Life Sciences Commons^™

Demographic Modeling Of Conservation Strategies For The Yosemite Toad (Anaxyrus Canorus), Corrina Rebecca Kamoroff

Cal Poly Humboldt theses and projects

The Yosemite toad (Anaxyrus canorus) is an anuran species endemic to the Sierra Nevada in California that, like many amphibians globally, has suffered population declines. The documented decline in A. canorus populations across their historic range highlights the need for an effective management strategy to protect the species from future extirpation. For this study, I estimated survival rates of A. canorus using a Cormack-Jolly-Seber model populated with data from a demographic study. I then used a female-only post-birth pulse stochastic Lefkovitch matrix model using vital rates I estimated and from the literature to simulate the effect of different …

Evaluating Moose Alces Alces Population Response To Infestation Level Of Winter Ticks Dermacentor Albipictus, Daniel D. Ellingwood, Peter J. Pekins, Henry Jones, Anthony R. Musante

USDA Wildlife Services: Staff Publications

Many wildlife populations are experiencing a variety of environmental pressures due to the direct and indirect consequences of a changing climate. In the northeast, USA, moose Alces alces are declining in large part because of the increasing parasitism by winter tick Dermacentor albipictus, facilitated by high host density and optimal environmental conditions. To test this hypothesis, and better understand the influence of this interaction on the stability of the regional population, we constructed a population viability model using data collected through comprehensive survival and productivity studies in 2002–2005 and 2014–2018 in northern New Hampshire. Years of heavy tick infestation (epizootics) …

An Ecopath With Ecosim Analysis On Offshore Petroleum Platform Influences On Gulf Of Mexico Red Snapper, Valentin Gomez

LSU Master's Theses

Offshore oil and gas platforms have had a significant presence in the Gulf of Mexico since the 1950s. An important secondary function of these structures is that they provide artificial habitat to fisheries, most notably Red snapper. Policy changes intended to reduce the risk associated with aging infrastructure have reduced the number of standing platforms from 4044 to 1867 from 2001 to 2018. The effect this loss of habitat has on Red snapper was tested by creating three scenarios of platform changes and modeling the perturbation from 2005 to 2050. The simulation was accomplished using the ecological model Ecopath with …

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The goals of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and legally feasible option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed MAR harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services modeling; and …

Modeling Wind-Induced Waves In The Salish Sea, Zhaoqing Yang, Wei-Cheng Wu, Taiping Wang, Guillaume Mauger, Ruby Leung

Salish Sea Ecosystem Conference

There have been on-going efforts for increasing coastal resilience to the risk of coastal inundation as a result of sea-level rise in Washington. Accurate coastal risk projection depends on detailed and accurate information of sea level rise, including waves and storm surge induced by windstorms. This paper presents a modeling study simulating wind-induced waves in the Salish Sea. A nested-grid modeling approach was used to provide accurate and robust model simulations at various scales. The NOAA NCEP’s WaveWatch III (WW3) model is configured at global and regional scales with wind forcing obtained from the Climate Forecast System Reanalysis (CFSR). For …

Big Sharks In The Salish Sea: Combining Passive Acoustics With The Salish Sea Model To Predict Sixgill Shark (Hexanchus Griseus) Presence, Alli Cramer, Steve Katz, Kelly Andrews, Daniel H. Thornton

Salish Sea Ecosystem Conference

Examination of species-environment relationships that determine broad-scale distribution patterns is a key focus of ecological research. Characterizing animal-habitat associations in the marine environment is particularly challenging given the opacity of the ocean, and addressing this question in marine systems has consequently lagged behind terrestrial systems. In this project, we have leveraged existing data on locations of a large marine predator, the Sixgill Shark, Hexanchus griseus, and linked that with the PNNL’s Salish Sea Model over the domain of shark movement in Puget Sound, Washington state. Twenty-nine Sixgill sharks were tracked from 2005-2009 across 130 hydrophone receivers with tags that reported …

A Modeling Study Of Storm Surge In The Salish Sea, Zhaoqing Yang, Taiping Wang, Ian Miller

Salish Sea Ecosystem Conference

The Pacific Northwest coasts are subject to the threat of coastal inundation as a result of storm surge. This snapshot presentation provides an overview of a modeling study of storm surge in the Salish Sea using a high resolution coastal hydrodynamic model. A series of historical storm surge events were identified based on non-tidal residual (NTR) water levels observed at Seattle tide gage. Model simulations corresponding to selected storm surge events were conducted. The Salish Sea storm surge model was validated with both observed tidal and NTR data at NOAA tide gauges in the Salish Sea. Sensitivity analysis on the …

Population Size And Habitat Association Of Etheostoma Nebra, The Buck Darter, Using Abundance Modeling In The Buck Creek System, Cumberland River Drainage, Kentucky, Harold Davidson Black

Online Theses and Dissertations

Etheostoma nebra (Buck Darter) is a recently described fish species confined to the Buck Creek system, Cumberland River drainage, Kentucky. A 2010-2012 survey of Buck Creek by Kentucky Department of Fish and Wildlife Resources personnel observed E. nebra at 2 of 47 historical sites. Within the entire system, individuals were found only in Flat Lick Creek around the confluence of two spring-fed tributaries, Big Spring Branch and Stewart Branch. The objectives of this study were to: (1) determine population size, demographics, and habitat association of E. nebra in Big Spring Branch and Stewart Branch, (2) evaluate habitat conditions both within …

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The aims of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and legally feasible option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed MAR harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services modeling; and …

An Estimation Of Potential Salmonid Habitat Capacity In The Upper Mainstem Eel River, California, Emily J. Cooper

Cal Poly Humboldt theses and projects

In Northern California’s Eel River watershed, the two dams that make up the Potter Valley Project (PVP) restrict the distribution and production of anadromous salmonids, and current populations of Chinook Salmon (Oncorhynchus tshawytscha) and steelhead trout (O. mykiss) in the upper mainstem Eel River are in need of recovery. In anticipation of the upcoming FERC relicensing of the PVP, this project provides an estimation of the extent of potential salmonid habitat and its capacity for steelhead trout and Chinook Salmon in the upper mainstem Eel River watershed above the impassable Scott Dam. Using three fish passage …

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The aims of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and permittable option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed Managed Aquifer Recharge (MAR) harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services …

Understanding The Impact Of Commercial Harvest On White Suckers (Catostomus Commersonii) In Maine, Megan A. Begley

Electronic Theses and Dissertations

The State of Maine issues an unlimited number of commercial permits for the harvest of White Suckers Catostomus commersonii in Maine’s inland waters. The fishery provides a necessary source of fresh lobster Homarus americanus bait to coastal communities at a time when other bait sources are scarce. The impacts of the increasing number of permits and subsequent numbers of fishermen on the white sucker population is unknown. The Maine Department on Inland Fisheries and Wildlife (MDIFW) has closed a number of waters due to concerns that overfishing and incidental catch of other fish species may occur.

In Chapter 1, we …

Interdisciplinary Modeling For Water-Related Issues Graduate Course, Laurel Saito, Alexander Fernald, Timothy Link

All ECSTATIC Materials

The science and management of aquatic ecosystems is inherently interdisciplinary, with issues associated with hydrology, atmospheric science, water quality, geochemistry, sociology, economics, environmental science, and ecology. Addressing water resources issues in any one discipline invariably involves effects that concern other disciplines, and attempts to address one issue often have consequences that exacerbate existing issues or concerns, or create new ones (Jørgensen et al. 1992; Lackey et al. 1975; Straskraba 1994) due to the strongly interactive nature of key processes (Christensen et al. 1996). Thus, research and management of aquatic ecosystems must be interdisciplinary to be most effective, but such truly …

Toward “Optimal” Integration Of Terrestrial Biosphere Models, Christopher R. Schwalm, Deborah N. Huntzinger, Joshua B. Fisher, Anna M. Michalak, Kevin Bowman, Philippe Ciais, Robert Cook, Bassil El-Masri, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul Jain, Anthony W. King, Hiumin Lei, Junjie Liu, Chaoqun (Crystal) Lu, Jaifu Mao, Shushi Peng, Benjamin Poulter, Daniel Ricciuto, Kevin Schaefer, Xiaoying Shi, Bo Tao, Hanqin Tian, Weile Wang, Yaxing Wei, Jia Yang, Ning Zeng

Chaoqun (Crystal) Lu

Multimodel ensembles (MME) are commonplace in Earth system modeling. Here we perform MME integration using a 10-member ensemble of terrestrial biosphere models (TBMs) from the Multiscale synthesis and Terrestrial Model Intercomparison Project (MsTMIP). We contrast optimal (skill based for present-day carbon cycling) versus naïve (“one model-one vote”) integration. MsTMIP optimal and naïve mean land sink strength estimates (−1.16 versus −1.15 Pg C per annum respectively) are statistically indistinguishable. This holds also for grid cell values and extends to gross uptake, biomass, and net ecosystem productivity. TBM skill is similarly indistinguishable. The added complexity of skill-based integration does not materially change …

Using Capture-Mark-Recapture Techniques To Estimate Detection Probabilities & Fidelity Of Expression For The Critically Endangered James Spinymussel (Pleurobema Collina)., Alaina C. Esposito

Masters Theses, 2010-2019

The critically endangered James Spinymussel (Pleurobema collina) is a species of freshwater mussel endemic to Virginia’s James and Dan River basins. In the last 20 years, P. collina has experienced a substantial decline in numbers and currently occupies approximately 10% of its original habitat; however, little information is known about this species to assist in conservation. A 230-meter reach of transitional habitat in Swift Run was selected for repeat observations to estimate detection probabilities using a Capture-Mark-Recapture framework. In June 2014, visual scouting began to locate and tag P. collina (including other mussels in the community) with PIT …

On The Challenges Of Modeling The Net Radiative Forcing Of Wetlands: Reconsidering Mitsch Et Al. 2013, Scott C. Neubauer

Biology Publications

Wetlands play a role in regulating global climate by removing carbon dioxide (CO2) from the atmosphere and sequestering it as soil carbon, and by emitting methane (CH4) and nitrous oxide (N2O) to the atmosphere. In a recent article in this journal (Mitsch et al. Landscape Ecol 28:583–597, 2013), CO2 sequestration and CH4 emissions were modeled for several freshwater wetlands that vary in vegetation type, climate, and hydrology. The authors of that study made significant errors that caused them to underestimate the importance of wetland CH4 emissions on climate dynamics. Here, I reanalyze the Mitsch et al. dataset and show that …

Modelling C3 Photosynthesis From The Choroplast To The Ecosystem, Andy Vanloocke, Carl J. Bernacchi, Justin E. Bagley, Shawn P. Serbin, Ursula M. Ruiz-Vera, David M. Rosenthal

Andy VanLoocke

The Impacts Of Miscanthus×Giganteus Production On The Midwest Us Hydrologic Cycle, Andy Vanloocke, Carl J. Bernacchi, Tracy E. Twine

Andy VanLoocke

Surface Mining And Reclamation Effects On Flood Response Of Watersheds In The Central Appalachian Plateau Region, Todd R. Lookingbill, Joseph R. Ferrari, B. Mccormick, P. A. Townsend, K. N. Eshleman

Geography and the Environment Faculty Publications

Surface mining of coal and subsequent reclamation represent the dominant land use change in the central Appalachian Plateau (CAP) region of the United States. Hydrologic impacts of surface mining have been studied at the plot scale, but effects at broader scales have not been explored adequately. Broad-scale classification of reclaimed sites is difficult because standing vegetation makes them nearly indistinguishable from alternate land uses. We used a land cover data set that accurately maps surface mines for a 187-km2 watershed within the CAP. These land cover data, as well as plot-level data from within the watershed, are used with HSPF …