All milestones and deliverables associated with this MSHCP project are on schedule
• Mark-recapture surveys scheduled for fall have been initiated
• Two potential sites for translocations were visited to assess water availability
• Coordination continues on an upcoming translocation

Project 2. Bald Eagle Winter Monitoring and Evaluation

• All MSHCP milestones and deliverables are on schedule
• An annual project review presentation was given to Clark County

Project 3. Peregrine Falcon Monitoring and Evaluation

• This MSHCP project is on schedule for all milestones and deliverables
• Monitoring of Peregrine falcon 2009 breeding activities has been completed …

Joint Fire Science Program – Lake Mead National Recreation Area Revegetating Burned Arid Lands: Identifying Successful Native Species Using Trait And Competition Analysis: Quarterly Progress Report, Time Period: July 1 — September 30, 2009, Margaret N. Rees

Fire Science

• Weighed biomass for competitive hierarchy study.
• Completed more seed granivory trials at Goodsprings.
• Monitored and maintained nursery plots.
• Submitted revised article to Journal of Arid Environments.

Limnological Assistance For The Lake Mead National Recreation Area In Meeting The Challenge Of The Water 2025 Initiative: Quarterly Report, Period Ending September 30, 2009, Margaret N. Rees

Limnological Studies

Project 1: Two advisory team meetings were attended this year; technical input was provided as appropriate; and summaries were prepared and delivered to Kent Turner. The SCOP Selenium Management Plan has been reviewed with two reports provided.

Project 2: Whitepapers on the carp die-off due to Koi Herpes Virus (KHV) and on lead-base paint use on launch ramps were finalized and delivered to Mr. Turner.

Project 3: The Interagency Monitoring Action Plan (I-MAP) for Quagga Mussels has been approved for implementation.

Project 5: Seven articles based on presentations at the Lake Mead Science Symposium have been approved by the technical …

Interagency Management Action Plan (I-Map) For Quagga Mussels, David Wong, Shawn Gerstenberger

Public Lands Institute Publications

Following the discovery of quagga mussels in Lake Mead, a variety of agencies, including National Park Service (NPS) Lake Mead National Recreational Area (LMNRA), Bureau of Reclamation (USBR), Southern Nevada Water Authority (SNWA), Nevada Department of Wildlife (NDOW), U.S. Fish and Wildlife (USFWS), Clean Water Coalition (CWC), and U.S. Geological Survey (USGS) have set up monitoring programs to evaluate and gain information to help minimize the impacts or potential impacts of quagga mussels to their facilities and lake ecology. Current monitoring activities and anticipated environmental impacts are depicted in Figures 1 and 2. While the agencies have worked closely and …

Stationary Phase Mutagenesis In Bacillus Subtilis: The Interaction Between Transcription And Error-Prone Replication In Conditions Of Stress, Mary Girard, Eduardo Robleto

Undergraduate Research Opportunities Program (UROP)

While under conditions of stress, non-dividing cells may acquire beneficial mutations. This is referred to as stationary phase mutagenesis, or adaptive mutagenesis. Previous research has shown that actively transcribed genes and those under selective pressure are prone to mutations that confer escape from non-dividing conditions. Accordingly, strains lacking transcription factors have shown a drastically lower number of mutations that confer escape while under amino acid starvation than those observed in the wildtype background. Also, error-prone DNA polymerases are known to be active in cells under stress and it has been shown that strains lacking an error-prone DNA polymerase display reduced …

Long Distance Microbial Transport In Air: Global Change Implications, Bradley J. Davey, J. C. Bruckner, Jenny C. Fisher, Duane P. Moser

Undergraduate Research Opportunities Program (UROP)

The first manifestations of global change will most likelv be observed in the Earth's atmosphere. Changing wind patterns, for example, may effect the long distance dispersal of microor-g anisms. The overall objective of this research is to correlate molecular assessments of microbial community structure from cloud water and snow samples, obtained from DRI's Storm Peak Laboratory atop Mt. Werner in Colorado, with atmospheric data and calculated air mass back trajectories. Our activities for summer of 2009 will be a focused proof-of-concept exercise to determine if intact microbial DNA and viable cells can be recovered from cloud water and alpine snow …

Pdest Fg12-Cmv Dsred Vector, Jarod Wolffis, Sheri L. Holmen

Undergraduate Research Opportunities Program (UROP)

Melanoma is the most rapidly increasing malignancy among young people in the United States. If detected early, the disease is easily treated; however, once the disease has metastasized it is largely refractory to conventional therapies and is associated with a high mortality rate. The development of human cancer from a pre-malignant primary tumor to a metastatic lesion that develops at secondary sites is thought to be a multi-step process, requiring many genetic and epigenetic events that provide a growth advantage to cells. It is still unclear which of the many genetic changes in human cancers are required for metastasis. Therefore, …

Attempts To Cultivate Bacteria From Deep Subsurface Aquifers And Mountaintop Plant Communities, Eric D. Hughes, J. C. Bruckner, Duane P. Moser

Undergraduate Research Opportunities Program (UROP)

In the late 1990s, the limits of life were pushed even further when microorganisms were discovered thriving 2.5 km below the surface of the Earth in deep South African gold mines. These very simple communities were dominated by a single species of bacteria from within the phylum, Firmicutes. Desulforudis audaxviator remains unique to a sizeable portion of the South African deep subsurface. At depths below 2.5km, it comprises well over 99% of all organisms present, which presents a unique circumstance in which the environment has provided a natural pure culture. From this naturally occurring pure culture, environmental genomics was applied …

The Role Of Rpoe In Stationary Phase Mutagenesis In Bacillus, Turquoise C. Alexander, Eduardo A. Robleto

Undergraduate Research Opportunities Program (UROP)

Stationary phase mutagenesis is a phenomenon whereby random mutations are generated in non-dividing cells. In order to understand how these mutations arise, we use Bacillus subtilis, a gram positive rod-shaped model organism. It is hypothesize that increased transcription promotes stationary phase mutagenesis in this organism. We therefore examined the role of rpoE, a gene that encodes RNA polymerase ! subunit and proposed to influence efficiency of transcription. To this end, we will first generate a strain bearing a deletion in the rpoE gene. In order to determine if this gene is important for mutagenesis, we will examine the accumulation of …

Point And Nonpoint Source Analysis Of Nutrients, Metals, And Pathogens In The Sediment And Water Column In Las Vegas Wash, Christine Simmons, Kumud Acharya

Undergraduate Research Opportunities Program (UROP)

Formerly an ephemeral watercourse, Las Vegas Wash is now a perennial system due to urban runoff and wastewater treatment plant (WWP) effluent. Las Vegas Wash flows into Lake Mead, where the discharge point is only a few miles upstream of Las Vegas’ main water intake. This small water cycle establishes the necessity to evaluate water quality especially due to non point sources pollution, wherein my research lies. Several points along Las Vegas Wash upstream and downstream of WWP have been chosen to represent different landuse types such as commercial, residential, wastewater treatment plants, etc. At each location, parameters including arsenic, …

The Role Of Recn In Stationary Phase Mutagenesis In Bacillus Subtilis, Lauren E. Johnson, Katherine R. Ona, Eduardo A. Robleto, Ronald E. Yasbin

Undergraduate Research Opportunities Program (UROP)

Here, we examine mutagenic programs that are independent of growth, such aspects of the evolutionary process are novel and have been implicated in the formation of cancers in animal cells and the acquisition of antibiotic resistance in animal pathogens. Adaptive or stationary phase mutagenesis is a genetic program to in increase diversity in cells under conditions of stress whereby cells escape non-dividing conditions. Previous research has shown that recombination functions are required to generate mutations that promote growth in Escherichia coli cells starved for carbon. This project tests the hypothesis that recombination functions are required for the generation of mutations …

Differential Localization Of Icsa And Icsp In The Outer Membrane Of Shigella Flexneri, Robin Herlands, Helen Wing

Undergraduate Research Opportunities Program (UROP)

Our goal is to visualize IcsP on the surface of S. flexneri and determine how its localization changes during growth versus stationary phases. We hypothesize IcsP will be present on the surface of S. flexneri differentially during growth and stationary phases of cell cycle. We hypothesize greater levels of IcsP seen during stationary phase (simultaneous with lower, more unipolar IcsA, due to IcsP mediated cleavage). During growth phase, we expect less IcsP to be present on the surface, and IcsA to be more evenly distributed around the cell surface.

Martian Life Detection With Amino Acid Enantiomers, Ali Jamil, Gaosen Zhang, Henry J. Sun

Undergraduate Research Opportunities Program (UROP)

The Viking mission showed that Martian soil can degrade a heterotrophic medium to carbon dioxide as if live microorganisms were present. The result is considered inconclusive, however, because abiotic oxidants, such as superoxides, may also exist on Mars and would explain the Viking result. One way to resolve this ambiguity is to repeat the Viking experiment with a isomerically pure medium. The consumption of one isomer, either D or L, would indicate biological activity. Indiscriminate destruction of both isomers would indicate abiotic redox processes. This idea was validated for glucose by REU research last summer (Sun et al. 2009). The …

Manipulation Of Foraging Rate In Honey Bees In A Natural Setting, Loann K.L. Larsen, Joyce H. Pang, Andrew Ammons, Michelle M. Elekonich

Undergraduate Research Opportunities Program (UROP)

The accumulation of reactive oxygen species (ROS) and free radicals within tissues creates oxidative stress, causing damage and eventual aging in an organism. Intense activity can increase the level of oxidative stress that occurs within an organism. In honey bees, this activity occurs during foraging flights. To measure levels of oxidative stress resulting from low and high foraging activity, we set up three colonies: a colony with a pollen trap to cause increased foraging, a normal colony (control), and a colony with an artificial waterfall to limit foraging. We counted flights of marked foragers at each colony for 5 to …

The Regulation Of The Icsp Promoter Of Shigella Flexneri By Ryhb, Lia A. Africa, Helen J. Wing

Undergraduate Research Opportunities Program (UROP)

Iron is an essential element in the metabolism of many organisms, including bacteria. In many pathogenic bacteria, the levels of iron present trigger the expression of many virulence genes. In Shigella, a gram-negative bacterium that causes dysentery in humans, the expression of a small regulatory RNA, ryhB, is blocked in the presence of iron. Studies have revealed that ryhB represses virB, a global regulator of virulence genes in Shigella.

The icsP gene is under the direct control of VirB. icsP encodes an outer membrane protease that cleaves a protein necessary for the actin tail assembly of Shigella in vitro. In …

Expression Of An Alternate Splice Form Of Bmi-1 In Multiple Myeloma, Adam Austin, Kristine Veys, Debbie Wong, James Tung

Undergraduate Research Opportunities Program (UROP)

The concept of “tumor stem cells” has garnered much attention in the last few years. Tumor stem cells are believed to exist among a heterogeneous group of cells that constitute a tumor. These tumor stem cells often express genes that are important for stem cell function, cell division, and maintenance of pluripotent state in stem cells. Stem cell or stem cell maintenance genes such as SALL 4 and Bmi-1 are often seen in these cancer cells and contribute to self-renewing divisions and cancer cell survival. In particular, high expression of Bmi-1 (B lymphoma mouse Moloney leukemia virus insertion region), a …

Survival Of Shigella Flexneri In Swimming Pool Water, Monique Gomez, Helen J. Wing

Undergraduate Research Opportunities Program (UROP)

Shigellosis is a disease caused by the pathogenic bacterium Shigella flexneri. The bacterium causes bloody diarrheadiarrhea, fever and abdominal pain. Infections can be and may cause fatal. . The disease may also cause bloody diarrhea and intense intestinal crampings. In the United States, there have been many outbreaks of shigellosis have been traced back to associated with inadequately disinfectedchlorinated public swimming pools and wading pools. These outbreaks of sShigellosis are most commonly seen among small children who play in these pools. . My goal is to determine how well Shigella survives in freshly chlorinated pool water and in pool water …

Germination And Characterization Of Bacillus Anthracis And Bacillus Cereus, Ann Desdemonia Nde-Neh Fowajuh, Ernesto Abel-Santos

Undergraduate Research Opportunities Program (UROP)

Bacillus cereus and Bacillus anthracis are micro organisms found in soil. Normally, only their spores are found in soil. We recently showed that, B. anthracis and B. cereus do not germinate in soil. Thus, how does B. cereus and B. anthracis continue their life cycle if they can not replicate in soil? We hypothesize that B. cereus and B. anthracis spores may germinate in the gut of nematodes. Caenorhabditis elegans was used as our model nematode to investigate this possibility. Subsequently, the goal of our research is to determine the effect of C. elegans on the life cycle of B. …

The Characterization Of Two Diverse Magnetotactic Bacteria: Lems And Mms-1, Ulysses C. Pickard, Paul A. Howse, Dennis A. Bazylinski

Undergraduate Research Opportunities Program (UROP)

Magnetotactic bacteria (MTB) are a diverse group of prokaryotes that biomineralize membrane-bound magnetic crystals known as magnetosomes. The magnetosomes are aligned within the cell and consist of either magnetite (Fe3O4) or greigite (Fe3S4). The biomineralization of magnetosomes consists of several processes including: invagination of the cytoplasmic membrane, iron uptake into the cell and then into the magnetosome membrane vesicle, and crystallization of the mineral phase inside the vesicle. Mam genes control magnetosome biomineralization with most of the genes present in an island called a magnetosome island. Many of the mam genes are conserved between different species of MTB. The genes …

Dna Secondary Structures And Their Contribution To Mutagenesis In B. Subtilis Stationary Phase Cells, Carmen Vallin, Katherine Ona, Chris Ross, Ronald E. Yasbin, Eduardo A. Robleto

Undergraduate Research Opportunities Program (UROP)

It is widely known and accepted that the cause of many mutations in cells are generated during the replication process of actively dividing cells, however more recent research has shown that mutations also arise in non growing conditions, a phenomenon known stationary phase mutagenesis. Much of what is known come from studies in eukaryotic and bacterial models. It is proposed that in nongrowing cells, the process of transcription plays an important role in mutagenesis. I will test the hypothesis that secondary structures formed of DNA generated transcription promote mutagenesis. The sequences transcriptiongenerated structures are speculated to be prone to mutations …

Exploring Diversity Of Nitrate Reducing Thermophiles In Nevada Hot Springs, Jenny Lam, Jeremy A. Dodsworth, Brian P. Hedlund

Undergraduate Research Opportunities Program (UROP)

High rates of denitrification have been measured in Nevada geothermal hot springs, but little is known about the thermophiles that contribute to this activity. We hypothesize that heterotrophic bacteria in the genus Thermus are the most important denitrifiers in the springs. Alternatively, other microorganisms including chemolithotrophs may also be important. To test these hypotheses, several different strategies will be used to try to enrich and isolate nitrate-reducing microorganisms. Isolates will be identified by 16S rRNA gene PCR and sequencing. Subsequently, representative isolates will be chosen for nitrate reductase gene (narG) sequencing and for studies on the kinetics of nitrate reduction …

Role Of Ecdysone Signaling In Fat Body Remodeling, Marsha Kristel Bernardo, N. Bond, Allen G. Gibbs

Undergraduate Research Opportunities Program (UROP)

Climate change is fundamentally connected to animal development and survival, and the life history of an organism must be coordinated with predictable seasonal changes of the environment. Climate change affects the life cycle of plants, a major food source for insects. If photoperiod, the primary environmental queue that insects utilize to determine the proper emergence time, and food availability becomes out of sync, many populations of insects and other animals could be threatened. Understanding animal development can provide insight into this issue and could provide clues that may help the scientific community predict how insect populations may respond to climate …

Baseline Microbial Characterizations Of An Imperiled Aquatic Diversity Hotspot: Ash Meadows National Wildlife Refuge, Jessica Newburn, Jim Bruckner, Jenny C. Fisher, Duane P. Moser

Undergraduate Research Opportunities Program (UROP)

Located in the discharge zone of the Death Valley Flow System, Ash Meadows National Wildlife Refuge is a spring-fed desert oasis and biodiversity hotspot about 90 miles northwest of Las Vegas. These critical wetlands are potentially threatened by groundwater pumping, exotic species invasions, and climate change. Although a major component of the lower food web, very little is known about the microbial makeup of this ecosystem. As a first step towards understanding the microbial and biogeochemical aspects of this system, a detailed molecular-based characterization of microbial communities, baseline chemistry, and physical characteristics of various springs of Ash Meadows will be …