Life Sciences Commons^™

An Investigation Into The Spatial Distribution, Habitat Selection And Resource Usage Of The Red Fox (Vulpes Vulpes) Inhabiting Urban Reserves Within Perth, Western Australia, Michael Thomas Main

Theses: Doctorates and Masters

I attempted to track a population of urban foxes in Kings Park, but due to collar failure, only one collar was retrieved. The GPS telemetry data from this fox produced home range estimates for minimum convex polygon (MCP) and kernel density (KD) of 0.302 km² and 0.331 km², respectively. The fox was predominantly active at night, with a ten-fold increase in movement during nocturnal periods when compared to daytime movements. Roads and man-made tracks were important for facilitating movement of the fox through its home range, with almost 97% of location fixes recorded within 100m of these features. The fox …

Quantifying The Heterogeneity Of The Immunoglobulin G N-Glycome In An Ageing Australian Population: The Busselton Healthy Ageing Study, Alyce Russell

Theses: Doctorates and Masters

The use of immunoglobulin G N-glycomics to study chronic non-communicable disorders and other complex phenotypes emerged following the Human Genome Project. The consortium discovered that most phenotypes were too complex to be explained by genetics alone. Thus, the biological importance of epigenetics was recognised; heritable modifications to gene expression rather than the genome itself. Nglycosylation is a form of epigenetic regulation known as a post-translational modification. It stabilises the immunoglobulin G structure and alters downstream responses elicited by the antibody and is extensively studied as a candidate biomarker in the post-genomic era.

The N-glycosylation of immunoglobulin G itself is complex, …

Tropicalisation Of Temperate Seagrass Meadows In Western Australia: Predicting The Impact Of Tropical Herbivorous Fishes On Temperate Seagrass Meadows, Maria Samsonova

Theses: Doctorates and Masters

Rising sea temperatures through climate change produce shifts in the distribution of tropical species to temperate regions, a process termed “tropicalisation”. The poleward expansion of tropical herbivores into temperate seagrass meadows is predicted to increase grazing pressure and alter ecosystem services and processes in these seagrass systems. This study attempted to examine the effects of tropicalisation on temperate seagrass meadows along the western coast of Australia, where the increasing abundance of tropical consumers such as the herbivorous Siganus fuscescens has already been documented. Through the assessment of fish assemblages in seagrass meadows and the grazing levels on seagrass in 2001 …

Antibiotic Resistance In Gram Negative Bacteria Isolated From Fish Sold In Western Australia, Hannah Kathleen Robinson

Theses: Doctorates and Masters

Background Information The global misuse and overuse of antibiotics in human medicine and the animal production industry is contributing to the development of antibiotic resistance in bacteria. This is a serious threat to modern medicine and public health. Antibiotic resistant organisms can cause severe infections in humans which are difficult to treat, and in some cases impossible to resolve which can lead to premature death. Several studies have been conducted across the globe to assess the use of antibiotics in the seafood industry and the associated health risks, however, limited studies have recently explored this risk in an Australian setting. …

The Value Of Animal Behaviour As A Bio-Indicator Of Restoration Quality, Floyd Holmes

Theses: Doctorates and Masters

Woodland restoration is a complex endeavour, and restoration ecology as a scientific discipline requires constant re-assessments and adjustments if it is to improve outcomes and better provide for biodiversity. The promise of effective restoration is often used to justify destructive processes that affect many of the world’s ecosystems. It is therefore imperative that those promises can be met, which comes down to restoration ecologists’ and land managers’ capacity to predict and facilitate desirable ecological changes in a timely and socio-economically responsible manner. As perspectives have changed, and knowledge has been gained over the past few decades there have been several …

Late Quaternary Dragon Lizards (Agamidae: Squamata) From Western Australia, Julie Rej

Electronic Theses and Dissertations

Fossil Agamidae from Western Australia have been the subject of limited study. To aid in fossil agamid identification, Hocknull (2002) examined the maxilla and dentary of several extant species from Australia and determined diagnostic characters for various species groups. In the study here, fossil agamids from two localities in Western Australia, Hastings Cave and Horseshoe Cave, were examined, grouped, and identified to the lowest unambiguous taxonomic level. Morphometric analyses were conducted to compare morphotypes, and find additional diagnostic characters. From Hastings Cave there were two maxilla morphotypes and three dentary morphotypes. Based on identifications, taxa present at this locality were …

Biodiversity Monitoring Using Environmental Dna: Can It Detect All Fish Species In A Waterbody And Is It Cost Effective For Routine Monitoring?, Lia Smith

Theses: Doctorates and Masters

The challenges associated with environmental monitoring such as the impact on the environment and the financial costs are problems we face when trying to conserve freshwater systems around the world. The need for precise and accurate results that are cost effective is important so that we can achieve our conservation goals.

The overall aim of this study was to explore Next-Generation - metabarcoding for the detection of feral and native freshwater fish species based on the DNA shed by individual organisms into the water column. Cytochrome c oxidase I (COI) primers were developed for this study using DNA from six …

Nocturnal Roost Tree, Roost Site And Landscape Characteristics Of Carnaby's Black-Cockatoo (Calyptorynchus Latirostris) On The Swan Coastal Plain, Candice Le Roux

Theses: Doctorates and Masters

There is limited information on communal roosting in parrot species of Western Australia and other parts of the world. Carnaby’s Black-Cockatoo is an endangered species that forms large nocturnal communal roosts, and for this reason they are an ideal model species to test the characteristics or factors that are associated with roost sites. Known roost sites distributed across the Swan Coastal Plain were identified and selected through the Great Cocky Count project. A minimum of five and maximum of ten individual trees were assessed at 11 roost sites with an overall total of 95 roost trees sampled. I determined the …

Ecology Of Feral Cats Felis Catus And Their Prey In Relation To Shrubland Fire Regimes, Tim S. Doherty

Theses: Doctorates and Masters

Invasive predators are major drivers of global biodiversity loss and their impacts may be worsened by other disturbances such as fire. I examined how the fire history of shrublands influences the ecology of feral cats Felis catus, dingoes Canis dingo and their prey species in Western Australia’s northern Wheatbelt region.

A review of the literature revealed that feral cats inhabit a diverse range of ecosystems worldwide, but are generally recorded most often in habitat types characterised by a mixture of plant growth forms close to ground level. Cat habitat use is influenced by predation/competition, prey availability, shelter availability and …

A Molecular Framework Phylogeny For Ptilotus (Amaranthaceae), Timothy A. Hammer

Biological Sciences Theses & Dissertations

Ptilotus (Amaranthaceae) is an Australian genus with over 100 species, most of which occur in arid Western Australia. Ptilotus has been a taxonomically difficult genus; despite rigorous morphological studies into the genus over many years, previous workers have found it difficult to delimit infrageneric groups due to inconsistent morphological variation. With the goal to establish a phylogenetic framework for the genus, 100 taxa were sampled, including 87 Ptilotus spp., and the ITS nrDNA and matK cpDNA were sequenced. The phylogeny was reconstructed using Bayesian, maximum likelihood and maximum parsimony analyses on separate and concatenated datasets. Morphological characters were assessed and …

Systematics And Biogeography Of The Australian Burrowing Freshwater Crayfish Genus Engaewa Riekk (Decapoda: Parastacidae), Quinton Burnham

Theses: Doctorates and Masters

The overall aim of this study was to explore the systematics and biogeographic patterns of the freshwater crayfish genus Engaewa Riek, a strongly burrowing freshwater crayfish restricted to the coastal corner of south-western Australia (SWA). The genus Engaewa is a Gondwanan relict with great potential as a marker of historical processes, due to its high habitat specificity and low dispersal ability. This study comprises an extensive taxonomic and phylogenetic revision of the genus Engaewa (using both molecular and morphological data), a detailed study of its distribution and uses the knowledge gained to explore biogeographic patterns in the biodiversity hotspot of …

Fate Of Eucalyptus Marginata Seed From Canopy-Store To Emergence In The Northern Jarrah Forests Of Western Australia: Research To Help Improve Regeneration Following Shelterwood Treatment, Jeffrey Cargill

Theses: Doctorates and Masters

The establishment of seedling regeneration is a key process in and indicator of ecologically sustainable forest management. The availability of seed and the creation of a suitable seedbed are recognised as important factors limiting seedling recruitment. A silvicultural method commonly used across northern and eastern jarrah forest blocks is shelterwood cutting. The primary objective of treating jarrah forest to shelterwood is to promote seedling regeneration in areas lacking sufficient advanced growth. Despite the widespread and progressive implementation of the shelterwood method, its application in jarrah forest has shown varying degrees of success.

This thesis sought to investigate and better understand …

The Impact Of Black Swan (Cygnus Atratus) Grazing On The Seagrass Halophila Ovalis In The Lower Swan River Estuary, Gary Choney

Theses: Doctorates and Masters

Grazing is an important ecosystem process, influencing community structure and rates of ecosystem processes. Although grazing on seagrasses is generally considered to be minor in many temperate regions of the world, waterfowl are often considered significant grazers in temperate lagoons and estuaries. This study examined spatial and temporal variation in swan abundance, grazing pressure and the impact grazing has on seagrass. Little is known on how grazing rates vary on larger water bodies in the southern hemisphere at different times of year and whether temporal changes in grazing rates affect the ability of seagrasses to tolerate grazing. The plant response …

Trophic Implications Of Light Reductions For Amphibolis Griffithii Seagrass Fauna, Adam Gartner

Theses: Doctorates and Masters

The ongoing threat of seagrass loss from reduced light availability, coupled with our lack of knowledge of associated trophic responses has motivated this characterization of the flow-on effects of light reductions to Amphibolis griffithii seagrass fauna. Recently, field manipulations of varying light reductions, induced disturbances in a A. griffithii seagrass meadow that have been shown to effect potential food resources and the structural complexity of seagrass habitats for macroinvertebrates. This offered the opportunity to assess the flow-on effects to seagrass for fauna, a topic that has seldom been examined. This study investigated the effects of different light reduction intensity (high: …

A Comparison Of Logging And Fire Disturbance On Biophysical Attributes Of The Northern Jarrah Forest, Alexander W. Watson

Theses: Doctorates and Masters

Ecologically sustainable forest management (ESFM) serves dual purposes: 1) to ensure the conservation of biodiversity, and 2) in production forest (forest managed for the production of timber and woodchips), to maintain an economically viable timber industry in perpetuity. A central axiom of ESFM is that any manipulation of a forest ecosystem should emulate the `natural' disturbance patterns of the forest. This is based on the assumption that forest communities have evolved with endogenous disturbance regimes and will be better able to cope if exogenous disturbance (e.g., logging) remains within natural levels and spatial and temporal bounds of intensity. The objective …

A Comparison Of Seagrass Communities At Varying Proximity To A Low-Density Mussel-Line Aquaculture In King George Sound, Western Australia, John A. Eyres

Theses: Doctorates and Masters

Increasingly mussel-line aquaculture is recognised as a potential threat to seagrass. Sites suitable for mussel-line aquaculture are often in sheltered waters containing seagrass. Despite this; few studies have examined the risk of mussel-line aquaculture to seagrass ecosystems. The objective of this study is to determine how low-density, mussel-line aquaculture might influence the underlying seagrass ecosystem.

Growth Trends And Water Use Efficiency Of Pinus Pinaster Ait. In Response To Historical Climate And Groundwater Trends On The Gnangara Mound, Western Australia, Lindsay Bourke

Theses : Honours

In Western Australia, groundwater accounts for about 57% of Perth's water supply. The majority of this is from the Gnangara Mound, the largest superficial aquifer on the Swan Coastal Plain. Prior to the mid 1970's groundwater of the superficial aquifer reached a semi-steady state, however since this period levels have been steadily falling. This decline coincides with a dramatic change in Perth's climate, groundwater abstraction and maturation of pine plantations. The influence of pine plantations upon groundwater recharge is well understood, however there is paucity of information about groundwater use, in particular whether pines directly access shallow groundwater resources. This …

The Role Of Farm Dams As Refugia For Aquatic Invertebrates In A Salinised Landscape, South Western Australia, Jean-Michel Benier

Theses: Doctorates and Masters

In a salinised landscape farm dams may represent the last truly freshwater surface resource, and therefore provide refuge habitats for the biota of wetlands affected by increasing salinity. One wetland threatened by increased salinity in south-west Western Australia is Lake Toolibin. It is listed as a Wetland of International Importance under the Ramsar Convention in recognition of its high conservation value, and remediation actions to halt (and possibly reverse) further increases in salinity are being undertaken at this wetland. Farm dams act as aquatic refugia if they convey resistance and/or resilience to the biotic communities of a disturbed habitat. This …

Environmental Correlates And Associations Of Tuart (Eucalyptus Gomphocephala) Decline, Todd A. Edwards

Theses: Doctorates and Masters

Tuart (Eucalyptus gomphocephala DC.) is an ecologically and culturally important tree species that grows across a narrow 400 km long coastal belt, from the Sabrina River south of Perth, to Jurien Bay in the north. Unfortunately, Tuart is also a species under considerable threat due to clearing, lack of recruitment and canopy decline. Canopy decline is of particular concern, being increasingly reported throughout the Tuart distribution. Despite this, previous studies of Tuart have generally been limited to localised canopy decline events. This two-phased study firstly involved an assessment of Tuart canopy condition at 46 sites across the species distribution. At …

Investigation Of The Replacement Of Margaret River Hairy Marron Cherax Tenuimanus (Smith) By Smooth Marron C. Cainii Austin, John J. Bunn

Theses: Doctorates and Masters

The Margaret River hairy marron, Cherax tenuimanus (Smith, 1912) (Decapoda: Parastacidae) is critically endangered due to the introduction of the widespread marron, C. cainii Austin, 2002. This project investigates the rapid replacement of C. tenuimanus with studies important to its conservation. The ability to identify correctly in the field C. tenuimanuss, C. cainii and hybrids was investigated by linking morphology and marker allozyme loci. C. tenuimanus was readily identified in the field and errors were conservative; no genetically identified hybrids or C. cainii were field identified as C. tenuimauus during tissue samples collection. A prototype field identification guide has been …

In Vitro Propagation Of Some Western Australian Seagrasses, Julia Wilson

Theses: Doctorates and Masters

The development of a successful protocol for micropropagating seagrass provides a valuable tool for seagrass-restoration programs and a facility to study their biology (especially their physiology). This work reports on some of the culture requirements of some seagrasses that are commonly found in Western Australia: Posidonia coriacea, P. sinuosa, P. australis and Halophila ovalis. The protocol developed for H. ovalis allows very rapid multiplication and sustainable growth of cultures while the protocol developed for Posidonia requires further development. The culture of Posidonia cariacea proved to be problematic however experimental media that provided insights into its culture conditions. The carbohydrate source …

Terrestrial Isopods (Crustacea: Oniscidea) And Biogeographical Patterns From South-Western Australia, Simon L. Judd

Theses: Doctorates and Masters

This thesis examines terrestrial isopod (Crustacea: Oniscidea) diversity and biogeography from south-western Australia, a region already recognised for the exceptional high biodiversity and concentrations of endemic species. A taxonomic investigation of isopods in the Western Australian Museum and material collected systematically as part of this study revealed seventy taxa, sixty of which were considered native species. The thesis provides a comprehensive review of regional taxonomic history and includes a key, complete with a set of forty characters states and taxa, illustrated by a number of photographic plates that are designed for use by specialists and non-specialists alike. Prior to this …

The Recovery Of Birds Through Farmland Revegetation In The Shire Of Goomalling, Western Australia, Rebecca Heath

Theses : Honours

The birds of grazed paddocks, early revegetation (less than three years in age), three to seven year old revegetation, older revegetation (greater than seven years in age) and remnant vegetation were surveyed over the course of one year to determine whether revegetation recovers avian biodiversity in agricultural landscapes. Habitat features that were useful to the birds, and those that were missing from revegetation, were identified in order to broaden the knowledge base of faunal use of farmland revegetation, and aid in the devising of successful revegetation strategies. Notable differences in the abundance and composition of birds were found between the …

The Economic Value Of Tourism And Recreation In Forested Areas Of Western Australia, Rachel Goff

Theses: Doctorates and Masters

In recent years, natural area tourism has been presented as a more profitable, labour intensive and environmentally sound industry than the traditional extractive industries which have resulted in the depletion of primary resources in many countries (Burr, 1995). However, in order for economic returns from tourism to be maintained over a long period of time, investment in resources and infrastructure that support and encourage sustainable tourism and recreation activity in natural areas is required. The key to sustainability is maintaining the capital stock of resources (Garrod & Fyall, 1998; Russell, 2001). In a society driven by economics, resources are allocated …

Do Size Differences Of Juvenile Snapper (Pagrus Auratus) In Two Regions Of Shark Bay, Western Australia, Reflect Different Environmental Conditions, Nadia Tapp

Theses: Doctorates and Masters

Aspects of the population biology of juvenile Pagrus auratus in the western gulf of Shark Bay, Western Australia, were investigated to explore the causes of an observed size difference between 0+ fish (first year of life) in the northern and southern regions of that gulf. Five trawl surveys were conducted in each region of the western gulf, from November 2000 to December 2001, to collect juvenile P. auratus. The 0+ fish from the northern region were found to be consistently greater in length by between 10 and 20mm LCF, than those in the southern region, thereby confirming those observed size …

Foraging Ecology And Habitat Selection Of The Western Yellow Robin (Eopsaltria Griseogularis) In A Wandoo Woodland, Western Australia : Conservation Ecology Of A Declining Species, Jarrad A. Cousin

Theses: Doctorates and Masters

This study examined the foraging ecology and habitat selection of the Western Yellow Robin in Wandoo Woodland at Dryandra Woodland, Western Australia. The foraging ecology component was comprised of an examination of foraging behaviour, perch-use selection and pounce-site characteristics. The habitat selection component was comprised of an examination of habitat characteristics of site occupancy and general nesting ecology. The implications of current management at Dryandra Woodland to the ecology of the Western Yellow Robin are discussed in reference to the findings of the present study. Ground-pouncing was the dominant foraging behaviour throughout all seasons, with dead branches of live subcanopy …

The Effect Of Recreational Fishing On Targeted Fishes And Trophic Structure, In A Coral Reef Marine Park, Mark B. Westera

Theses: Doctorates and Masters

Recreational line fishing is highly targeted at predatory fishes, making them vulnerable to overfishing. These same fishes play a role in trophic structure by regulating prey species. Despite increasing numbers of fishers, few studies have investigated the potential effects of recreational fishing on fish populations and subsequent trophic effects. This project investigated whether there were differences in fishes and benthos between unfished and recreationally fished areas, and whether the removal of targeted fishes influenced trophic structure. The study was conducted at the Ningaloo Marine Park, Western Australia, which had Sanctuary (no-take) and Recreation {recreationally fished) Zones. Data were collected from …

Aspects Of The Taxonomy And Ecology Of The Ground Beetle (Coleoptera: Carabidae) Assemblage Of The Swan Coastal Plain : (With Particular Reference To Habitat Fragmentation And The Quindalup Dune System), Nadine A. Guthrie

Theses: Doctorates and Masters

Long term studies encompassing seasonal variation in abundance and species present, forming base-line phenological data, arc required to understand the responses of the carabid (Ground Beetle) fauna to major habitat changes. In addition, few habitats unaffected by human disturbance remain in Australia, and evaluation of these fauna in these areas is required before further habitat loss occurs. Generally an unknown group of terrestrial predatory invertebrates in Australia, carabids have been the subjects of few ecological studies in this country. This restricts the utility of the Carabidae in environmental or conservation assessment programs in Australia. A study was initiated to assess …

The Reproductive Biology And Temporal Distribution Of A Great Egret And Nankeen Night Heron Colony At The Perth Zoo, Robyn Phillimore

Theses: Doctorates and Masters

A colony of Great Egrets (Ardea alba) and Nankeen Night Herons (Nycticorax caledonicus) has existed at the Perth Zoo in Metropolitan Perth for over 25 years. The colony is particularly significant for the conservation and management of Great Egrets in Western Australia as it is the only colony located in the Metropolitan area. Baseline information of their breeding biology was needed to facilitate the development of management guidelines for the zoo colony. Foraging behaviour was used to highlight specific adaptations in hunting strategies and diet. However, it was not possible to observe foraging Nankeen Night Herons as they forage at …

Time Series Modelling Of The Environmental Factors Affecting The Daily Catch Rate Of Western Rock Lobster, Sukanlaya Srisurichan

Theses: Doctorates and Masters

The western rock lobster fishery is one of the most significant and valuable single species fisheries in Australia and in the world. It generates a gross commercial value of $200-300 million dollars per year for the economy of Western Australia. The impact of environmental factors on the daily catch rate of the western rock lobster is of particular interest to the W.A. Marine Research Laboratories, at the Ministry of Fisheries, Western Australia. Considerable time and effort has been invested into building and developing suitable models to measure such impact on this fishery. While past research has focussed on monthly or …