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Full-Text Articles in Life Sciences

Seasonal Niche Differentiation Among Closely Related Marine Bacteria, Adrià Auladell, Albert Barberán, Ramiro Logares, Esther Garcés, Josep M. Gasol, Isabel Ferrera Jan 2022

Seasonal Niche Differentiation Among Closely Related Marine Bacteria, Adrià Auladell, Albert Barberán, Ramiro Logares, Esther Garcés, Josep M. Gasol, Isabel Ferrera

Research outputs 2014 to 2021

Bacteria display dynamic abundance fluctuations over time in marine environments, where they play key biogeochemical roles. Here, we characterized the seasonal dynamics of marine bacteria in a coastal oligotrophic time series station, tested how similar the temporal niche of closely related taxa is, and what are the environmental parameters modulating their seasonal abundance patterns. We further explored how conserved the niche is at higher taxonomic levels. The community presented recurrent patterns of seasonality for 297 out of 6825 amplicon sequence variants (ASVs), which constituted almost half of the total relative abundance (47%). For certain genera, niche similarity decreased as nucleotide …


A Phylogeny Of Antirrhinum Reveals Parallel Evolution Of Alpine Morphology, Mario Durán-Castillo, Andrew Hudson, Yvette Wilson, David L. Field, Alex D. Twyford Jan 2022

A Phylogeny Of Antirrhinum Reveals Parallel Evolution Of Alpine Morphology, Mario Durán-Castillo, Andrew Hudson, Yvette Wilson, David L. Field, Alex D. Twyford

Research outputs 2014 to 2021

Parallel evolution of similar morphologies in closely related lineages provides insight into the repeatability and predictability of evolution. In the genus Antirrhinum (snapdragons), as in other plants, a suite of morphological characters are associated with adaptation to alpine environments.

We tested for parallel trait evolution in Antirrhinum by investigating phylogenetic relationships using restriction-site associated DNA (RAD) sequencing. We then associated phenotypic information to our phylogeny to reconstruct the patterns of morphological evolution and related this to evidence for hybridisation between emergent lineages.

Phylogenetic analyses showed that the alpine character syndrome is present in multiple groups, suggesting that Antirrhinum has repeatedly …


Uncoupled Seasonal Variability Of Transparent Exopolymer And Coomassie Stainable Particles In Coastal Mediterranean Waters: Insights Into Sources And Driving Mechanisms, Marina Zamanillo, Eva Ortega-Retuerta, Carolina Cisternas-Novoa, Cèlia Marrasé, Carles Pelejero, Josep Pascual, Josep M. Gasol, Anja Engel, Rafel Simó Dec 2021

Uncoupled Seasonal Variability Of Transparent Exopolymer And Coomassie Stainable Particles In Coastal Mediterranean Waters: Insights Into Sources And Driving Mechanisms, Marina Zamanillo, Eva Ortega-Retuerta, Carolina Cisternas-Novoa, Cèlia Marrasé, Carles Pelejero, Josep Pascual, Josep M. Gasol, Anja Engel, Rafel Simó

Research outputs 2014 to 2021

Transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP) are gel-like particles, ubiquitous in the ocean, that affect important biogeochemical processes including organic carbon cycling by planktonic food webs. Despite much research on both groups of particles (especially TEP) over many years, whether they exist as distinctly stainable fractions of the same particles or as independent particles, each with different driving factors, remains unclear. To address this question, we examined the temporal dynamics of TEP and CSP over 2 complete seasonal cycles at 2 coastal sites in the Northwestern Mediterranean Sea, the Blanes Bay Microbial Observatory (BBMO) and the L’Estartit …


The Use Of Singlebeam Echo-Sounder Depth Data To Produce Demersal Fish Distribution Models That Are Comparable To Models Produced Using Multibeam Echo-Sounder Depth, Marcela Montserrat Landero Figueroa, Miles J. G. Parsons, Benjamin J. Saunders, Ben Radford, Chandra Salgado-Kent, Iain M. Parnum Dec 2021

The Use Of Singlebeam Echo-Sounder Depth Data To Produce Demersal Fish Distribution Models That Are Comparable To Models Produced Using Multibeam Echo-Sounder Depth, Marcela Montserrat Landero Figueroa, Miles J. G. Parsons, Benjamin J. Saunders, Ben Radford, Chandra Salgado-Kent, Iain M. Parnum

Research outputs 2014 to 2021

Seafloor characteristics can help in the prediction of fish distribution, which is required for fisheries and conservation management. Despite this, only 5%–10% of the world's seafloor has been mapped at high resolution, as it is a time-consuming and expensive process. Multibeam echo-sounders (MBES) can produce high-resolution bathymetry and a broad swath coverage of the seafloor, but require greater financial and technical resources for operation and data analysis than singlebeam echo-sounders (SBES). In contrast, SBES provide comparatively limited spatial coverage, as only a single measurement is made from directly under the vessel. Thus, producing a continuous map requires interpolation to fill …


Thirty Critical Research Needs For Managing An Ecologically And Culturally Unique Remote Marine Environment: The Kimberley Region Of Western Australia, C. Cvitanovic, M. Mackay, R. Kelly, S. K. Wilson, K. Waples, K. L. Nash, E. I. Van Putten, S. Field, T. Botterill-James, B. J. Austin, L. E. Beckley, F. Boschetti, M. Depczynski, R. J. Dobbs, R. D. Evans, M. Feng, R. K. Goater, A. R. Halford, A. Kendrick, G. A. Kendrick, G. D. B. Lincoln, L. J. Ludgerus, R. J. Lowe, Kathryn Mcmahon, J. K. Munro, S. J. Newman, C. Nutt, L. Pearson, M. J. O'Leary, Z. T. Richards, W. D. Robbins, D. I. Rogers, Chandra P. Salgado Kent, V. Schoepf, M. J. Travers, M. Thums, A. D. Tucker, J. N. Underwood, S. Whiting, D. Matthews, Dambimangari Aboriginal Corporation Oct 2021

Thirty Critical Research Needs For Managing An Ecologically And Culturally Unique Remote Marine Environment: The Kimberley Region Of Western Australia, C. Cvitanovic, M. Mackay, R. Kelly, S. K. Wilson, K. Waples, K. L. Nash, E. I. Van Putten, S. Field, T. Botterill-James, B. J. Austin, L. E. Beckley, F. Boschetti, M. Depczynski, R. J. Dobbs, R. D. Evans, M. Feng, R. K. Goater, A. R. Halford, A. Kendrick, G. A. Kendrick, G. D. B. Lincoln, L. J. Ludgerus, R. J. Lowe, Kathryn Mcmahon, J. K. Munro, S. J. Newman, C. Nutt, L. Pearson, M. J. O'Leary, Z. T. Richards, W. D. Robbins, D. I. Rogers, Chandra P. Salgado Kent, V. Schoepf, M. J. Travers, M. Thums, A. D. Tucker, J. N. Underwood, S. Whiting, D. Matthews, Dambimangari Aboriginal Corporation

Research outputs 2014 to 2021

The Kimberley marine environment in Western Australia is widely recognised for its outstanding natural features, vast and remote sea and landscapes, and Indigenous cultural significance. To ensure that adequate baseline information is available to understand, monitor and manage this remote and relatively understudied region, scientific exploration was undertaken between 2012 and 2018 as part of the Kimberley Marine Research Program (KMRP). Whilst this program generated significant amounts of new knowledge about the region, important research gaps remain, that if answered, should improve the capacity of managers to conserve the region's values more effectively. Here, we apply established participatory horizon scanning …


Predictors Of Marine Genetic Structure In The Indo-Australian Archipelago, Udhi E. Hernawan, Paul S. Lavery, Gary A. Kendrick, Kor-Jent Van Dijk, Yaya I. Ulumuddin, Teddy Triandiza, Kathryn M. Mcmahon Sep 2021

Predictors Of Marine Genetic Structure In The Indo-Australian Archipelago, Udhi E. Hernawan, Paul S. Lavery, Gary A. Kendrick, Kor-Jent Van Dijk, Yaya I. Ulumuddin, Teddy Triandiza, Kathryn M. Mcmahon

Research outputs 2014 to 2021

The spatial genetic structure of marine organisms is related to dispersal and life-history traits, historical processes, current oceanographic connectivity and habitat features. Here, we assessed the relative importance of these factors for the genetic structure of a broad range of marine species in the Indo Australian Archipelago (IAA). We collated published data on 99 marine species from eight taxonomic groups (ascidians, fishes, molluscs, crustaceans, echinoderms, corals, reptiles, and marine plants) and used generalized linear models (GLMs) to estimate the best predictors of genetic structure. Genetic structure was characterized by FST and the number of genetic clusters over the study area. …


A Threatened Ecological Community: Research Advances And Priorities For Banksia Woodlands, Alison L. Ritchie, Lauren N. Svejcar, Bronwyn M. Ayre, Julian Bolleter, Aaron Brace, Michael D. Craig, Belinda Davis, Robert A. Davis, Eddie J. B. Van Etten, Joseph B. Fontaine, William M. Fowler, Ray H. Froend, Christine Groom, Giles E. S. J. Hardy, Paula Hooper, Anna J. M. Hopkins, Michael Hughes, Siegfried L. Krauss, Matthias Leopold, Ben P. Miller, Russell G. Miller, Cristina E. Ramalho, Katinka X. Ruthrof, Christopher Shaw, Jason C. Stevens, Ryan Tangney, Leonie E. Valentine Jan 2021

A Threatened Ecological Community: Research Advances And Priorities For Banksia Woodlands, Alison L. Ritchie, Lauren N. Svejcar, Bronwyn M. Ayre, Julian Bolleter, Aaron Brace, Michael D. Craig, Belinda Davis, Robert A. Davis, Eddie J. B. Van Etten, Joseph B. Fontaine, William M. Fowler, Ray H. Froend, Christine Groom, Giles E. S. J. Hardy, Paula Hooper, Anna J. M. Hopkins, Michael Hughes, Siegfried L. Krauss, Matthias Leopold, Ben P. Miller, Russell G. Miller, Cristina E. Ramalho, Katinka X. Ruthrof, Christopher Shaw, Jason C. Stevens, Ryan Tangney, Leonie E. Valentine

Research outputs 2014 to 2021

The rapid expansion of urban areas worldwide is leading to native habitat loss and ecosystem fragmentation and degradation. Although the study of urbanisation's impact on biodiversity is gaining increasing interest globally, there is still a disconnect between research recommendations and urbanisation strategies. Expansion of the Perth metropolitan area on the Swan Coastal Plain in south-western Australia, one of the world's thirty-six biodiversity hotspots, continues to affect the Banksia Woodlands (BWs) ecosystem, a federally listed Threatened Ecological Community (TEC). Here, we utilise the framework of a 1989 review of the state of knowledge of BWs ecology and conservation to examine scientific …


Seagrass Blue Carbon Stocks And Sequestration Rates In The Colombian Caribbean, Oscar Serrano, Diana I. Gómez-López, Laura Sánchez-Valencia, Andres Acosta-Chaparro, Raul Navas-Camacho, Juan González-Corredor, Cristian Salinas, Pere Masque, Cesar A. Bernal, Núria Marbà Jan 2021

Seagrass Blue Carbon Stocks And Sequestration Rates In The Colombian Caribbean, Oscar Serrano, Diana I. Gómez-López, Laura Sánchez-Valencia, Andres Acosta-Chaparro, Raul Navas-Camacho, Juan González-Corredor, Cristian Salinas, Pere Masque, Cesar A. Bernal, Núria Marbà

Research outputs 2014 to 2021

Seagrass ecosystems rank amongst the most efficient natural carbon sinks on earth, sequestering CO2 through photosynthesis and storing organic carbon (Corg) underneath their soils for millennia and thereby, mitigating climate change. However, estimates of Corg stocks and accumulation rates in seagrass meadows (blue carbon) are restricted to few regions, and further information on spatial variability is required to derive robust global estimates. Here we studied soil Corg stocks and accumulation rates in seagrass meadows across the Colombian Caribbean. We estimated that Thalassia testudinum meadows store 241 ± 118 Mg Corg ha−1 (mean ± SD) in the top 1 m-thick soils, …


Deep Ocean Metagenomes Provide Insight Into The Metabolic Architecture Of Bathypelagic Microbial Communities, Silvia G. Acinas, Pablo Sánchez, Guillem Salazar, Francisco M. Cornejo-Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima-Mendez, Simon Roux, José M. González, Jesús M. Arrieta, Intikhab S. Alam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustí, Takashi Gojobori, Dolors Vaqué, Matthew B. Sullivan, Carlos Pedrós-Alió, Ramon Massana, Carlos M. Duarte, Josep M. Gasol Jan 2021

Deep Ocean Metagenomes Provide Insight Into The Metabolic Architecture Of Bathypelagic Microbial Communities, Silvia G. Acinas, Pablo Sánchez, Guillem Salazar, Francisco M. Cornejo-Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima-Mendez, Simon Roux, José M. González, Jesús M. Arrieta, Intikhab S. Alam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustí, Takashi Gojobori, Dolors Vaqué, Matthew B. Sullivan, Carlos Pedrós-Alió, Ramon Massana, Carlos M. Duarte, Josep M. Gasol

Research outputs 2014 to 2021

The deep sea, the largest ocean’s compartment, drives planetary-scale biogeochemical cycling. Yet, the functional exploration of its microbial communities lags far behind other environments. Here we analyze 58 metagenomes from tropical and subtropical deep oceans to generate the Malaspina Gene Database. Free-living or particle-attached lifestyles drive functional differences in bathypelagic prokaryotic communities, regardless of their biogeography. Ammonia and CO oxidation pathways are enriched in the free-living microbial communities and dissimilatory nitrate reduction to ammonium and H2 oxidation pathways in the particle-attached, while the Calvin Benson-Bassham cycle is the most prevalent inorganic carbon fixation pathway in both size fractions. Reconstruction of …


Quantifying 210po/210pb Disequilibrium In Seawater: A Comparison Of Two Precipitation Methods With Differing Results, Montserrat Roca-Martí, Viena Puigcorbé, Maxi Castrillejo, Núria Casacuberta, Jordi Garcia-Orellana, J. Kirk Cochran, Pere Masqué Jan 2021

Quantifying 210po/210pb Disequilibrium In Seawater: A Comparison Of Two Precipitation Methods With Differing Results, Montserrat Roca-Martí, Viena Puigcorbé, Maxi Castrillejo, Núria Casacuberta, Jordi Garcia-Orellana, J. Kirk Cochran, Pere Masqué

Research outputs 2014 to 2021

The disequilibrium between lead-210 (210Pb) and polonium-210 (210Po) is increasingly used in oceanography to quantify particulate organic carbon (POC) export from the upper ocean. This proxy is based on the deficits of 210Po typically observed in the upper water column due to the preferential removal of 210Po relative to 210Pb by sinking particles. Yet, a number of studies have reported unexpected large 210Po deficits in the deep ocean indicating scavenging of 210Po despite its radioactive mean life of ∼ 200 days. Two precipitation methods, Fe(OH)3 and Co-APDC, are typically used to concentrate Pb and Po from seawater samples, and deep …


Environmental Gradients And Physical Barriers Drive The Basin-Wide Spatial Structuring Of Mediterranean Sea And Adjacent Eastern Atlantic Ocean Prokaryotic Communities, Marta Sebastián, Eva Ortega-Retuerta, Laura Gómez-Consarnau, Marina Zamanillo, Marta Álvarez, Javier Arístegui, Josep M. Gasol Jan 2021

Environmental Gradients And Physical Barriers Drive The Basin-Wide Spatial Structuring Of Mediterranean Sea And Adjacent Eastern Atlantic Ocean Prokaryotic Communities, Marta Sebastián, Eva Ortega-Retuerta, Laura Gómez-Consarnau, Marina Zamanillo, Marta Álvarez, Javier Arístegui, Josep M. Gasol

Research outputs 2014 to 2021

The Mediterranean Sea is a miniature ocean divided by the Sicily Strait into two basins with a marked west to east trophic gradient and separated of the nearby eastern Atlantic Ocean by the Strait of Gibraltar. Here, we test the hypothesis that these physical and environmental barriers favor the development of specific prokaryotic assemblages, leading to changes in community structure both in the vertical and horizontal spatial scales. By analyzing taxonomic and phylogenetic diversity using amplicon sequence variants (ASVs) of the 16S rRNA gene, we show that there is indeed marked vertical segregation of prokaryotic groups, similar to that found …


The Role Of Aerodynamic Resistance In Thermal Remote Sensing-Based Evapotranspiration Models, Ivonne Trebs, Kaniska Mallick, Nishan Bhattarai, Mauro Sulis, Jamie Cleverly, William Woodgate, Richard Silberstein, Nina Hinko-Najera, Jason Beringer, Wayne S. Meyer, Zhongbo Su, Gilles Boulet Jan 2021

The Role Of Aerodynamic Resistance In Thermal Remote Sensing-Based Evapotranspiration Models, Ivonne Trebs, Kaniska Mallick, Nishan Bhattarai, Mauro Sulis, Jamie Cleverly, William Woodgate, Richard Silberstein, Nina Hinko-Najera, Jason Beringer, Wayne S. Meyer, Zhongbo Su, Gilles Boulet

Research outputs 2014 to 2021

Aerodynamic resistance (hereafter ra) is a preeminent variable in evapotranspiration (ET) modelling. The accurate quantification of ra plays a pivotal role in determining the performance and consistency of thermal remote sensing-based surface energy balance (SEB) models for estimating ET at local to regional scales. Atmospheric stability links ra with land surface temperature (LST) and the representation of their interactions in the SEB models determines the accuracy of ET estimates. The present study investigates the influence of ra and its relation to LST uncertainties on the performance of three structurally different SEB models. It used data from nine Australian OzFlux eddy …


The Renaissance Of Odum's Outwelling Hypothesis In 'Blue Carbon' Science, Isaac R. Santos, David J. Burdige, Tim C. Jennerjahn, Steven Bouillon, Alex Cabral, Oscar Serrano, Thomas Wernberg, Karen Filbee-Dexter, Julia A. Guimond, Joseph J. Tamborski Jan 2021

The Renaissance Of Odum's Outwelling Hypothesis In 'Blue Carbon' Science, Isaac R. Santos, David J. Burdige, Tim C. Jennerjahn, Steven Bouillon, Alex Cabral, Oscar Serrano, Thomas Wernberg, Karen Filbee-Dexter, Julia A. Guimond, Joseph J. Tamborski

Research outputs 2014 to 2021

The term ‘Blue Carbon’ was coined about a decade ago to highlight the important carbon sequestration capacity of coastal vegetated ecosystems. The term has paved the way for the development of programs and policies that preserve and restore these threatened coastal ecosystems for climate change mitigation. Blue carbon research has focused on quantifying carbon stocks and burial rates in sediments or accumulating as biomass. This focus on habitat-bound carbon led us to losing sight of the mobile blue carbon fraction. Oceans, the largest active reservoir of carbon, have become somewhat of a blind spot. Multiple recent investigations have revealed high …


Population-Specific Resilience Of Halophila Ovalis Seagrass Habitat To Unseasonal Rainfall, An Extreme Climate Event In Estuaries, Chanelle L. Webster, Kieryn L. Kilminster, Marta Sánchez Alarcón, Katherine Bennett, Simone Strydom, Sian Mcnamara, Paul S. Lavery, Kathryn M. Mcmahon Jan 2021

Population-Specific Resilience Of Halophila Ovalis Seagrass Habitat To Unseasonal Rainfall, An Extreme Climate Event In Estuaries, Chanelle L. Webster, Kieryn L. Kilminster, Marta Sánchez Alarcón, Katherine Bennett, Simone Strydom, Sian Mcnamara, Paul S. Lavery, Kathryn M. Mcmahon

Research outputs 2014 to 2021

  1. Extreme climate events are predicted to alter estuarine salinity gradients exposing habitat-forming species to more frequent salinity variations. The intensity and duration of these variations, rather than the mean salinity values ecosystems are exposed to, may be more important in influencing resilience but requires further investigation.
  2. Precipitation, including the frequency, intensity and timing of occurrence, is shifting due to climate change. A global analysis on the timing of rainfall in estuarine catchments was conducted. In 80% of the case studies, the maximum daily rainfall occurred in the dry season at least once over the 40-year period and could be classified …


Evidence Of Large Increases In Sedimentation Rates Due To Fish Trawling In Submarine Canyons Of The Gulf Of Palermo (Sw Mediterranean), Sarah Paradis, Claudio Lo Iacono, Pere Masqué, Pere Puig, Albert Palanques, Tommaso Russo, The Island Cruise Tem Jan 2021

Evidence Of Large Increases In Sedimentation Rates Due To Fish Trawling In Submarine Canyons Of The Gulf Of Palermo (Sw Mediterranean), Sarah Paradis, Claudio Lo Iacono, Pere Masqué, Pere Puig, Albert Palanques, Tommaso Russo, The Island Cruise Tem

Research outputs 2014 to 2021

Bottom trawling in submarine canyons can affect their natural sedimentation rates, but studies addressing this issue are still scarce. In the Gulf of Palermo (SW Mediterranean), bottom trawling occurs on the slope around Oreto, Arenella and Eleuterio canyons. Analyses of excess 210Pb concentrations and grain size fractions in sediment cores from their canyon axes revealed that sedimentation rates and silt contents increased in all canyons in the 1980s, due to the expansion of more powerful trawlers ( > 500 HP) to deeper fishing grounds. In Eleuterio and Arenella canyons, sedimentation rates increased by an order of magnitude (0.1-1.4 cm·yr-1), whereas they …


Heterogeneous Tidal Marsh Soil Organic Carbon Accumulation Among And Within Temperate Estuaries In Australia, Connor Gorham, Paul S. Lavery, Jeffrey J. Kelleway, Pere Masque, Oscar Serrano Jan 2021

Heterogeneous Tidal Marsh Soil Organic Carbon Accumulation Among And Within Temperate Estuaries In Australia, Connor Gorham, Paul S. Lavery, Jeffrey J. Kelleway, Pere Masque, Oscar Serrano

Research outputs 2014 to 2021

The scarcity of data on tidal marsh soil accumulation rates (SAR) and soil organic carbon accumulation rates (CAR) globally precludes a comprehensive assessment of the role of tidal marshes in climate change mitigation and adaptation. Particularly few data exist from the southern hemisphere and for Australia in particular, which contains ~24% of globally recognised tidal marsh extent. Here we estimate SAR and CAR over the last 70 years using 210Pb-based geochronologies in temperate estuarine tidal marsh ecosystems in southern Western Australia (WA). Specifically, we assessed tidal marsh ecosystems situated in two geomorphic settings (marine vs. fluvial deltas) within 10 wave-dominated, …


Aquatic Ecosystems Of The Anthropocene: Limnology And Microbial Ecology Of Mine Pit Lakes, Melanie L. Blanchette, Mark A. Lund Jan 2021

Aquatic Ecosystems Of The Anthropocene: Limnology And Microbial Ecology Of Mine Pit Lakes, Melanie L. Blanchette, Mark A. Lund

Research outputs 2014 to 2021

Mine pit lakes (‘pit lakes’) are new aquatic ecosystems of the Anthropocene. Potentially hundreds of meters deep, these lakes are prominent in the landscape and in the public consciousness. However, the ecology of pit lakes is underrepresented in the literature. The broad goal of this research was to determine the environmental drivers of pelagic microbe assemblages in Australian coal pit lakes. The overall experimental design was four lakes sampled three times, top and bottom, in 2019. Instrument chains were installed in lakes and measurements of in situ water quality and water samples for metals, metalloids, nutrients and microbe assemblage were …


Review Of The Analysis Of 234th In Small Volume (2–4 L) Seawater Samples: Improvements And Recommendations, Samantha J. Clevenger, Claudia R. Benitez-Nelson, Jessica Drysdale, Steven Pike, Viena Puigcorbé, Ken O. Buesseler Jan 2021

Review Of The Analysis Of 234th In Small Volume (2–4 L) Seawater Samples: Improvements And Recommendations, Samantha J. Clevenger, Claudia R. Benitez-Nelson, Jessica Drysdale, Steven Pike, Viena Puigcorbé, Ken O. Buesseler

Research outputs 2014 to 2021

The short-lived radionuclide 234Th is widely used to study particle scavenging and transport from the upper ocean to deeper waters. This manuscript optimizes, reviews and validates the collection, processing and analyses of total 234Th in seawater and suggests areas of further improvements. The standard 234Th protocol method consists of scavenging 234Th from seawater via a MnO2 precipitate, beta counting, and using chemical recoveries determined by adding 230Th. The revised protocol decreases sample volumes to 2 L, shortens wait times between steps, and simplifies the chemical recovery process, expanding the ability to more rapidly and safely apply the 234Th method.


Genetic And Ecological Consequences Of Recent Habitat Fragmentation In A Narrow Endemic Plant Species Within An Urban Context, Nicola Delnevo, Andrea Piotti, Michele Carbognani, Eddie J. Van Etten, William D. Stock, David L. Field, Margaret Byrne Jan 2021

Genetic And Ecological Consequences Of Recent Habitat Fragmentation In A Narrow Endemic Plant Species Within An Urban Context, Nicola Delnevo, Andrea Piotti, Michele Carbognani, Eddie J. Van Etten, William D. Stock, David L. Field, Margaret Byrne

Research outputs 2014 to 2021

Understanding the timescales that shape spatial genetic structure is pivotal to ascertain the impact of habitat fragmentation on the genetic diversity and reproductive viability of long-lived plant populations. Combining genetic and ecological information with current and past fragmentation conditions allows the identification of the main drivers important in shaping population structure and declines in reproduction, which is crucial for informing conservation strategies. Using historic aerial photographs, we defined the past fragmentation conditions for the shrub Conospermum undulatum, a species now completely embedded in an urban area. We explored the impact of current and past conditions on its genetic layout …


Habitat Selection By Vulnerable Golden Bandicoots In The Arid Zone, Cheryl A. Lohr, Kristen Nilsson, Colleen Sims, Judy Dunlop, Michael T. Lohr Jan 2021

Habitat Selection By Vulnerable Golden Bandicoots In The Arid Zone, Cheryl A. Lohr, Kristen Nilsson, Colleen Sims, Judy Dunlop, Michael T. Lohr

Research outputs 2014 to 2021

In 2010, vulnerable golden bandicoots (Isoodon auratus) were translocated from Barrow Island, Western Australia, to a mainland predator-free enclosure on the Matuwa Indigenous Protected Area. Golden bandicoots were once widespread throughout a variety of arid and semiarid habitats of central and northern Australia. Like many small-to-medium-sized marsupials, the species has severely declined since colonization and has been reduced to only four remnant natural populations. Between 2010 and 2020, the reintroduced population of golden bandicoots on Matuwa was monitored via capture–mark–recapture data collection, which was used in spatially explicit capture–recapture analysis to monitor their abundance over time. In 2014, we used …


Natural Habitat Of Bali Starling (Leucopsar Rothschildi) In Bali Barat National Park, Indonesia, Sutomo Sutomo, Eddie Van Etten Jan 2021

Natural Habitat Of Bali Starling (Leucopsar Rothschildi) In Bali Barat National Park, Indonesia, Sutomo Sutomo, Eddie Van Etten

Research outputs 2014 to 2021

The Indonesian tropical savannas and dry forests provide habitats to various endemic wildlife. Unfortunately, a few of these endemic species are now seriously threatened and are red listed in the conservation status of International Union for Conservation of Nature (IUCN). Among these species, the Bali starling or Bali mynah Leucopsar rotschildi, locally known as Jalak Bali, is now mostly restricted to the Bali Barat National Park. Given the high extinction risk faced by such species, conservation programs require multidisciplinary approaches that would address both the biological attributes of the species itself and their habitat requirements. Regrettably, for many species, their …


What Lies Beneath: Predicting Seagrass Below-Ground Biomass From Above-Ground Biomass, Environmental Conditions And Seagrass Community Composition, C. J. Collier, L. M. Langlois, Kathryn M. Mcmahon, J. Udy, M. Rasheed, E. Lawrence, A. B. Carter, M. W. Fraser, L. J. Mckenzie Jan 2021

What Lies Beneath: Predicting Seagrass Below-Ground Biomass From Above-Ground Biomass, Environmental Conditions And Seagrass Community Composition, C. J. Collier, L. M. Langlois, Kathryn M. Mcmahon, J. Udy, M. Rasheed, E. Lawrence, A. B. Carter, M. W. Fraser, L. J. Mckenzie

Research outputs 2014 to 2021

© 2020 Seagrass condition, resilience and ecosystem services are affected by the below-ground tissues (BGr) but these are rarely monitored. In this study we compiled historical data across northern Australia to investigate biomass allocation strategies in 13 tropical seagrass species. There was sufficient data to undertake statistical analysis for five species: Cymodocea serrulata, Halophila ovalis, Halodule uninervis, Thalassia hemprichii, and Zostera muelleri. The response of below-ground biomass (BGr) to above-ground biomass (AGr) and other environmental and seagrass community composition predictor variables were assessed using Generalized Linear Models. Environmental data included: region, season, sediment type, water depth, proximity to land-based sources …


A Temporal Record Of Microplastic Pollution In Mediterranean Seagrass Soils, Martin Dahl, Sanne Bergman, Mats Björk, Elena Diaz-Almela, Maria Granberg, Martin Gullström, Carmen Leiva-Dueñas, Kerstin Magnusson, Candela Marco-Méndez, Nerea Piñeiro-Juncal, Miguel Ángel Mateo Jan 2021

A Temporal Record Of Microplastic Pollution In Mediterranean Seagrass Soils, Martin Dahl, Sanne Bergman, Mats Björk, Elena Diaz-Almela, Maria Granberg, Martin Gullström, Carmen Leiva-Dueñas, Kerstin Magnusson, Candela Marco-Méndez, Nerea Piñeiro-Juncal, Miguel Ángel Mateo

Research outputs 2014 to 2021

© 2021 Elsevier Ltd Plastic pollution is emerging as a potential threat to the marine environment. In the current study, we selected seagrass meadows, known to efficiently trap organic and inorganic particles, to investigate the concentrations and dynamics of microplastics in their soil. We assessed microplastic contamination and accumulation in 210Pb dated soil cores collected in Posidonia oceanica meadows at three locations along the Spanish Mediterranean coast, with two sites located in the Almería region (Agua Amarga and Roquetas) and one at Cabrera Island (Santa Maria). Almería is known for its intense agricultural industry with 30 000 ha of plastic-covered …


Persistence Of Biogeochemical Alterations Of Deep-Sea Sediments By Bottom Trawling, S. Paradis, M. Goñi, Pere Masqué, R. Durán, M. Arjona-Camas, A. Palanques, P. Puig Jan 2021

Persistence Of Biogeochemical Alterations Of Deep-Sea Sediments By Bottom Trawling, S. Paradis, M. Goñi, Pere Masqué, R. Durán, M. Arjona-Camas, A. Palanques, P. Puig

Research outputs 2014 to 2021

Bottom trawling grounds have been expanding to deeper areas of the oceans since the mid-XXth century, and mitigating strategies aimed to protect fish stocks, such as temporal trawling closures, have recently been implemented. Here we investigated the biogeochemical properties of sediment from a deep-sea trawling ground in Palamós Canyon (NW Mediterranean) to assess the effects of a 2-months trawling closure in the recovery of sedimentary organic matter. In comparison to untrawled areas, the continuous erosion and sediment mixing in trawling grounds led to coarser reworked sediments impoverished in organic carbon (∼30% loss) and promoted the degradation of labile compounds (52–70% …


Short Communication: Savanna-Forest Boundary On Mount Rinjani, Lombok Island, West Nusa Tenggara, Indonesia, Sutomo, Eddie Van Etten, Rajif Iryadi Jan 2021

Short Communication: Savanna-Forest Boundary On Mount Rinjani, Lombok Island, West Nusa Tenggara, Indonesia, Sutomo, Eddie Van Etten, Rajif Iryadi

Research outputs 2014 to 2021

© 2021, Society for Indonesian Biodiversity. All rights reserved. Sutomo, van Etten E, Iryadi R. 2020. Short communication: Savanna-forest boundary on Mount Rinjani, Lombok Island, West Nusa Tenggara, Indonesia. Biodiversitas 21: 726-731. Seasonally dry tropical forests tend to be bordered by or are mixed with savanna ecosystems. This research investigates the location and nature of forest-savanna boundary on Mt. Rinjani and hypothesizes on potential causes of such boundary formation. The field survey locations were based on MODIS burnt area data. We made 30 plots (50 x 50 m) established along transects to obtain vegetation and environment data across boundaries. For …


Insights Into The Cultured Bacterial Fraction Of Corals, Michael Sweet, Helena Villela, Tina Keller-Costa, Rodrigo Costa, Stefano Romano, David G. Bourne, Anny Cárdenas, Megan J. Huggett, Allison H. Kerwin, Felicity Kuek, Mónica Medina, Julie L. Meyer, Moritz Müller, F. Joseph Pollock, Michael S. Rappé, Mathieu Sere, Koty H. Sharp, Christian R. Voolstra, Nathan Zaccardi, Maren Ziegler, Raquel Peixoto Jan 2021

Insights Into The Cultured Bacterial Fraction Of Corals, Michael Sweet, Helena Villela, Tina Keller-Costa, Rodrigo Costa, Stefano Romano, David G. Bourne, Anny Cárdenas, Megan J. Huggett, Allison H. Kerwin, Felicity Kuek, Mónica Medina, Julie L. Meyer, Moritz Müller, F. Joseph Pollock, Michael S. Rappé, Mathieu Sere, Koty H. Sharp, Christian R. Voolstra, Nathan Zaccardi, Maren Ziegler, Raquel Peixoto

Research outputs 2014 to 2021

Bacteria associated with coral hosts are diverse and abundant, with recent studies suggesting involvement of these symbionts in host resilience to anthropogenic stress. Despite their putative importance, the work dedicated to culturing coral-associated bacteria has received little attention. Combining published and unpublished data, here we report a comprehensive overview of the diversity and function of culturable bacteria isolated from corals originating from tropical, temperate, and cold-water habitats. A total of 3,055 isolates from 52 studies were considered by our metasurvey. Of these, 1,045 had full-length 16S rRNA gene sequences, spanning 138 formally described and 12 putatively novel bacterial genera across …


Factors Driving The Compositional Diversity Of Apis Mellifera Bee Venom From A Corymbia Calophylla (Marri) Ecosystem, Southwestern Australia, Daniela Scaccabarozzi, Kenneth Dods, Thao T. Le, Joel P. A. Gummer, Michele Lussu, Lynne Milne, Tristan Campbell, Ben Pan Wafujian, Colin Priddis Jan 2021

Factors Driving The Compositional Diversity Of Apis Mellifera Bee Venom From A Corymbia Calophylla (Marri) Ecosystem, Southwestern Australia, Daniela Scaccabarozzi, Kenneth Dods, Thao T. Le, Joel P. A. Gummer, Michele Lussu, Lynne Milne, Tristan Campbell, Ben Pan Wafujian, Colin Priddis

Research outputs 2014 to 2021

Bee venom (BV) is the most valuable product harvested from honeybees ($30 - $300 USD per gram) but marginally produced in apiculture. Though widely studied and used in alternative medicine, recent efforts in BV research have focused on its therapeutic and cosmetic applications, for the treatment of degenerative and infectious diseases. The protein and peptide composition of BV is integral to its bioactivity, yet little research has investigated the ecological factors influencing the qualitative and quantitative variations in the BV composition. Bee venom from Apis mellifera ligustica (Apidae), collected over one flowering season of Corymbia calophylla (Myrtaceae; marri) was characterized …


Kelp-Associated Microbes Facilitate Spatial Subsidy In A Detrital-Based Food Web In A Shoreline Ecosystem, Charu Lata Singh, Megan J. Huggett, Paul S. Lavery, Christin Säwström, Glenn A. Hyndes Jan 2021

Kelp-Associated Microbes Facilitate Spatial Subsidy In A Detrital-Based Food Web In A Shoreline Ecosystem, Charu Lata Singh, Megan J. Huggett, Paul S. Lavery, Christin Säwström, Glenn A. Hyndes

Research outputs 2014 to 2021

Microbes are ubiquitous but our knowledge of their effects on consumers is limited in benthic marine systems. Shorelines often form hotspots of microbial and detritivore activity due to the large amounts of detrital macrophytes that are exported from other coastal ecosystems, such as kelp forests, and accumulate in these systems. Shoreline ecosystems therefore provide a useful model system to examine microbial-detritivore interactions. We experimentally test whether bacteria in the biofilm of kelp provide a bottom-up influence on growth and reproductive output of detritivores in shorelines where detrital kelp accumulates, by manipulating the bacterial abundances on kelp (Ecklonia radiata). The growth …


Temporal Variation In The Genetic Composition Of An Endangered Marsupial Reflects Reintroduction History, Rujiporn Thavornkanlapachai, Harriet R. Mills, Kym Ottewell, J. Anthony Friend, W. Jason Kennington Jan 2021

Temporal Variation In The Genetic Composition Of An Endangered Marsupial Reflects Reintroduction History, Rujiporn Thavornkanlapachai, Harriet R. Mills, Kym Ottewell, J. Anthony Friend, W. Jason Kennington

Research outputs 2014 to 2021

The loss of genetic variation and genetic divergence from source populations are common problems for reintroductions that use captive animals or a small number of founders to establish a new population. This study evaluated the genetic changes occurring in a captive and a reintroduced population of the dibbler (Parantechinus apicalis) that were established from multiple source populations over a twelve-year period, using 21 microsatellite loci. While the levels of genetic variation within the captive and reintroduced populations were relatively stable, and did not differ significantly from the source populations, their effective population size reduced 10–16-fold over the duration of this …


Dynamics And Fate Of Blue Carbon In A Mangrove–Seagrass Seascape: Influence Of Landscape Configuration And Land-Use Change, Maria E. Asplund, Martin Dahl, Rashid O. Ismail, Ariane Arias-Ortiz, Diana Deyanova, João N. Franco, Linus Hammar, Arielle I. Hoamby, Hans W. Linderholm, Liberatus D. Lyimo, Diana Perry, Lina M. Rasmusson, Samantha N. Ridgway, Gloria Salgado Gispert, Stéphanie D’Agata, Leah Glass, Jamal Angelot Mahafina, Volanirina Ramahery, Pere Masque, Mats Björk, Martin Gullström Jan 2021

Dynamics And Fate Of Blue Carbon In A Mangrove–Seagrass Seascape: Influence Of Landscape Configuration And Land-Use Change, Maria E. Asplund, Martin Dahl, Rashid O. Ismail, Ariane Arias-Ortiz, Diana Deyanova, João N. Franco, Linus Hammar, Arielle I. Hoamby, Hans W. Linderholm, Liberatus D. Lyimo, Diana Perry, Lina M. Rasmusson, Samantha N. Ridgway, Gloria Salgado Gispert, Stéphanie D’Agata, Leah Glass, Jamal Angelot Mahafina, Volanirina Ramahery, Pere Masque, Mats Björk, Martin Gullström

Research outputs 2014 to 2021

Context: Seagrass meadows act as efficient natural carbon sinks by sequestering atmospheric CO and through trapping of allochthonous organic material, thereby preserving organic carbon (C ) in their sediments. Less understood is the influence of landscape configuration and transformation (land-use change) on carbon sequestration dynamics in coastal seascapes across the land–sea interface. Objectives: We explored the influence of landscape configuration and degradation of adjacent mangroves on the dynamics and fate of C in seagrass habitats. Methods: Through predictive modelling, we assessed sedimentary C content, stocks and source composition in multiple seascapes (km-wide buffer zones) dominated by different seagrass communities in …