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Comparison Of Three Assembly Strategies For A Heterozygous Grapevine Genome Assembly, Sagar Patel, Erliang Zeng, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Anne Fennell Jan 2018

Comparison Of Three Assembly Strategies For A Heterozygous Grapevine Genome Assembly, Sagar Patel, Erliang Zeng, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Anne Fennell

Comparison of Three Assembly Strategies for a Heterozygous Grapevine Genome Assembly

Each folder includes the following files.

  1. Assembly.fa: Genome assembly in scaffolds.
  2. Blast2GO_results.b2g: The full annotation of coding sequences.
  3. Coding_sequences.fa: The predicted coding sequences from masked assembly.
  4. Gene_models.gff: Gene predictions from masked assembly.
  5. Masked_assembly.fa: The masked genome assembly.
  6. Protein.fa: The predicted protein sequences.

PLAT*_GC contains chromosomal assembly and annotation as "pseudo_chromosomal_assembly" folder.

SnpEff folder contains results from SnpEff as SnpEff_summary, genes affected are described as vini_snp.txt.genes and vini_snpeff is output from SnpEff.

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