Life Sciences Commons^™

The Missing Metric: An Evaluation Of Fungal Importance In Wetland Assessments, Megan A. Rúa

Biological Sciences Faculty Publications

To preserve wetland ecosystem function, federal and state agencies have developed assessment procedures to better manage remaining wetland areas. Currently, wetland assessments do not consider microorganisms when determining wetland quality. This is notable, because fungi are often the primary decomposers of organic material and thus important players in nutrient cycling. The objective of this study is to quantify how wetland quality, as measured using the Ohio Rapid Assessment Method (ORAM), relates to fungal community composition. We sampled soils from six depressional emergent marshes in Ohio belonging to each of the three ORAM quality categories, assessed soil physicochemical properties, and recovered …

Vultures And Kites From Marala Wetlands, Zahid Bhatti, Fida Muhammad Khan, Muhammad Asif Gondal

Journal of Bioresource Management

The family Accipitridae consists of approximately 254 known living species that include eagles, hawks, vultures and kites. Forty species from this family are extant in Pakistan, of which 24 are resident. Only six species from the Accipitridae family were observed at Marala Head; Marsh Harrier (Circus aeruginosus), Pariha Kite (Milvus migrans), White-Backed Vulture (Gyps bengalensis), Long-billed Vulture (Gyps indicus), Shikra (Accipiter badius) and Black-Winged Kite (Elanus caeruleus). The highest number of any species from this family observed was of Gyps bengalensis (23) in December. Elanus caeruleus was the …

Berberidaceae From Moist Temperate Forests, Northern Areas, Pakistan, Nafeesa Hanif Qudsia, Kishwar Sultana, Safdar Ali Shah

Journal of Bioresource Management

A quick visit of the protected forests of Banjosa, Dhirkot, Pir Chanasi, Pir Lassura and Tolipir was carried out. Berberidaceae belong to a family also known as the Barberry family (Elpel, n.d.). In Pakistan, there are 3 genera and 22 species belonging to this group (Jafri, n.d.). Species of this family are extensively cultivated due to their aesthetic and medicinal value. In the past, researchers would consider this family to get an idea about the habitat degradation of temperate areas. This study was aimed to produce a comprehensive list of species richness of this family in five National Parks of …

Wildlife Survey Of National Parks To Assess Reptilian Biodiversity, Ajk, Jibran Haider, Inayatullah Malik, Sabiha Shamim

Journal of Bioresource Management

The class Reptilia belongs to phylum Chordata. This group forms a large community of the land vertebrates. However, they remain relatively under-examined. Roll et al. (2017) studied the global distribution of more than 10,000 reptiles. Nearly194 reptilian species have been reported from Pakistan (WWF, n.d.). Five protected parks were studied from February 2008 to May 2010. Dhirkot Nature Reserve (DNR), Banjosa Nature Reserve (BNR), Tolipir National Park (TNP), Pir Chanasi National Park (PCNP) and Pir Lasura National Park (PLNP) were considered. Fifteen species of reptiles were observed in TNP. Ten species of reptiles were recorded from PCNP. Ten species of …

A Preliminary Study On Population Of Some Passeriformes At Marala Head, Zahid Bhatti, Fakhra Nazir, Asad Ghufran

Journal of Bioresource Management

Passerines are perching birds of order Passeriformes representing half of the diversity of birds (Sibley and Monroe, 1990). There are total 6,600 species identified under 140 families declaring Passeriformes as the largest order of birds. Three hundred and thirteen species of Passeriformes were reported by Roberts (1992) from Pakistan but according to check list of birds of Pakistan there are more than 400 species of Passeriformes in Pakistan (Clements, 2019). They have significant ecological importance in an ecosystem and are mostly omnivores except the shrikes which are carnivorous. This study was done to form a preliminary checklist of Passeriformes at …

Factors Affecting Waterfowl Diversity At Wetland Area, Punjab (Pakistan), Zahid Bhatti, Fakhra Nazir, Inayatullah Malik

Journal of Bioresource Management

Different wetlands are being selected through WWF to improve their conditions and to create awareness about their importance in public of Pakistan. The study will help in providing sound basis for the future conservation activities and management of waterfowl population, on sounder footing. The study was conducted at Marala wetlands from October 2000 to September 2001. The State of Jammu and Kashmir lies in the north. Three rivers, i.e., Tawi, Chenab and Manawar Tawi, coming from Jammu and Kashmir, flow into Game Reserve and meet to enter the Head Marala water storage reservoir. At river Jammu Tawi, 58 species of …

Shrews From Moist Temperate Forests Of Azad Jammu And Kashmir, Andleeb Batool, Muhammad Asif Gondal, Jibran Haider

Journal of Bioresource Management

The soricidae family comprises of nearly 23 genera out of which approximately 200 species have been associated with the Eurasian region (IUCN, 1995). A lot of ambiguity surrounds this family, especially where taxonomic classification is concerned; also, not much is known about their geographic location. Five protected parks from Azad Jammu and Kashmir (AJK) were explored for population trend studies of family soricidae. Dhirkot Nature Reserve (DNR) was observed in February, 2008, Banjosa Nature Reserve (BNR) in May-June, 2009, Tolipir National Park (TNP) in April to May, 2008, Pir Chanasi National Park (PCNP) in April to May, 2010 and Pir …

Insect Diversity In Some Rural Areas District Bagh Jammu And Kashmir (Pakistan), Abu Ul Hassan Faiz, Mehboob Ul Hassan, Mikhail F Bagaturov, Ghazal Tariq, Lariab Zahra Faiz

Journal of Bioresource Management

The present study was designed to find species composition and diversity of insects in (Cultivated area, wild area, suburban) existing at different trophic level of food chain in Bagh. The study was conducted from November, 2017 to September, 2018. Fifty-two species of insects belonging to 33 families were recorded. The diversity of insects in all studied area were same but significant difference in density of insects was found.

Phytological Study Of Freshwater Wetland Ecosystem Of Bajwat Area, Zahid Bhatti, Asad Ghufran, Sher Wali Khan

Journal of Bioresource Management

Freshwater wetlands are individual ecosystems that support a variety of wildlife, vegetation and microscopic life. The type of plants that exist in these areas describe the physico-chemical characteristics of their locality and vice-versa. This study was carried out at Marala wetlands in Bajwat Game Reserve. The study found 39 species of higher plants in the areas of the wetland and its associated terrain. The total species were arranged into 5 vegetation types, named on the basis of the dominant plant species, with their own composition of the species and present in different habitat conditions. The vegetative community Phragmites karka constituted …

Iamhappy: Towards An Iot Knowledge-Based Cross-Domain Well-Being Recommendation System For Everyday Happiness, Amelia Gyrard, Amit Sheth

Kno.e.sis Publications

Nowadays, healthy lifestyle, fitness, and diet habits have become central applications in our daily life. Positive psychology such as well-being and happiness is the ultimate dream of everyday people’s feelings (even without being aware of it). Wearable devices are being increasingly employed to support well-being and fitness. Those devices produce physiological signals that are analyzed by machines to understand emotions and physical state. The Internetof Things (IoT) technology connects (wearable) devices to the Internet to easily access and process data, even using Web technologies (aka Web of Things).

We design IAMHAPPY, an innovative IoT-based well-being recommendation system to encourage every …

Genetically Distinct Behavioral Modules Underlie Natural Variation In Thermal Performance Curves, Gregory W. Stegeman, Scott E. Baird, William S. Ryu, Asher D. Cutter

Biological Sciences Faculty Publications

Thermal reaction norms pervade organismal traits as stereotyped responses to temperature, a fundamental environmental input into sensory and physiological systems. Locomotory behavior represents an especially plastic read-out of animal response, with its dynamic dependence on environmental stimuli presenting a challenge for analysis and for understanding the genomic architecture of heritable variation. Here we characterize behavioral reaction norms as thermal performance curves for the nematode Caenorhabditis briggsae, using a collection of 23 wild isolate genotypes and 153 recombinant inbred lines to quantify the extent of genetic and plastic variation in locomotory behavior to temperature changes. By reducing the dimensionality of the …

The Physico-Chemical Environment And Aquatic Biodiversity Of Head Marala Wetland During 2000-2001, Zahid Bhatti, Muhammad Asif Gondal, Andleeb Batool

Journal of Bioresource Management

An ecological study on Head Marala Wetland was undertaken. The study will help in providing sound basis for the future conservation activities and its management, on sounder footing. The Marala wetlands in Bajwat area included river Jammu Tawi, river Chanab and river Manawar Tawi were studied for a period of one year, i.e. from October, 2000 to September, 2001. In this study, 36 Phytoplanktons belonging to six families were observed. The other aquatic fauna observed included 14 species of fish, 2 turtles, one leech, one prawn, one shrimp and one bullfrog. The results showed that physico-chemical parameters had an impact …

Prevalence Of Flying Squirrels Recorded From Selected Areas Of Ajk, Jibran Haider, Madeeha Manzoor, Inayatullah Malik

Journal of Bioresource Management

Squirrels belong to the Sciuridae family. This family comprises of small and medium-sized rodents. They are native in regions of US, Eurasia, and Africa. Different nature parks were selected for survey. Dhirkot Nature Reserve (DNR) was observed in February, 2008, Banjosa Nature Reserve (BNR) in May to June, 2009), Tolipir National Park (TNP) in April to May, 2008, Pir Chanasi National Park (PCNP) in April to May, 2010 and Pir Lasura National Park (PLNP) in June to July, 2009. Only two species from the family Sciuridae were found in the study area; Hylopetes fimbriatus (Small Kashmir flying squirrel) and …

Livestock At Marala Head, Zahid Bhatti, Fakhra Nazir, Jibran Haider

Journal of Bioresource Management

Pakistan possesses the most varied and widely distributed network of wetlands. The study area spanned across Kikar post to head Marala at river Jammu Tawi from Kalyal to head Marala at river Chenab and from Rangpur Kuri to head Marala at river Manawar Tawi. Total count of the livestock (resting grazing) population was taken during each calendar month of the year, i.e., from October, 2000 to September 2001. The results of the survey confirmed the presence of 6 common species of livestock i.e. sheep, goat, buffaloes, cows, donkeys and horses in the study area in different sizes of populations.

Relative Abundance And Diversity Of Rosaceae From Protected Parks In Northern Areas Of Pakistan, Kishwar Sultana, Madeeha Manzoor, Mohammad Sikandar Farooq

Journal of Bioresource Management

The Rosaceae family is also considered as the rose family. There are 27 genera and nearly 160 species from this family in Pakistan. This study was carried out to determine the diversity and population size of species belonging to the Rosaceae family in selected national parks from Azad Jammu and Kashmir, Pakistan. Unbiased stage-sampling was carried out. Four species belonging to the Rosaceae family were observed in Banjosa Game Reserve. Rosa brunonii and Duchesnea indica present, were not enough to calculate relative abundance. Only two species from this family were recorded from Dhirkot National Park, Rubus fruticosus and Fragaria nubicola …

Avian Diversity Of Langh Lake Sindh And Their Response To The Disturbance., Ali Hasnain Mosvi, Yasir Muneer, Javeed Ali Maher, Jibran Haider, Amir Naseer, Abdullah Ibrahim

Journal of Bioresource Management

Birds and human interaction add harmful effects on conservation and behavior of bird. To develop a buffer between human activities and number of birds, a comprehensive study is necessary to assess the response of birds and their flight initiation distance. An experimental design was employed to record the bird’s response and their flight initiation distance, for 109 birds of Langh lake, Sindh. Fifty percent of passerine birds showed medium response towards disturbance and 39% of water birds showed high response toward disturbance. 13 species of family Scolopacidae were recorded during study and 84.62% species of this family showed high response …

Comparative Mito-Genomic Analysis Of Different Species Of Genus Canis By Using Different Bioinformatics Tools, Ume Rumman, Ghulam Sarwar, Safia Janjua, Fida Muhammad Khan, Fakhra Nazir

Journal of Bioresource Management

In the current study, the mitochondrial genes sequence for COI, Cyt b and 16s rRNA of seven species found in different parts of the world were retrieved from NCBI Gene Bank while, PCR products of COI, Cyt b and 16s rRNA genes obtained from C. lupus and C.aureus present in Pakistan were sequenced and aligned for comparison. The phylogenetic analysis of mitochondrial COI, Cyt b and 16s rRNA genes showed almost the same results for the extant species of genus Canis. 16s rRNA revealed C. latrans, C. lycaon and C. simensis showed close phylogenetic relation with each other. …

Ethnobotanical Importance And Relative Abundance Of The Mulberry Family From Temperate Highlands, Pakistan, Kishwar Sultana, Sher Wali Khan, Safdar Ali Shah, Jibran Haider

Journal of Bioresource Management

Five protected areas from temperate highlands of Pakistan were gauged for biodiversity of the Moraceae family. The National Park in Pir Lasura was studied from June to July 2009, in Banjosa from May to June 2009, in Pir Chanasi from April to May 2010, in Dhirkot (February 2008) and in Tolipir from April to May 2008. From the five protected areas surveyed, only three had species belonging to the family Moraceae. Three species were observed from Banjosa Game Reserve, two from Tolipir Nature Reserve and six from Pir Lasura National Park. The species commonly found were Ficus carica, Ficus …

Diversity Of Moths In Some Selected Areas Of District Bagh, Azad Jammu & Kashmir (Pakistan), Abu Ul Hassan Faiz, Mehboob Ul Hassan, Mikhail F. Bagaturov, Ghazal Tariq, Lariab Zahra Faiz

Journal of Bioresource Management

The present study was designed to find the diversity and composition of moths existing at different tropical levels in food chain for sustainable ecological process of ecosystem in Bagh (Azad Jammu & Kashmir). The study was conducted from 10 December 2017 to 30 September 2018. A total of fifty-eight species belonging to thirteen families were collected from three sites (cultivated areas, wild areas and suburban) of study area by using light trap method. This study provides baseline data for checklist of moths in Bagh.

Question Answering For Suicide Risk Assessment Using Reddit, Amanuel Alambo, Usha Lokala, Ugur Kursuncu, Krishnaprasad Thirunarayan, Amelia Gyrard, Randon S. Welton, Jyotishman Pathak, Amit P. Sheth

Kno.e.sis Publications

Mental Health America designed ten questionnaires that are used to determine the risk of mental disorders. They are also commonly used by Mental Health Professionals (MHPs) to assess suicidality. Specifically, the Columbia Suicide Severity Rating Scale (C-SSRS), a widely used suicide assessment questionnaire, helps MHPs determine the severity of suicide risk and offer an appropriate treatment. A major challenge in suicide treatment is the social stigma wherein the patient feels reluctance in discussing his/her conditions with an MHP, which leads to inaccurate assessment and treatment of patients. On the other hand, the same patient is comfortable freely discussing his/her mental …

Genetic Study Of Checkpoint Defects Of The Mus81-1 Mutant In The Fission Yeast Schizosaccharomyces Pombe, Darlington Osei Abrefa

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In response to various perturbations of DNA replication, the DNA replication checkpoint is activated in eukaryotes to stimulate a cascade of cellular responses that are crucial for maintaining genome stability and cell survival. Defects in the checkpoint pathway result in mutations and genome instability, which is a hallmark for cancers. This study used a genetic approach to identify a mutation in the MMS (methyl methanesulfonate) and UV-sensitive protein Mus81, a DNA repair enzyme that resolves aberrant DNA structures through the homologous recombination pathway. We show that a single missense mutation, identified in fission yeast mus81-1, causes moderate reduction in the …

The Wright State – Lake Campus 2018 – 2019 Scholarly Review, Wright State University - Lake Campus

Lake Campus Research Symposium Reports

This report provides a listing of the scholarly endeavors from Lake Campus during the 2018 calendar year spanning across disciplines.

This document contains the Annual Research Report from 2018 and the Research Symposium Program from 2019.

Empathi: An Ontology For Emergency Managing And Planning About Hazard Crisis, Manas Gaur, Kaeedeh Shekarpour, Amelia Gyrard, Amit P. Sheth

Kno.e.sis Publications

In the domain of emergency management during hazard crises, having sufficient situational awareness information is critical. It requires capturing and integrating information from sources such as satellite images, local sensors and social media content generated by local people.
A bold obstacle to capturing, representing and integrating such heterogeneous and diverse information is lack of a proper ontology which properly conceptualizes this domain, aggregates and unifies datasets. Thus, in this paper, we introduce empathi ontology which conceptualizes the core concepts describing the domain of emergency managing and planning of hazard crises.
Although empathi has a coarse-grained view, it considers the necessary …

Adaptive Knowledge Networks: A Time Capsule, Swati Padhee, Anurag Illendula, Amit Sheth, Krishnaprasad Thirunarayan, Valerie L. Shalin

Kno.e.sis Publications

❖ Real world events are dynamic in nature Periodic events e.g. US Presidential Election Non-periodic events e.g. Cyclone Idai

❖ Need for real-time predictive analysis, trend analysis, spatio-temporal decision making, public opinion analysis for events.

❖ Current state-of-the-art curates dynamic knowledge graph from structured text.

❖ We propose creating an Adaptive Knowledge Network from incoming real-time multimodal spatio-temporally evolving data.

Automatic Identification Of Individual Drugs In Death Certificates, Soon Jye Kho, Amit Sheth, Olivier Bodenreider

Kno.e.sis Publications

Background:

Establishing trends of drug overdoses requires the identification of individual drugs in death certificates, not supported by coding with the International Classification of Diseases. However, identifying drug mentions from the literal portion of death certificates remains challenging due to the variability of drug names.

Objectives:

To automatically identify individual drugs in death certificates.

Methods:

We use RxNorm to collect variants for drug names (generic names, synonyms, brand names) and we algorithmically generate common misspellings. We use this automatically compiled list to identify drug mentions from 703,106 death certificates and compare the performance of our automated approach to that of …

Trpm7 Channels As A Bioassay Of Internal And External Mg2+, Charles T. Luu

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Magnesium is an important divalent metal cation that is involved in numerous cellular functions. The details of cellular Mg2+ regulation, homeostasis and transport remain unclear. Magnesium transporter protein (MagT1) is a Mg2+ transporter and deficiency of this protein has been reported to lead to impaired Mg2+ influx and a decreased cytoplasmic [Mg2+]. Transient receptor potential melastatin 7 (TRPM7) is a ubiquitously expressed membrane protein containing a channel pore and a C-terminal alpha-type serine/threonine protein kinase domain. Importantly, TRPM7 channel is believed to conduct both Mg2+ and Ca2+. In the present study, we investigated if TRPM7 can be used as a …

Six-Nine Months Long Term Culture Of Mouse Bone Marrow Cells Differentiated To Macrophages And Eosinophils, Olena B. Svitlova

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Mouse models of eosinophil-associated diseases have been used to study the mechanisms of disease pathogenesis. In this study, mouse-derived bone marrow cells were used in long-term (6 and 9 months) cell cultures of differentiated eosinophils and macrophages. IL-5 was used to differentiate the stem cells to eosinophils and GM-CSF was used to propagate macrophages from the bone marrow stem cells. The maximum time period for observing the eosinophil cultures was 252 days which is censurably longer than the 18 days culture period observed by others. The results were assessed by describing the microscopic cell morphology by Wright staining, modified Giemsa …

Effects Of Coral Reef Habitat Complexity On The Community Composition And Trophic Structure Of Marine Fish Assemblages In Indonesia’S Wakatobi Marine National Park, Kuyer Josiah Fazekas Jr.

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The coral reefs within Indonesia’s Wakatobi Marine National Park support a high diversity of reef-building hard corals and associated marine fish. Climate change threatens to dramatically affect coral reef ecosystems by altering the interactions between reef fish and the specific microhabitats they depend on for survival. To examine the spatially varied effects of habitat complexity on the community composition and trophic structure of marine fish assemblages, I analyzed fish community and habitat complexity data across reef zones. Habitat complexity metrics were: structural complexity, the percentage of hard coral (HC) cover, HC genera richness, HC genera diversity (Shannon index), and HC …

Bat Species Diversity And Habitat Use Assessment With Focus On Endangered Indiana Bats In The Wright State University Woods, Megan R. Rude

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The goals of my thesis are to: 1) identify species of bats in Wright State University’s (WSU) campus woods via acoustic surveys to compare to detections from previous years (Chapter 1) (2) analyze occupancy and detection probabilities of Indiana bats in different areas throughout the woods (Chapter 1), and 3) create an acoustical approach to analyze habitat use through bat social calls (Chapter 2). In Chapter 1, I conducted stationary acoustic surveys in the Wright State University woods in hydric (riparian), edge, and old growth habitats to record bat vocalizations. The WSU woods have a diverse bat community as ten …

Differing Functions Of Atr Kinase In Human Epidermal Keratinocytes Exposed To Ultraviolet B Radiation, Kavya Shaj

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Ataxia-telangiectasia and Rad-3 related (ATR) is a DNA damage response protein kinase that is upregulated in various cancer cell types and has key roles in cell cycle progression, DNA repair and apoptosis. Small molecule ATR kinase inhibitors are of importance as antineoplastic agents because they sensitize cancer cells to DNA damaging chemotherapy drugs. However, only a few studies have looked at the effects of ATR kinase inhibitors on non-replicating cells, which constitute the majority of cells in the human body and have suggested an opposite, pro-apoptotic role for ATR kinase signaling in non-replicating cells in comparison to a pro-survival function …