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Articles 1 - 18 of 18
Full-Text Articles in Life Sciences
On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey
On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey
CCPO Publications
The population of beluga whales in Cook Inlet, Alaska, is in decline, and since 2000 these whales have been under consideration for designation as "endangered" under the Endangered Species Act (and were placed on the list in October 2008, just before this article went to press). In order to study environmental and hydrodynamic impacts on the belugas' movements and survival in the unique habitat of the inlet, a three-dimensional ocean circulation and inundation model is combined with satellite-tracked beluga whale data. Model-wale data comparisons from two whale paths during a five-day period (september 17-21, 2000) covering 10 tidal cycles suggest …
Dinoflagellate Cysts Within Sediment Collections From The Southern Chesapeake Bay, And Tidal Regions Of The James, York, And Rappahannock Rivers, Virginia, David W. Seaborn, Harold G. Marshall
Dinoflagellate Cysts Within Sediment Collections From The Southern Chesapeake Bay, And Tidal Regions Of The James, York, And Rappahannock Rivers, Virginia, David W. Seaborn, Harold G. Marshall
Virginia Journal of Science
The upper 2 cm of sediment core samples from 70 stations in the tidal waters of three Virginia rivers and at 23 stations in the lower Chesapeake Bay were sampled for dinoflagellate cysts. The river sediment cysts were dominated by three common bloom producing species (Heterocapsa triquetra, Scrippsiella trochoidea, and Cochlodinium polykrikoides), whereas these were in low concentration on the Chesapeake Bay sediments which contained mainly dinoflagellate cysts of neritic and oceanic taxa. The mean sediment concentrations from stations in the James, York, and Rappahannock rivers were respectively 1174.8, 536.2, and 323.6 cysts g-1. The mean …
A Phylogeny Of The Snappers (Lutjanidae; Percoidei) Inferred From Cytochrome B Sequence Data, Matthew R. Semcheski
A Phylogeny Of The Snappers (Lutjanidae; Percoidei) Inferred From Cytochrome B Sequence Data, Matthew R. Semcheski
Biological Sciences Theses & Dissertations
The Lutjanidae are economically and ecologically important fishes commonly known as snappers. A morphological study of Lutjanidae concluded that it contained four subfamilies and that together with the family Caesionidae, form the superfamily Lutjanoidea. Although this view was supported elsewhere in the literature, it was later contradicted, treating the caesionids as members of the Lutjanidae. In order to infer a phylogeny of genera within Lutjanidae, the complete cytochrome b gene (1140bp) of 21 lutjanid taxa was sequenced and analyzed along with 19 lutjanid, caesionid, and outgroup sequences obtained from GenBank. Data were analyzed for base composition stationarity and saturation. Phylogenetic …
Transmission Of Panulirus Argus Virus 1 (Pav1) And Its Effect On The Survival Of Juvenile Caribbean Spiny Lobster, Mark J. Butler Iv, Donald C. Behringer Jr., Jeffrey D. Shields
Transmission Of Panulirus Argus Virus 1 (Pav1) And Its Effect On The Survival Of Juvenile Caribbean Spiny Lobster, Mark J. Butler Iv, Donald C. Behringer Jr., Jeffrey D. Shields
Biological Sciences Faculty Publications
The Caribbean spiny lobster Panulirus argus, an important fisheries species, is host to Panulirus argus virus 1 (PaV1), a lethal, unclassified virus-the first found in any species of lobster-prevalent in juvenile lobsters. We describe a series of laboratory experiments aimed at assessing the likely modes of disease transmission, determining the survival of lobsters relative to each transmission pathway and identifying potential alternate hosts. Given evidence for lower prevalence of PaV1 in large lobsters, the effect of lobster size on susceptibility was also examined. Results demonstrated that PaV1 can be transmitted to juvenile lobsters via inoculation, ingestion of diseased tissue, contact …
New Records, Biogeography, And Habitat Protection Needs Of Four Species Of Potamon (Decapoda: Brachyura) In Greece, Eugene G. Maurakis, David V. Grimes
New Records, Biogeography, And Habitat Protection Needs Of Four Species Of Potamon (Decapoda: Brachyura) In Greece, Eugene G. Maurakis, David V. Grimes
Virginia Journal of Science
Objectives are to determine the occurrence of species of Potamon in eastern Crete and the Aegean Islands (Chios, Naxos, Paros, Mykonos, Tinos and Andros); generate phylogenetic relationships among species to propose a biogeographic hypothesis relative to current distributions of the four species of the freshwater crab genus, Potamon, in Greece; and comment on the need to protect habitat suitable for the survival of species of Potamon in the country. Our collections, made in areas not previously sampled by researchers, indicate the presence of Potamon fluviatile on Tinos, N axos, and Andros, and Potamon potamios from central to eastern Crete; …
Influences Of The Loggerhead Sponge (Spheciospongia Vesparium) And The Vase Sponge (Ircinia Campana) On Nearshore Hard-Bottom Community Development In The Florida Keys, Scott Donahue
Biological Sciences Theses & Dissertations
Sponges, octocorals, and stony corals are the dominant sessile fauna within shallow, hard-bottom communities in the Florida Keys, FL (USA). The sponge component of these communities is not well studied and has been cyclically decimated from as early as 1844, most recently in south-central Florida Bay in 1991 and 1992, in apparent association with phytoplankton blooms. The purpose of this research was to examine ways in which sponges may contribute to the maintenance of hard-bottom communities. Specifically, I investigated: 1) the effect of sponges and physical structures on local sea floor scouring and thus the potential for maintenance of hard-bottom; …
Spatial And Trophic Dynamics Of A Macrofaunal Community On A High Energy Intertidal Sandflat, Sharon Ann Tatem
Spatial And Trophic Dynamics Of A Macrofaunal Community On A High Energy Intertidal Sandflat, Sharon Ann Tatem
Biological Sciences Theses & Dissertations
Spatial and trophic interactions between macrofaunal species were studied in a high energy intertidal system during spring-summer low tides. Bioturbation by the enteropneust hemichordate, Balanoglossus aurantiacus (Girad), as evidenced by large fecal mounds, was a conspicuous feature on the sandflat Sediment characteristics were compared between ambient (non-fecal) and B. aurantiacus fecal mound types (fresh-oxidized, fresh-reduced, aged-oxidized, and aged-reduced). Fecal material was differentiated by age based on the presence or absence of mucus and the time of fecal deposition. The color of fecal material was used to assign oxidative state. Multiple isotopes (carbon, nitrogen, sulfur) were used to determine the origins …
A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer
A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer
CCPO Publications
We used a stochastic Lagrangian model to study how behaviour contributes to copepod grazing success. The model simulates distinct foraging behaviours of Clausocalanus furcatus, Paracalanus aculeatus, and Oithona plumifera. Three sets of simulations were performed to investigate the effects of (a) prey-size preference; (b) variation in prey-size spectra; and (c) turbulence intensity on these species’ grazing rates. The size preference simulations demonstrate that, compared with copepodites, mature females have cell ingestion rates that are an order of magnitude lower, while carbon uptake is reduced by 35%. A prey spectrum that is skewed towards cells ,<6 >μm promotes copepodite …
The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju
The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju
OES Faculty Publications
The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …
Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett
Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett
OES Faculty Publications
We used the radiated shanny Ulvaria subbifurcataas a model species to explore the relative gut fullness from hatch to metamorphosis of wild larvae, and compared these values with those of laboratory-reared larvae fed at maximum rates. Ingestion rates of most wild larvae were above starvation levels but below the maximum feeding levels of laboratory-reared larvae. Twenty-six percent of freshly-hatched wild larvae and 11% of large, pre-settlement wild larvae had insufficient food in their stomach to satisfy metabolic requirements. These results, taken on their own, are consistent with the much hypothesized increased foraging performance and survival of larger larvae relative …
Swimming Dynamics And Propulsive Efficiency Of Squids Throughout Ontogeny, Ian K. Bartol, Paul S. Krueger, Joseph T. Thompson, William J. Stewart
Swimming Dynamics And Propulsive Efficiency Of Squids Throughout Ontogeny, Ian K. Bartol, Paul S. Krueger, Joseph T. Thompson, William J. Stewart
Biological Sciences Faculty Publications
Synopsis Squids encounter vastly different flow regimes throughout ontogeny as they undergo critical morphological changes to their two locomotive systems: the fins and jet. Squid hatchlings (paralarvae) operate at low and intermediate Reynolds numbers (Re) and typically have rounded bodies, small fins, and relatively large funnel apertures whereas juveniles and adults operate at higher Re and generally have more streamlined bodies, larger fins, and relatively small funnel apertures. These morphological changes and varying flow conditions affect swimming performance in squids. To determine how swimming dynamics and propulsive efficiency change throughout ontogeny, digital particle image velocimetry (DPIV) and kinematic …
Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio
Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio
OES Faculty Publications
The Southern Ocean exerts a strong impact on marine biogeochemical cycles and global air-sea CO2 fluxes. Over the coming century, large increases in surface ocean CO2 levels, combined with increased upper water column temps. and stratification, are expected to diminish Southern Ocean CO2 uptake. These effects could be significantly modulated by concomitant CO2-dependent changes in the region's biol. carbon pump. Here we show that CO2 concentrations affect the physiology, growth and species composition. of phytoplankton assemblages in the Ross Sea, Antarctica. Field results from in situ sampling and ship-board incubation experiments demonstrate that inorganic …
Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs
Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs
OES Faculty Publications
As the international shipping fleet travels the oceans, it carries with it hidden cargoes of microbes. Fred C. Dobbs explores the hazards posed and what can be done to counteract them.
Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper
Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper
Chemistry & Biochemistry Faculty Publications
A new approach for parameterizing dissolved organic matter ( DOM) ultraviolet-visible absorption spectra is presented. Two distinct spectral slope regions ( 275-295 nm and 350-400 nm) within log-transformed absorption spectra were used to compare DOM from contrasting water types, ranging from wetlands (Great Dismal Swamp and Suwannee River) to photobleached oceanic water ( Atlantic Ocean). On the basis of DOM size-fractionation studies ( ultrafiltration and gel filtration chromatography), the slope of the 275-295- nm region and the ratio of these slopes (SR; 275-295- nm slope : 350-400- nm slope) were related to DOM molecular weight ( MW) and …
Evidence Of Self-Correcting Spiral Flows In Swimming Boxfishes, I. K. Bartol, M. S. Gordon, P. Webb, D. Weihs, M. Gharib
Evidence Of Self-Correcting Spiral Flows In Swimming Boxfishes, I. K. Bartol, M. S. Gordon, P. Webb, D. Weihs, M. Gharib
Biological Sciences Faculty Publications
The marine boxfishes have rigid keeled exteriors (carapaces) unlike most fishes, yet exhibit high stability, high maneuverability and relatively low drag given their large cross-sectional area. These characteristics lend themselves well to bioinspired design. Based on previous stereolithographic boxfish model experiments, it was determined that vortical flows develop around the carapace keels, producing self-correcting forces that facilitate swimming in smooth trajectories. To determine if similar self-correcting flows occur in live, actively swimming boxfishes, two species of boxfishes (Ostracion meleagris and Lactophrys triqueter) were induced to swim against currents in a water tunnel, while flows around the fishes were quantified …
Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins
Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins
OES Faculty Publications
We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO2 levels. Rates of N2 and CO2 fixation and growth increased in step with increasing partial pressure of CO2 (pCO2), but only under Fe- replete conditions. N2) and carbon fixation rates at 75 Pa CO2 were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO2 …
Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu
Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu
OES Faculty Publications
In this study we estimate sediment carbonate dissolution rates for sandy sea grass sediments on the Bahamas Bank using an inverse pore-water advection/diffusion/reaction model constrained by field observations. This model accounts for sea grass O2 input to these sediments, and also parameterizes pore-water advection through these permeable sediments as a nonlocal exchange process. The resulting rates of carbonate dissolution are positively correlated with sea grass density, and are comparable with previous rate estimates for Florida Bay sediments. In contrast, the advective uptake of O2 by these sediments decreased with increasing sea grass density. This suggests that the competing …
Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams
Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams
CCPO Publications
Large-scale transport of seawater in ocean currents may generate spatially complex population structure through the advection of life stages of marine fish species. To test this, we compared the chemistry of otolith nuclei from Patagonian toothfish (Dissostichus eleginoides), presently managed as spatially discrete Populations corresponding to fishing management areas along the Antarctic Circumpolar Current (ACC), which transports water eastward around the Southern Ocean. The chemistry of otolith nuclei, laid down during early life, differed significantly between fishing areas Off South America and the Antarctic and between some Antarctic areas. However, we found significant discrepancies from expectation for a …