Life Sciences Commons^™

Host-Pathogen Interactions In A Changing World: Microbes, Mucosal Defenses, And Multiple Hosts, Brandon C. Labumbard

Graduate Doctoral Dissertations

As fungal diseases continue to emerge, research increasingly focuses on host-microbiome interactions and links to disease. Certain skin-associated microbes may benefit hosts by protecting them from invading pathogens. Seasonal changes in the host environment can also result in shifts in the microbial community and pathogen virulence – potentially influencing disease dynamics. I investigated how cutaneous microbial communities differ across hosts, seasons, and Batrachochytrium dendrobatidis (Bd) infection status by sequencing the microbial communities of 1,100 leopard frogs at five locations across the US. Percent anti-Bd function varied seasonally and with Bd infection status. Bacterial communities also varied across locations and time. …

Understanding The Impacts Of Anthropogenic Effects An Habitat Variability Interactions On Maine's Rocky Intertidal Ecosystem, Laura Braun

Electronic Theses and Dissertations

The rocky intertidal ecosystem is an important ecological and cultural aspect of the picturesque Maine coast, playing a vital role in not only Maine’s coastal ecosystem, but also to Maine’s economy. It’s distinct community structure along the sharp elevational gradient and the presence of daily stressors (wave action, heat, and desiccation), make the rocky intertidal ecosystem an important model ecosystem to monitor for effects from anthropogenic impacts. In this thesis, I describe attempts to monitor and understand the impacts of two of these anthropogenic impacts on this system: climate change and industrial harvesting of Ascophyllum nodosum along Maine’s coast. For …

Carbon Dioxide Emissions From Deadwood In Forests Of The Northeastern United States, Zoe Read

Electronic Theses and Dissertations

As the climate changes, understanding the sources and sinks of greenhouse gases such as carbon dioxide (CO₂) is increasingly important. However, several components of the carbon cycle within forests remain poorly understood. For example, knowledge gaps exist in our understanding of CO₂ emissions from coarse woody material (CWM; logs and stumps), including how emissions change over time, how they are influenced by environmental variables, and how they compare to soil and ecosystem-level CO₂ emissions.

To fill these knowledge gaps, we examined CO₂ emissions from CWM at three sites. We sampled 18 red spruce (Picea …

Next-Generation Sequencing Shows Increasing Temperatures Affect Stream Fungal Communities, Regan Hodgson

Electronic Theses and Dissertations

Under climate change predictions, surface air temperature is expected to continue to rise and will likely affect functioning of stream ecosystems and microbial communities. Aquatic hyphomycetes are key fungal decomposers of plant litter in headwater streams controlling carbon, energy, and nutrient flows to higher trophic levels. This project addressed the effects of temperature on stream fungal communities in two recently conducted experiments (microcosm and streamside channel studies) using Illumina sequencing. The objectives were to determine (1) if temperature affects community structure of stream fungi based on relative abundances of ITS2 rDNA sequences, (2) if the effects of temperature on aquatic …

Towards Structured Planning And Learning At The State Fisheries Agency Scale, Caleb A. Aldridge

Theses and Dissertations

Inland recreational fisheries has grown philosophically and scientifically to consider economic and sociopolitical aspects (non-biological) in addition to the biological. However, integrating biological and non-biological aspects of inland fisheries has been challenging. Thus, an opportunity exists to develop approaches and tools which operationalize planning and decision-making processes which include biological and non-biological aspects of a fishery. This dissertation expands the idea that a core set of goals and objectives is shared among and within inland fisheries agencies; that many routine operations of inland fisheries managers can be regimented or standardized; and the novel concept that current information and operations can …

Larval Ecology Of Atlantic Bluefin Tuna (Thunnus Thynnus): New Insights From Otolith Microstructure, Biotic, And Abiotic Analyses From The Gulf Of Mexico And Mediterranean Sea, Estrella Malca

All HCAS Student Capstones, Theses, and Dissertations

Atlantic bluefin tuna (ABT), Thunnus thynnus, spawn in the Gulf of Mexico (GoM) and the Mediterranean Sea (MED). Spawning occurs within narrow temporal and environmental parameters. Efforts to characterize growth of ABT in wild conditions revealed a wide range of growth variability during the early life stages. This series of studies examined potential biotic and abiotic influences of larval growth from seven ABT cohorts, and identified several key drivers of growth for this commercially valuable species. A detailed investigation of larval dynamics using otolith microstructure was conducted as follows. First, companion growth curves and stable isotope analysis from the same …

Exposure Of Egyptian Rousette Bats (Rousettus Aegyptiacus) And A Little Free-Tailed Bat (Chaerephon Pumilus) To Alphaviruses In Uganda, Rebekah C. Kading, Erin M. Borland, Eric C. Mossel, Teddy Nakayiki, Betty Nalikka, Jeremy P. Ledermann, Mary B. Crabtree, Nicholas A. Panella, Luke Nyakarahuka, Amy T. Gilbert, Julian C. Kerbis-Peterhans, Jonathan S. Towner, Brian R. Amman, Tara K. Sealy, Barry R. Miller, Julius J. Lutwama, Robert M. Kityo, Ann M. Powers

USDA Wildlife Services: Staff Publications

The reservoir for zoonotic o’nyong-nyong virus (ONNV) has remained unknown since this virus was first recognized in Uganda in 1959. Building on existing evidence for mosquito bloodfeeding on various frugivorous bat species in Uganda, and seroprevalence for arboviruses among bats in Uganda, we sought to assess if serum samples collected from bats in Uganda demonstrated evidence of exposure to ONNV or the closely related zoonotic chikungunya virus (CHIKV). In total, 652 serum samples collected from six bat species were tested by plaque reduction neutralization test (PRNT) for neutralizing antibodies against ONNV and CHIKV. Forty out of 303 (13.2%) Egyptian rousettes …

Aquaculture In Africa: Aquatic Animal Welfare, Impact On The Environment And The Sustainability Of The Sector, Mwenda M. Mbaka, Janice H. Cox, Stephen Ronan

Aquaculture

The African aquaculture sector recorded the fastest growth in the world between 2006-2018, averaging 10% or more, and is expected to partially fill the growing fish supply-demand gap up to 2063. In 2018, there were about 1.2 million aquafarmers across the continent, an increase from 920 thousand in 2014. According to the African Development Bank, expansion of aquaculture in Africa is hampered by "the overwhelming predominance of tilapia farming, which relies heavily on the production of fingerlings from a limited number of genetically improved strains that are resistant to the many diseases affecting this species, and on the production of …

Oak Savanna Restoration And Climate Change Mitigation Through Silvopasture In Minnesota, James Siems

Environmental Studies Student Work

Reducing emissions of world food systems will be critical to combatting climate change. Silvopasture systems, which integrate managed forests with pastureland, have been shown to be a more sustainable alternative to traditional livestock production and have the ancillary benefit of diversifying the sources of income for farmers. Silvopasture may also have the capacity to serve as a mechanism for ecological restoration. This paper combines existing literature with an interview of a farmer who is engaging in silvopasture to evaluate the potential of silvopasture as means to restore Minnesota’s disappearing oak savanna ecosystem, while improving the sustainability of food production within …

Divergent Serpentoviruses In Free-Ranging Invasive Pythons And Native Colubrids In Southern Florida, United States, Steven B. Tillis, Jillian M. Josimovich, Melissa A. Miller, Laura L. Hoon-Hanks, Arik M. Hartmann, Natalie M. Claunch, Marley E. Iredale, Tracey D. Logan, Amy A. Yackel Adams, Ian A. Bartoszek, John S. Humphrey, Bryan M. Kluever, Mark D. Stenglein, Robert N. Reed, Christina M. Romagosa, James F.X. Wellehan, Robert J. Ossiboff

USDA Wildlife Services: Staff Publications

Burmese python (Python bivittatus) is an invasive snake that has significantly affected ecosystems in southern Florida, United States. Aside from direct predation and competition, invasive species can also introduce nonnative pathogens that can adversely affect native species. The subfamily Serpentovirinae (order Nidovirales) is composed of positive-sense RNA viruses primarily found in reptiles. Some serpentoviruses, such as shingleback nidovirus, are associated with mortalities in wild populations, while others, including ball python nidovirus and green tree python nidovirus can be a major cause of disease and mortality in captive animals. To determine if serpentoviruses were present in invasive Burmese …

Seasonal Patterns In Activity And Occupancy Dynamics Of The Imperiled Spotted Turtle (Clemmys Guttata), Ellery Vaughn Lassiter

Graduate Theses and Dissertations

Wetland ecosystems are often spatially patchy across a landscape and exhibit seasonal patterns in water levels, resulting in the need for aquatic wildlife to use several different wetland patches across a season. The ecology of semi-aquatic freshwater turtles is especially complex because individuals often move among a variety of habitats to meet life history needs and these habitat requirements often differ across a season. Understanding the temporal and spatial scale in which turtles move and distribute across the landscape is vital for effective management, especially in the face of continued habitat fragmentation and climate change. Thus, we sought to understand …

Green On The Map - The Influence Of Conservation Easements On The Naturalness Of Landscapes In The United States, Nakisha Fouch

All Dissertations

Large protected areas have long been the cornerstone of conservation biology, however, in an era branded by the human dominance of ecosystems, regional landscape structure and function are often a consequence of accumulated land-use decisions that may or may not include a nod to conservation planning. With underrepresentation of habitats in publicly protected areas, attention has focused on the function of alternative land conservation mechanisms. Private conservation easements (CEs) have proliferated in the United States, yet assessing landscape-level function is confounded by holder and donor intent, national and regional policy, regional landscape contexts, varying extents, resolution, and temporal scale. Over …

Using Landsat Satellite Imagery To Estimate Groundcover In The Grainbelt Of Western Australia, Justin Laycock, Nick Middleton, Karen Holmes

Resource management technical reports

Maintaining vegetative groundcover is an important component of sustainable agricultural systems and plays a critical function for soil and land conservation in Western Australia’s (WA) grainbelt (the south-west cropping region). This report describes how satellite imagery can be used to quantitatively and objectively estimate total vegetative groundcover, both in near real time and historically across large areas. We used the Landsat seasonal fractional groundcover products developed by the Joint Remote Sensing Research Program from the extensive archive of Landsat imagery. These products provide an estimate of the percentage of green vegetation, non-green vegetation and bare soil for each 30 m …

The Impact Of Policy Design On Willingness To Pay For Ecosystem Services From Prairie Strips, Karina Schoengold, Badri Khanal, Taro Mieno, Lisa Schulte Moore

Cornhusker Economics

Ecosystem services from farmland conservation are public good benefits. The value of these benefits is primarily measured using methods that determine the willingness to pay (WTP) for those benefits. Prairie strips, a farmland conservation practice, provide ecosystem services such as improved water quality, soil health, and biodiversity (Schulte et al., 2017). The state of Iowa is a major corn producer and contributes significant amounts of nitrogen and phosphorous to the Gulf of Mexico (Alexander et al., 2008). The development of conventional agricultural systems has also resulted in a significant loss of biodiversity, including a dominant land cover of tallgrass prairie. …

Nexus Between Animal Welfare, Environment, And Sustainable Development: Resource Document, Wellbeing International

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

This Resource Document has been developed to explore the Nexus (links) between Animal Welfare, the Environment, and Sustainable Development. The document includes relevant citations and reports addressing the topics encompassed by the Nexus. It will be maintained as a “living document” (subject to revision) in the WellBeing International Studies Repository. The original document and subsequent revisions will be kept in the Repository to provide a record of the changes.

Natural Resource System Size Can Be Used For Managing Recreational Use, Derek S. Kane, Kevin L. Pope, Keith D. Koupal, Mark A. Pegg, Christopher J. Chizinski, Mark A. Kaemingk

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Outdoor recreation provides societal benefits that are often measured by the amount of use natural resource systems receive. Still, the amount of resource use natural resource systems receive is often unknown or unstudied. Monitoring and quantifying resource use is often logistically difficult and costly but is paramount to optimize societal benefits. Identifying a simple and readily available metric that can indicate the quantity of recreational use of natural resource systems would benefit natural resource management. Using recreational angler participation data during an 11-year study period from 73 public waterbodies in Nebraska, USA, we developed a resource size-use model that demonstrates …

A Novel Vaccine Candidate Against Rabbit Hemorrhagic Disease Virus 2 (Rhdv2) Confers Protection In Domestic Rabbits, Angela M. Bosco-Lauth, Bethany Cominsky, Stephanie Porter, J. Jeffrey Root, Amber Schueler, Gary Anderson, Sara Vanderwal, Andy Benson

USDA Wildlife Services: Staff Publications

OBJECTIVE To evaluate efficacy of a novel vaccine against rabbit hemorrhagic disease virus 2 (RHDV2) in domestic rabbits.

ANIMALS 40 New Zealand White rabbits obtained from a commercial breeder.

PROCEDURES Rabbits were vaccinated and held at the production facility for the duration of the vaccination phase and transferred to Colorado State University for challenge with RHDV2. Rabbits were challenged with oral suspensions containing infectious virus and monitored for clinical disease for up to 10 days. Rabbits that died or were euthanized following infection were necropsied, and livers were evaluated for viral RNA via RT-PCR.

RESULTS None of the vaccinated animals …

A Long-Term Vision For An Ecologically Sound Platte River, Andrew J. Caven, Melissa M. Mosier, Kristal Stoner, Bill Taddicken, Brice Krohn, Ashley Gramza, Craig R. Allen, Mike Carter, Michelle Koch, Kirk D. Schroeder, Sarah Bailey, Rich Walters, Brian C. Chaffin, Erica Gnuse, Amy Jones, Kate Bird

Zea E-Books Collection

The Platte River extends about 310 mi (499 km) from North Platte, Nebraska, to its terminus at the Missouri River confluence near Plattsmouth, Nebraska. The Platte River Valley is a continentally significant ecosystem that serves as a major stopover for migratory waterbirds in the Central Flyway including the endangered Whooping Crane (Grus americana) and >1 million Sandhill Cranes (Antigone canadensis) at the peak of spring migration. However, the Platte River Valley also supports a great diversity of avifauna including grassland breeding birds, native stream fish, vascular plants, herpetofauna, mammals, pollinators, and aquatic macroinvertebrates. Despite ongoing conservation …

A Trichy Situation, Kathryn Purple

Cumberland Mountain Naturalist

This issue of the Cumberland Mountain Naturalist discusses Dr Kathryn Purple's research concerning Trichomonosis carried by pigeons.

2022 Academic Program Review

School of Natural Resources: Documents and Reviews

No abstract provided.

Why Are Some Plant Species Missing From Restorations? A Diagnostic Tool For Temperate Grassland Ecosystems, Marcello De Vitis, Kayri Havens, Rebecca S. Barak, Louise Egerton-Warburton, Adrienne R. Ernst, Matt Evans, Jeremie B. Fant, Alicia J. Foxx, Kyndall Hadley, Jim Jabcon, Joan O’Shaughnessey, Sai Ramakrishna, David Sollenberger, Sophie Taddeo, Rafael Urbina-Casanova, Chris Woolridge, Lan Xu, Jacob Zeldin, Andrea T. Kramer

Natural Resource Management Faculty Publications

The U.N. Decade on Ecosystem Restoration aims to accelerate actions to prevent, halt, and reverse the degradation of ecosystems, and re-establish ecosystem functioning and species diversity. The practice of ecological restoration has made great progress in recent decades, as has recognition of the importance of species diversity to maintaining the long-term stability and functioning of restored ecosystems. Restorations may also focus on specific species to fulfill needed functions, such as supporting dependent wildlife or mitigating extinction risk. Yet even in the most carefully planned and managed restoration, target species may fail to germinate, establish, or persist. To support the successful …

Treatments Of Cyanobacteria On Mariculture Sponges In Jambiani, Tanzania, Sally Thornton-White

Independent Study Project (ISP) Collection

Since 2009, Marine Cultures, an NGO, has explored sponge farming in Jambiani to develop secure and sustainable livelihoods for the community. While sponge farming provides economic opportunity for an industry that functions within ecological boundaries, it faces unique issues that threaten its success. As climate change increases global water temperatures, cyanobacteria are causing increased death rates among mariculture sponges. Mitigating these negative effects with sustainable and reliable solutions can help Marine Cultures grow their positive impact. Alternative methods for mitigating cyanobacteria growth were tested during three study phases. Phase 1 tested how sponge health and algae growth responds to being …

Seasonal Habitat Selection By American White Pelicans, Frederick L. Cunningham, Guiming Wang, D. Tommy King

USDA Wildlife Services: Staff Publications

Resource utilization strategies of avian migrants are a major concern for conservation and management. Understanding seasonal habitat selection by migratory birds helps us explain the ongoing continental declines of migratory bird populations. Our objective was to compare the secondorder and third-order habitat selection by the American White Pelican (Pelecanus erythrorhynchos; hereafter pelican) between the breeding and non-breeding grounds. We tested the Lack hypothesis that habitat selection by migratory birds is stronger on the breeding grounds than on the nonbreeding grounds. We used random-effect Dirichlet-multinomial models to estimate the second-order habitat selection between the seasons with the GPS locations …

Effects Of Early‑Life Experience On Innovation And Problem‑Solving In Captive Coyotes, Andrew C. Garcia, Mitchell A. Parsons, Julie K. Young

USDA Wildlife Services: Staff Publications

Early-life experience often shapes behaviors like innovation and exploration. These behaviors are important to animals encountering novel food resources in diverse habitats, such as mesocarnivores in urban areas. To understand if early-life experiences impact later-life behavior, we examined how coyotes (Canis latrans) responded to a multi-access puzzle box at two life stages: pup (~ 7 weeks) and dispersal (~ 10 months). We first exposed pups, still living with their parents and littermates, to a baited puzzle box. At dispersal age, we again tested both these pups and an age-matched control group that was not exposed to the puzzle …

Full Issue, Frank R. Thompson Iii

National Quail Symposium Proceedings

No abstract provided.

The Evolution Of Quail Research: Trends In Themes, Cognitive Extent, And Lexical Diversity, Fidel Hernández

National Quail Symposium Proceedings

Language is an interesting characteristic that is unique to humans. Language represents a method of human communication and is believed to reflect a person’s view of reality (Kramsch 2004). The words used by a person or a community provide insight into the ideas, concepts, and worldview held by people (Pennebaker et al. 2003). In science, publications represent a primary form of communication of ideas among scientists. Publications provide a historical record of a discipline and reflect the relative interest of a scientific community in particular concepts during a given era (Kim et al. 2018). Consequently, how word use in publications …

Effects Of Climate Change On Northern Bobwhite Nesting Chronology And Clutch Size, Justin A. Rectenwald, D. Clay Sisson, James A. Martin

National Quail Symposium Proceedings

Widespread changes to breeding bird phenology in response to climate change have been apparent in North America for several decades. While the impact of an earlier breeding season may be minimal by itself, changes in community-level interactions can be greatly influenced because of varying responses to climate change in different trophic levels. Climate change has been shown to alter the onset of breeding season and chick survival, and lead to population declines for game birds in high latitudes, at high elevations, and on the periphery of their range. The topic of climate change in relation to northern bobwhite (Colinus …

Examining A Habitat-Weather Threshold For Northern Bobwhite Populations In The Southwestern United States, John T. Edwards, Fidel Hernández, Andrea Montalvo, Masahiro Ohnishi

National Quail Symposium Proceedings

In semiarid portions of the northern bobwhite (Colinus virginianus; hereafter, bobwhite) geographic distribution, weather is a strong driver of interannual abundance. However, the strength of this relationship may depend on habitat amount. Given this habitat–weather dependence, there is likely to be a threshold value for habitat that determines how strongly a bobwhite population responds to weather. Our objective was to evaluate the relationship between habitat amount and the relative influence of weather on bobwhite abundance in Texas and Oklahoma, USA and determine a potential land-cover threshold value. We collected bobwhite abundance and land-cover data from the Breeding Bird …

Climate Impacts On North American Quail, Shelby M. Perry, Erin Moser, Jeffrey G. Whitt, Kelly S. Reyna

National Quail Symposium Proceedings

North America’s quail population trends are often linked to regional climate. Extreme climate events such as severe drought, hard freezes, or excessive winter precipitation can reduce quail populations by as much as 84%. Above-average spring and summer temperatures coincident with drought can reduce the laying season for quail by ≤60 days. Exposure of quail eggs to high temperatures during preincubation can initiate and alter embryonic development. Here, we review the impacts of extreme climate events and a changing climate on the survival, reproduction, and population trends of 6 North American quail species: California quail (Callipepla californica), Gambel’s quail …

Northern Bobwhite Response To Control Of Red Imported Fire Ants In The Gulf Coast Prairie Of Texas, Kelly M. Redmond, Eric D. Grahmann, Fidel Hernández, Leonard A. Brennan, Michael E. Morrow, Timothy Anderson

National Quail Symposium Proceedings

The population decline of northern bobwhite (Colinus virginianus; hereafter, bobwhite) on the Texas Gulf Coast Prairie, USA is largely attributed to habitat loss. However, red imported fire ants (Solenopsis invicta) occur throughout the region and are considered a possible contributing factor to the bobwhite decline. The objectives of our study were to determine the influence of red imported fire ants on bobwhites by comparing bobwhite nest success, survival, and density between sites treated with fire ant bait (treatment) and reference (control) sites. Our study was conducted on 3 private ranches in Goliad and Refugio counties, Texas. …