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- Department of Agronomy and Horticulture: Faculty Publications (5)
- United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications (5)
- Department of Entomology: Faculty Publications (1)
- Department of Plant Pathology: Faculty Publications (1)
Articles 1 - 12 of 12
Full-Text Articles in Life Sciences
Divergent Phenotypic Response Of Rice Accessions To Transient Heat Stress During Early Seed Development, Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul E. Staswick, Harkamal Walia
Divergent Phenotypic Response Of Rice Accessions To Transient Heat Stress During Early Seed Development, Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul E. Staswick, Harkamal Walia
Department of Agronomy and Horticulture: Faculty Publications
Increasing global surface temperatures is posing a major food security challenge. Part of the solution to address this problem is to improve crop heat resilience, especially during grain development, along with agronomic decisions such as shift in planting time and increasing crop diversification. Rice is a major food crop consumed by more than 3 billion people. For rice, thermal sensitivity of reproductive development and grain filling is well-documented, while knowledge concerning the impact of heat stress (HS) on early seed development is limited. Here, we aim to study the phenotypic variation in a set of diverse rice accessions for elucidating …
Genetic Diversity Of Danthonia Spicata (L.) Beauv. Based On Genomic Simple Sequence Repeat Markers, Chandra S. Thammina, Keenan Amundsen, Shaun B. Bushman, Matthew H. Kramer, Scott E. Warnke
Genetic Diversity Of Danthonia Spicata (L.) Beauv. Based On Genomic Simple Sequence Repeat Markers, Chandra S. Thammina, Keenan Amundsen, Shaun B. Bushman, Matthew H. Kramer, Scott E. Warnke
Department of Agronomy and Horticulture: Faculty Publications
Danthonia spicata (L.) Beauv., commonly known as poverty oatgrass, is a perennial bunch-type grass native to North America. D. spicata is often found in low input turfgrass areas on the East Coast of the United States and has potential for development as a new native low input turfgrass species. Roche 454 sequenced randomly sheared genomic DNA reads of D. spicata were mined for SSR markers using the MIcroSAtellite identification tool. A total of 66,553 singlet sequences (approximately 37.5 Mbp) were examined, and 3454 SSR markers were identified. Trinucleotide motifs with greater than six repeats and possessing unique PCR priming sites …
Prospects Of Genomic Prediction In The Usda Soybean Germplasm Collection: Historical Data Creates Robust Models For Enhancing Selection Of Accessions, Diego Jarquin, James Specht, Aaron Lorenz
Prospects Of Genomic Prediction In The Usda Soybean Germplasm Collection: Historical Data Creates Robust Models For Enhancing Selection Of Accessions, Diego Jarquin, James Specht, Aaron Lorenz
Department of Agronomy and Horticulture: Faculty Publications
The identification and mobilization of useful genetic variation from germplasm banks for use in breeding programs is critical for future genetic gain and protection against crop pests. Plummeting costs of next-generation sequencing and genotyping is revolutionizing the way in which researchers and breeders interface with plant germplasm collections. An example of this is the high density genotyping of the entire USDA Soybean Germplasm Collection. We assessed the usefulness of 50K SNP data collected on 18,480 domesticated soybean (G. max) accessions and vast historical phenotypic data for developing genomic prediction models for protein, oil, and yield. Resulting genomic prediction models explained …
Spatial Genetic Variation Among Spodoptera Frugiperda (Lepidoptera: Noctuidae) Sampled From The United States, Puerto Rico, Panama, And Argentina, Difabachew K. Belay, Pete L. Clark, Steven R. Skoda, David J. Isenhour, Jaime Molina-Ochoa, Claudia Gianni, John E. Foster
Spatial Genetic Variation Among Spodoptera Frugiperda (Lepidoptera: Noctuidae) Sampled From The United States, Puerto Rico, Panama, And Argentina, Difabachew K. Belay, Pete L. Clark, Steven R. Skoda, David J. Isenhour, Jaime Molina-Ochoa, Claudia Gianni, John E. Foster
Department of Entomology: Faculty Publications
Spatial genetic variability of the fall armyworm, Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae), was studied by collecting samples from 31 locations in the United States, Argentina, Panama, and Puerto Rico, and then using amplified fragment length polymorphism to detect genetic variation. Analysis of molecular variance showed significant genetic variation in fall armyworm among all (28%) sample locations and individuals within (71%) sample locations; genetic variation of fall armyworm was minimal between sample locations grouped into regions. The pairwise fixation index (FST) comparisons showed significant genetic differentiation (0.288) among the 31 locations. However, dendrograms of results from cluster …
Genetic Variability Among Isolates Of Fusarium Oxysporum From Sugar Beet, A. L. Hill, P. A. Reeves, R. L. Larson, A. L. Fenwick, L. E. Hanson, L. Panella
Genetic Variability Among Isolates Of Fusarium Oxysporum From Sugar Beet, A. L. Hill, P. A. Reeves, R. L. Larson, A. L. Fenwick, L. E. Hanson, L. Panella
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Fusarium yellows, caused by the soil-borne fungus Fusarium oxysporum f. sp. betae (Fob), can lead to significant yield losses in sugar beet. This fungus is variable in pathogenicity, morphology, host range and symptom production, and is not a well characterized pathogen on sugar beet. From 1998 to 2003, 86 isolates of F. oxysporum and 20 other Fusarium species from sugar beet, along with four F. oxysporum isolates from dry bean and five from spinach, were obtained from diseased plants and characterized for pathogenicity to sugar beet. A group of sugar beet Fusarium isolates from different geographic areas (including nonpathogenic and …
Genetic Diversity In Laboratory Colonies Of Western Corn Rootworm (Coleoptera: Chrysomelidae), Including A Nondiapause Colony, Kyung Seok Kim, B. Wade French, Douglas V. Sumerford, Thomas W. Sappington
Genetic Diversity In Laboratory Colonies Of Western Corn Rootworm (Coleoptera: Chrysomelidae), Including A Nondiapause Colony, Kyung Seok Kim, B. Wade French, Douglas V. Sumerford, Thomas W. Sappington
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Laboratory-reared western corn rootworms, Diabrotica virgifera virgifera, from colonies maintained at the North Central Agricultural Research Laboratory (NCARL) in Brookings, SD, are used extensively by many researchers in studies of the biology, ecology, behavior, and genetics of this major insect pest. A nondiapause colony developed through artificial selection in the early 1970s is particularly attractive for many studies because its generation time is much shorter than that of typical diapause colonies. However, the nondiapause colony has been in culture for ≈190 generations without out-crossing. We compared variation at six microsatellite loci among individuals from the NCARL nondiapause colony (≈190 …
Phycodnaviruses: A Peek At Genetic Diversity, David Dunigan, Lisa A. Fitzgerald, James L. Van Etten
Phycodnaviruses: A Peek At Genetic Diversity, David Dunigan, Lisa A. Fitzgerald, James L. Van Etten
Department of Plant Pathology: Faculty Publications
The family Phycodnaviridae encompasses a diverse collection of large icosahedral, dsDNA viruses infecting algae. These viruses have genomes ranging from 160 to 560 kb. The family consists of six genera based initially on host range and supported by sequence comparisons. The family is monophyletic with branches for each genus, but the phycodnaviruses have evolutionary roots that connect with several other families of large DNA viruses, referred to as the nucleocytoplasmic large DNA viruses (NCLDV). The genomes of members in three genera in the Phycodnaviridae have recently been sequenced and the purpose of this manuscript is to summarize these data. The …
Genic Microsatellite Markers Derived From Est Sequences Of Switchgrass (Panicum Virgatum L.), Christian M. Tobias, Daniel M. Hayden, Paul Twigg, Gautam Sarath
Genic Microsatellite Markers Derived From Est Sequences Of Switchgrass (Panicum Virgatum L.), Christian M. Tobias, Daniel M. Hayden, Paul Twigg, Gautam Sarath
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Switchgrass is a large, North American, perennial grass that is being evaluated as a potential energy crop. There is a need to assess genetic diversity in stored accessions and in remaining native stands to assist breeding and conservation efforts. Marker development will also be necessary for genetic linkage mapping. Toward this end, 32 switchgrass genic di-, tri- and tetranucleotide repeat microsatellites were identified from expressed sequence tags (ESTs). These microsatellites were used to screen individuals from two different named cultivars. The markers displayed a high level of polymorphism consistent with the tetraploid, allogamous behaviour of the cultivars tested.
Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan
Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan
Department of Agronomy and Horticulture: Faculty Publications
Soybean has undergone several genetic bottlenecks. These include domestication in Asia to produce numerous Asian landraces, introduction of relatively few landraces to North America, and then selective breeding over the past 75 years. It is presumed that these three human-mediated events have reduced genetic diversity. We sequenced 111 fragments from 102 genes in four soybean populations representing the populations before and after genetic bottlenecks. We show that soybean has lost many rare sequence variants and has undergone numerous allele frequency changes throughout its history. Although soybean genetic diversity has been eroded by human selection after domestication, it is notable that …
Boll Weevil (Anthonomus Grandis Boheman) (Coleoptera: Curculionidae) Dispersal In The Southern United States: Evidence From Mitochondrial Dna Variation, Kyung Seok Kim, Thomas W. Sappington
Boll Weevil (Anthonomus Grandis Boheman) (Coleoptera: Curculionidae) Dispersal In The Southern United States: Evidence From Mitochondrial Dna Variation, Kyung Seok Kim, Thomas W. Sappington
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
An understanding of boll weevil (Anthonomus grandis Boheman) dispersal behavior is essential to characterizing and responding to the threat of migration into eradication zones. Genetic variation in boll weevil mitochondrial DNA (mtDNA) was sampled and analyzed to make inferences on the magnitude and geographic pattern of genetic differentiation among weevil populations from 20 locations across eight U.S. states and northeast Mexico. Polymerase chain reaction (PCR)-restriction fragment length polymorphisms (RFLPs) analysis was conducted on a 12.4-kb amplicon of mtDNA from each of 419 individuals.A total of 28 distinct mtDNA haplotypes, 17 of which were unique to single locations, were identified …
Application Of Sequence-Related Amplified Polymorphism Markers For Characterization Of Turfgrass Species, Hikmet Budak, Bob Shearman, Roch E. Gaussoin, Ismail M. Dweikat
Application Of Sequence-Related Amplified Polymorphism Markers For Characterization Of Turfgrass Species, Hikmet Budak, Bob Shearman, Roch E. Gaussoin, Ismail M. Dweikat
Department of Agronomy and Horticulture: Faculty Publications
A simple marker technique called sequence-related amplified polymorphism (SRAP) provides a useful tool for estimation of genetic diversity and phenetic relationships in natural and domesticated populations. Previous studies and our initial screen show SRAP is highly polymorphic and more informative when compared to AFLP, RAPD and SSR markers. In this study, applicability of the SRAP markers to obtain an overview of genetic diversity and phenetic relationships resent among cool-season (C3) and warm-season (C4) turfgrass species and their relationship with other Gramineae species were tested. Phenetic trees based on genetic similarities (UPGMA, N-J) were consistent with known taxonomic relationships. In some …
Comparison Of Restriction Fragment Length Polymorphisms In Chloroplast Dna Of Five Leafy Spurge (Euphorbia Spp.) Accessions, Scott Nissen, Robert A. Masters, Donald Lee, Martha Rowe
Comparison Of Restriction Fragment Length Polymorphisms In Chloroplast Dna Of Five Leafy Spurge (Euphorbia Spp.) Accessions, Scott Nissen, Robert A. Masters, Donald Lee, Martha Rowe
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Chloroplast DNA (cpDNA) restriction fragment length polymorphisms (RFLPs) were analyzed to assess genetic variation and relatedness among selections of North American and Eurasian leafy spurge. Leafy spurge accessions from Nebraska, Montana, Russia, Italy, and Austria were evaluated. Total DNA was extracted from young leaves and digested with the restriction endonuclease, EcoRI. CpDNA fragment patterns were determined by Southern blot analysis using mung bean cpDNA probes. Colinearity between the mung bean and leafy spurge chloroplast genomes was indicated by the observation that common fragments were hybridized by adjacent probes. Minimum estimates of chloroplast genome size for the five leafy spurge …