Life Sciences Commons^™

Assessment Of Enzyme Stability In Subsurface Sediments By Computational Methods, Kambiz Kalhor

Masters Theses

The microorganisms found in marine subseafloor sediment play a vital role in global carbon and nitrogen cycles, with an estimated 2.9×10²⁹ cells, accounting for about 0.6% of Earth’s total living biomass. These microbes grow at a very slow rate, with carbon turnover occurring over the course of years to thousands of years, about six orders of magnitude slower than sulfate reducing bacteria in pure culture. These slow metabolic rates suggest that the enzymes they produce must also have extended lifespans in order to be effective over such long periods of time. As a result, these enzymes are likely to …

Operation Shark: Addressing The Negative Portrayal Of Sharks In Media, Michael R. O'Shea

Masters Theses

Sharks are some of the most well adapted and effective animals in the animal kingdom. Unfortunately, they are also some of the most feared. For many people the word shark evokes images of vicious attacks like those seen in movies such as Jaws. Sharks have also been negatively portrayed in the media. This negative portrayal of sharks has led to misconceptions about sharks that have damaged their populations. Efforts have been made to raise awareness and fight common misconceptions of sharks. However, many people still hold on to the incorrect ideas they have about sharks. This thesis will examine the …

Winter Roost Selection Of Eastern Red Bats And Impacts Of Non-Growing Season Prescribed Fire On Foraging Activity Of Forest Roosting Bats In Tennessee, Ashley D. Epstein

Masters Theses

With an increase in wind energy development and continued deforestation and habitat degradation, eastern red bats (Lasiurus borealis; LABO) and other migratory foliage roosting bats (hoary bat [Lasiurus cinereus; LACI], silver-haired bat [Lasionycteris noctivagans; LANO]) are at risk of severe population declines, potentially leading to the need for protection under the Endangered Species Act. While studies have been done examining the ecology of these species, there is still a lack of research on winter roosting and foraging behaviors. This research aims to fill some of those knowledge gaps by 1) Examining roost use (i.e., trees vs. litter) …

Evaluation Of Regression Methods And Competition Indices In Characterizing Height-Diameter Relationships For Temperate And Pantropical Tree Species, Sakar Jha

Masters Theses

Height-diameter relationship models, denoted as H-D models, have important applications in sustainable forest management which include studying the vertical structure of a forest stand, understanding the habitat heterogeneity for wildlife niches, analyzing the growth rate pattern for making decisions regarding silvicultural treatments. Compared to monocultures, characterizing allometric relationships for uneven-aged, mixed-species forests, especially tropical forests, is more challenging and has historically received less attention. Modelling how the competitive interactions between trees of varying sizes and multiple species affects these relationships adds a high degree of complexity. In this study, five regression methods and five distance-independent competition indices were evaluated for …

Influence Of Attack Performance On The Ovc Volleyball Regular Seasons 2022 & 2023, Ignacio Valdemoros

Masters Theses

Understanding the outcome of volleyball games is necessary for coaches before, after, and during a season. There are several ways to gain this understanding, but statistical analysis is fundamental to see the minimum patterns of behavior that influence wins and losses in Volleyball. Furthermore, this analysis helps identify the optimal approach to achieving a goal and determining the most effective alternative to success. Scoring points in Volleyball involves three key skills: serving, blocking, and attacking. Among these skills, attacking plays the most relevant role in determining the outcome of a match. The position on the court (e.g. Outside Hitter, Middle …

Targeting Macrophytes: Increased Water Quality Through Optimized Vegetation Considerations For Constructed Wetlands, Austin Mcbrady

Masters Theses

This study of constructed wetland design investigated relationships between macrophyte species selection and planting density for water quality improvement. A lab-scale wetland was compared against a pilot-scale wetland in San Antonio, Texas at Mitchell Lake to measure differences in effluent water quality improvement using three native macrophyte species. Using a novel, two-phase method, a targeting macrophyte was identified from among other species based on its marked capability for improving water quality factors, then was planted in varied majority densities to compare differences in treatment effectiveness. The results of this study showed that this complimentary approach to wetland design displayed significant …

The Impacts Of Tilled-In Biodegradable Plastic Mulch On Soil Microbial Communities, Corissa L. Martin

Masters Theses

Plastics mulch films are used in agriculture to help increase crop production by regulating soil water retention and soil temperature while also preventing weed growth. Despite these benefits, plastic mulches have led to higher levels of microplastic pollution as weathering occurs. In response to this issue, biodegradable plastic mulches (BDMs) have been introduced to help reduce plastic pollution as they are designed to be tilled into soil after each growing season to continue degradation. Degradation of these mulch films is dependent on climate and, in some areas, complete degradation can take years. Since some biodegradable plastic mulches are made of …

Assessing The Effects Of The Spring Hunting Season Start Date On Wild Turkey Seasonal Productivity And Hunter Behavior, Joseph Quehl

Masters Theses

Many states throughout the Southeast have documented declines in wild turkey (Meleagris gallopavo) harvest and estimates of recruitment in poult-per-hen ratios. Wild turkey populations are driven by seasonal productivity, so the decline in these parameters may indicate a decline in the overall population. One hypothesis as to why we are seeing a reduction in productivity and a potential population decline is that the spring hunting season is disrupting the reproductive cycle by harvesting too many males before they have had the opportunity to breed, or by harvesting dominant males and disrupting the social hierarchy of the flock. Our …

Metagenomic Profiling Of Cave Biofilms, With A Focus On Chemolithoautotrophy And Pseudonocardiaceae, John A. Fulginiti

Masters Theses

The dark, humid, and nutrient depleted conditions of caves set limitations on habitability and result in microbial diversity and community structures that differ from surface environments. Recent studies investigating cave microbiomes reveal that Pseudonocardiaceae, a family of bacteria belonging to the phylum Actinomycetota, are abundant in cave sediment and on rocks as subaerial biofilms, however little work has been done on attempting to characterize their diversity and metabolism within the environment. This study used shotgun metagenomics to characterize the functional potential of Pseudonocardiaceae, as well as other cave microbes, in cave site KN14 located in Knox County, Tennessee. Functions of …

Reintroducing Hemp (Rongony) In The Material Palette Of Madagascar: A Study On The Potential Of Hemp Clay Components And Its Impact On Social And Ecological Communities., Henintsoa Thierry Andrianambinina

Masters Theses

When mentioning the word hemp, especially in the local language of Madagascar, the literal translation does not set it apart from marijuana, as they are both called “rongony” - creating the stigma around hemp as the negative stereotype of marijuana. However, the material has been used by the ancestors of Madagascar, as well as across cultures, in its fibrous form to produce fabrication like textile goods and packaging. During colonization, the prohibition of hemp intensified, and since then, any activity related to either of these plants is prohibited and will end in severe punitive measures. This thesis explores the strengths …

Unearthing Complexity: Tangible Histories Of Water And Earth, Alexis Violet

Masters Theses

Unearthing Complexity investigates conceptions of time and surface through geological stories of the water and earth. Building on theories of deep time, hydrofeminism, critical zones, and grounding, I hope to foster a deeper awareness of time scales other than our own and a more tangible understanding of the embodied experience of matter in the universe. Working toward a new literacy of the water and earth in which they are recognized as living, changing bodies to which we are inherently tied at a molecular level, the site of this multiscalar inquiry occurs in the coastal zones of the Narragansett Bay where …

Fungi In Flux | Designing Regenerative Materials And Products With Mycelium, Arvind Bhallamudi

Masters Theses

As the world grapples with the escalating crisis of climate threats and environmental degradation, this research delves into the synergistic potential of design and biology, developing safe and sustainable materials for applications in prototyping, furniture and interior design. Harnessing the power of a unique organism - fungi, the study proposes an accessible, efficient, and resilient material resource system. It utilizes local waste streams and mycelium (the vegetative part of fungi) to grow functional structures. An experimental and small-scale protocol is modeled by testing bio-fabrication and bio-printing methods. The composites' performance qualities and characteristics are evaluated through mechanical testing and a …

Impact Of Cover Crop Species Diversity On Soil Nutrient Availability And Crop Productivity, Amanda Kramer

Masters Theses

Cover crops provide multiple environmental benefits that improve both soil and water quality; however, farmers only utilize them on approximately 5% of harvested U.S. cropland. Low adoption rates are attributed to yield impact concerns, seed and planting costs, and lack of advocacy. This study, which began in October 2019, assessed the effects of nitrogen rate and cover crop diversity on weed biomass, soil coverage, in-situ residue decomposition, soil nitrogen and phosphorus availability, and cash crop yield to better understand the costs and benefits of cover crop adoption at two locations in Tennessee (Milan and Spring Hill). Treatments were replicated 4 …

Fertilizer Waste Mistreatment Facilities: Investigating The Barrier That Keep Waste In And Attention Out At Central Florida's Phosphogypsum Stacks., Harsha Devaraj

Masters Theses

This project investigates the physical and narrative barriers constructed by the phosphate mining and processing industry to dissuade public engagement with its phosphogypsum sites in Central Florida, USA. The barriers around PG utilize decades of misinformation, racial geographies, and misrepresentations of scale, origin, and risk to create powerful narratives about how we should imagine and relate to these materials. These barriers hinder sustained public attention to their sites, enabling extractive industries to expand while avoiding oversight and responsibility. Attention to how these barriers around phosphogypsum are constructed allows us to recognize these strategies at work in how we see and …

Genetic Structure Of Urban White-Tailed Deer In West Michigan, Jacob David Brand

Masters Theses

In urban areas, green spaces are used by humans and wildlife. The proximity between them can lead to both positive and negative interactions, which can make managing urban wildlife difficult. Managers are challenged due to conflicts between wildlife population sizes that can be naturally supported versus those that are socially tolerable. White-tailed deer (Odocoileus virginianus) thrive in urban environments because their habitat requirements are met within green spaces and backyard vegetation. Matrilineal groups of urban white-tailed deer live within the same areas, at times forming high densities that can lead to the spread of diseases or environmental pests, including hemlock …

Low-Head Dam Removal Increases Functional Diversity Of Stream Fish Assemblages, Adam Christopher Jones

Masters Theses

Despite the growing number of dam removals to date, very few have been studied to understand their impacts on stream fish communities. Despite being the most common type of dam in the U.S., an even smaller proportion of studies focus on the impacts of low-head dam removals, instead, focusing on the impacts of removal of larger dams. In this study, two previously impounded Illinois rivers were monitored to assess the impacts of low-head dam removal on the functional assemblage of stream fishes. This was accomplished by aggregating fishes into habitat and reproductive guilds, relating community changes to habitat, environmental metrics, …

Influence Of Physical Variability Of Highly Weathered Sedimentary Rock On Nitrate In Area 3 Of The Enigma Field Research Site At Y-12, Erin Kelly

Masters Theses

Uranium processing and waste storage in unlined waste ponds leached contaminants into the groundwater at Y-12, Oak Ridge, Tennessee, from the 1950s to 1980s. Groundwater wells near the S-3 ponds have had the highest nitrate concentrations of groundwater anywhere in the world (>10,000 mg/L). For reference, the maximum contaminant level for nitrate in drinking water set by the U.S. Environmental Protection Agency is 10 mg/L. Since 2012, the ENIGMA (Ecosystems and Networks Integrated with Genes and Molecular Assemblies) group has been characterizing, monitoring, and conducting field experiments to understand the interactions between contaminants, microbes, and the subsurface. The goals …

Association Between Stream Impairment By Mercury And Superfund Sites In The Conterminous Usa, Karessa L. Manning

Masters Theses

Mercury is a natural element that can cause harm to the brain, heart, kidneys, lungs, and immune system, especially to fetuses developing in the womb. Many natural and anthropogenic factors contribute to mercury in the environment, such as geologic deposits, landfills, gold and silver mining operations, cement production, and atmospheric deposition. Mercury has been identified as a contaminant of concern at many National Priority List (NPL) sites, however, studies on contamination at NPL sites are often only conducted on a local level. This study was to analyze the potential connection between mercury-contaminated NPL sites and the presence of mercury impaired …

Preclassic Cultural Eutrophication Of Lake Petén Itzá, Lowland Guatemala, By The Early Maya Of Nixtun-Ch'ich', Brooke A. Birkett

Masters Theses

"Paleolimnological evidence indicates the ancient Maya transformed lowland terrestrial ecosystems by felling forest vegetation to construct large civic-ceremonial centers and expand agriculture. The effects of prehistoric Maya land alterations on lake trophic status, however, remain poorly understood. We analyzed a 515-cm-long sediment core from Lake Petén Itzá, lowland Guatemala, to infer paleoenvironmental changes resulting from Maya occupation of the riparian archaeological site of Nixtun-Ch'ich'. Substantial increases in charcoal and fecal stanol concentrations indicate Maya occupation of the Candelaria Peninsula by the late Early Preclassic period beginning ca. 1400 cal yr Before the Common Era (hereafter BCE), despite scant archaeological evidence …

Predator Scent And Presence Alter Mammal Assemblages In The Missouri Ozarks, Usa, Cara Jean Yocom-Russell

Masters Theses

"Species that are vulnerable to predation exhibit a host of behavioral and physiological adaptations toward the avoidance of this outcome: Heightened awareness of surroundings through visual, olfactory, and auditory senses are common ways in which these species avoid detection by predators. While links between direct predator-prey relationships are well established, less is known about how predators can shape overall community structure or the populations of secondary or less frequently consumed prey items. As humans expand into rural areas, the frequency of wildlife conflicts rises. In response, humans look to prevent these events with a variety of methods. One such method …

Neural Network Supervised And Reinforcement Learning For Neurological, Diagnostic, And Modeling Problems, Donald Wunsch Iii

Masters Theses

“As the medical world becomes increasingly intertwined with the tech sphere, machine learning on medical datasets and mathematical models becomes an attractive application. This research looks at the predictive capabilities of neural networks and other machine learning algorithms, and assesses the validity of several feature selection strategies to reduce the negative effects of high dataset dimensionality. Our results indicate that several feature selection methods can maintain high validation and test accuracy on classification tasks, with neural networks performing best, for both single class and multi-class classification applications. This research also evaluates a proof-of-concept application of a deep-Q-learning network (DQN) to …

Carbon Metabolism In Cave Subaerial Biofilms, Victoria E. Frazier

Masters Theses

Subaerial biofilms (SABs) grow at the interface between the atmosphere and rock surfaces in terrestrial and subterranean environments around the world. Multi-colored SABs colonizing relatively dry and nutrient-limited cave surfaces are known to contain microbes putatively involved in chemolithoautotrophic processes using inorganic carbon like carbon dioxide (CO₂) or methane (CH₄). However, the importance of CO₂ and CH₄ to SAB biomass production has not been quantified, the environmental conditions influencing biomass production and diversity have not been thoroughly evaluated, and stable carbon and nitrogen isotope compositions have yet to be determined from epigenic cave SABs. …

Conservation Of Terrestrial Salamanders Through Hemlock Woolly Adelgid Management In Eastern Hemlock Forests Within Great Smoky Mountains National Park, Jonathan Lawrence Cox

Masters Theses

Hemlock woolly adelgid (Adelges tsugae; HWA), an invasive aphid-like arthropod, was first documented on the east coast of the United States in the 1950s. HWA is an herbivore which primarily feeds at the needle base of hemlock tree species (Pinaceae: Tsuga). With no evolutionary defenses and few biotic controls, the eastern and Carolina hemlock (Tsuga canadensis and Tsuga carolinensis) serve as the primary diet of HWA in eastern North America. The invasive pest began to spread rapidly throughout the hemlock’s range causing defoliation and death of the trees within 4 – 10 years. With the …

From Drones To Soil Cores: Comprehensive Ecological Assessments For Enhancing Conservation Management Of Urban Forested Natural Areas, Mia T. Wavrek

Masters Theses

Urban natural areas are vegetated areas within cities that exhibit characteristics of non-urban natural areas in that they have relatively high levels of self-regulation (low or no level of management) of natural ecosystem processes and exhibit high taxonomic, genetic, and structural diversity. When these areas take the form of urban parkland, they are often managed for their social benefits to urban residents, while their ecological potential remains underutilized. Growing interest in enhancing biodiversity conservation in cities has highlighted the importance of improving the ecological planning and management of urban natural areas, particularly forested natural areas. For the variety of agencies …

Influence Of Living Plant Roots And Mycorrhizal Hyphae On Soil Hydraulic Properties, Katelyn M. Marcacci

Masters Theses

The interrelationships between vegetation, soil, and water are fundamental in evaluating the projected impacts of global climate change. Many predictive models require soil hydraulic parameters as inputs. As most hydraulic parameter datasets are for repacked soil, the influence of vegetation on hydraulic parameters is not thoroughly understood. Living roots and mycorrhizal fungi cause physicochemical alterations in soils. Quantifying how vegetation influences soil hydraulic parameters is necessary to more accurately simulate soil water dynamics in climate models.

Laboratory experiments were conducted to test if the presence of roots and roots inoculated with mycorrhizal fungi have a significant effect on the saturated …

Design, Synthesis, And Characterization Of Chemical Tools To Study Peroxisomal Import, Jhalak N. Timilsena

Masters Theses

Peroxisomes are dynamic and interconnected single lipid membrane bound organelles found in the eukaryotic cells which are involved in various biochemical processes including the b-oxidation of very long chain and branched chain fatty acids, metabolism of reactive oxygen and nitrogen species, and reduction of hydrogen peroxide among others. These organelles are known to host numerous proteins and enzymes depending on the cellular environment. All of the proteins needed in the peroxisomes are encoded in the nucleus and synthesized in the cytosol which are then transported to the peroxisomes with the help of a sophisticated protein-transport machinery. Pex5 is one of …

Aquatic Plants And Their Application To Successful Floating Treatment Wetlands, Katherine May Mazanec

Masters Theses

“This research aims to mitigate eutrophication of freshwater habitats affected by urban stormwater runoff. Two highly impacted urban ponds near the Missouri S&T campus in Rolla were the focus of this research on the application of floating treatment wetlands (FTWs). An FTW consists of a man-made floating mat that is planted with emergent or floating macrophytes. The plants grow on the mat and their roots extend into the water column below the mat. Plant tissues, especially roots in direct contact with the water, take up nutrients, act as biofilm growth sites, and may facilitate precipitation of nutrients. With urbanization, ponds …

Evaluation Of The Symbiotic Relation Between Endophyte And Poplar Trees Exposed To Landfill Leachate, Catalina Vega Hurtado

Masters Theses

“The contamination of soil and groundwater from leachate leakage from landfill has turned, nowadays, into a global public issue. One of the main concerns about this pollutant is the potential threat to human and ecosystem health. The current research studied endophyte bacteria in association with poplar trees (Populus sp.), as a method of bioremediation of landfill leachates. The objective of the project was to identify treatment strategies that may improve plant performance (survival rates, plant fitness, and degradation efficacy) with the purpose of being implemented in phytoremediation plots, aimed to intercept and treat landfill leachate, before the contamination of watershed. …

Impacts Of Plant-Microbe Interactions On Seedling Performance In A Riparian Forest Invaded By Lonicera Maackii, Taylor E. K. Strehl

Masters Theses

Soil microbes have profound impacts on plant growth and survival and can either promote or inhibit plant dominance. Exotic plants are often strongly invasive because they have escaped their natural enemies, potentially including antagonistic soil microbes. I examined how the invasive shrub Lonicera maackii and a common native tree, Acer negundo, responded to soil microbial communities to determine the role of soil microbes in regulating invasion success. This was done by growing both species with microbes from invaded (L. maackii) and uninvaded (A. negundo) soils collected from three locations within a riparian forest. Seedlings were …

Identifying Priority Conservation Areas And Strategies For Myotis Sodalis (Chiroptera: Vespertilionidae) Via Habitat And Connectivity Modeling, Ashleigh B. Cable

Masters Theses

Myotis sodalis, the Indiana bat, is a federally endangered bat species in the United States of America (USA). Conservation efforts are typically focused at identified maternity sites at local scales, however, the species is a regional migrant that interacts with its environment at multiple spatial scales. We are limited in our knowledge of landscape-level requirements of this species, especially in large areas such as Illinois, USA, where a wide range of environmental and landscape conditions exist. Many previous M. sodalis habitat studies have limited their focus to smaller spatial scales. Due to limitations in funding, personnel, and time, it …