Life Sciences Commons^™

Biophysical Interactions Control The Progression Of Harmful Algal Blooms In Chesapeake Bay: A Novel Lagrangian Particle Tracking Model With Mixotrophic Growth And Vertical Migration, Jilian Xiong, Jian Shen, Qubin Qin, Michelle C. Tomlinson, Yinglong J. Zhang, Xun Cai, Fei Yi, Linlin Cui, Margaret R. Mulholland

OES Faculty Publications

Climate change and nutrient pollution contribute to the expanding global footprint of harmful algal blooms. To better predict their spatial distributions and disentangle biophysical controls, a novel Lagrangian particle tracking and biological (LPT-Bio) model was developed with a high-resolution numerical model and remote sensing. The LPT-Bio model integrates the advantages of Lagrangian and Eulerian approaches by explicitly simulating algal bloom dynamics, algal biomass change, and diel vertical migrations along predicted trajectories. The model successfully captured the intensity and extent of the 2020 Margalefidinium polykrikoides bloom in the lower Chesapeake Bay and resolved fine-scale structures of bloom patchiness, demonstrating a reliable …

Environmentally-Determined Production Frontiers And Lease Utilization In Virginia's Eastern Oyster Aquaculture Industry, Jennifer Beckensteiner, Andrew M. Scheld, Pierre St-Laurent, Marjorie A.M. Friedrichs, David M. Kaplan

VIMS Articles

During the last decade, oyster aquaculture has rebounded in Virginia and has been associated with an increase in subaqueous leased area. Production levels remain historically low, however, and many leases are thought to be underutilized. This study uses a novel approach leveraging high-resolution environmental data to evaluate lease utilization and identify constraints on aquaculture development. Stochastic Frontier Analysis (SFA) and Data Envelopment Analysis (DEA) were used to define environmentally-determined production frontiers, i.e. production possibilities based on empirical observations of aquaculture production, available space, and environmental conditions. Both methods estimated Lease Capacity Utilization (LCU, from 0 to 1) for leases producing …

Large Projected Population Loss Of A Salt Marsh Bivalve (Geukensia Demissa) From Sea Level Rise, Robert Isdell, Donna M. Bilkovic, Carlton Hershner

VIMS Articles

Salt marshes and their inhabitants are being displaced by climate change and human development along the coastline. One inhabitant, the ribbed mussel (Geukensia demissa), forms a mutualistic relationship with smooth cordgrass, Sporobolus alterniflorus, along the US Atlantic Coast. Ribbed mussels stabilize the marsh, remove particulate matter from the water column, and promote denitrification, thereby improving local water quality. To quantify the potential effects of SLR on ribbed mussel abundance and resulting impacts on water quality functions, we compared the current and projected future (2050) spatial distributions of ribbed mussels in Chesapeake Bay assuming an intermediate SLR for …

Sensitivity Of A Shark Nursery Habitat To A Changing Climate, Daniel Crear, Robert Latour, Marjorie A.M. Friedrichs, Pierre St-Laurent, Kevin C. Weng

VIMS Articles

Nursery area habitats such as estuaries are vital for the success of many fish populations. Climate change is altering conditions in these areas, which can thus impact the availability of suitable nursery habitat. The sandbar shark Carcharhinus plumbeus uses Chesapeake Bay (USA) as a nursery habitat during the summer months from birth up to 10 yr of age. To assess the impacts of climate change on juvenile sandbar sharks, we developed a habitat model using longline data collected from a fishery-independent survey within Chesapeake Bay. With this model, we projected contemporary and future distributions of suitable habitat for juvenile sandbar …

Restoration Of Seagrass Habitat Leads To Rapid Recovery Of Coastal Ecosystem Services, Robert J. Orth, Jonathan S. Lefcheck, Karen S. Mcglathery, Lillian Aoki, Mark Luckenbach, Kenneth A. Moore, Matthew P.J. Oreska, Richard A. Snyder, David J. Wilcox, Bo Lusk

VIMS Articles

There have been increasing attempts to reverse habitat degradation through active restoration, but few largescale successes are reported to guide these efforts. Here, we report outcomes from a unique and very successful seagrass restoration project: Since 1999, over 70 million seeds of a marine angiosperm, eelgrass (Zostera marina), have been broadcast into mid-western Atlantic coastal lagoons, leading to recovery of 3612 ha of seagrass. Well-developed meadows now foster productive and diverse animal communities, sequester substantial stocks of carbon and nitrogen, and have prompted a parallel restoration for bay scallops (Argopecten irradians). Restored ecosystem services are approaching historic levels, but we …

Dichotomous Keys: An Essential Tool For Fish Detectives, Jackson Martinez

Reports

Grades: 6-8 Subjects: Life Science | Biology

How do scientists identify an unknown fish?

In this activity, students will utilize a dichotomous key to identify unknown fishes from the Chesapeake Bay and will then characterize their trophic levels based on feeding preferences and adaptations. Students will gain an understanding of organism classification, trophic level interactions, and how fishes may play different trophic roles throughout their lives.

A Data Repository For Minimal Effects Of Oyster Aquaculture On Water Quality: Examples From Southern Chesapeake Bay, Jessica Turner, Grace M. Massey, M. Lisa Kellogg, Carl Friedrichs

Data

The objective of this study was to quantify the effects of oyster aquaculture on water quality, sediment quality, and hydrodynamics at select sites in southern Chesapeake Bay. To this end, information was gathered over the course of approximately one year from February 2017 to October 2017 at four operating commercial farms. Farms were sampled during spring, summer, and fall seasons during times of oyster filtration activity when temperatures were greater than 10^oC. Aquaculture sites differed in environmental setting, in terms of their exposure to waves and resulting sediment characteristics. Sites had mesohaline salinities (ranging from 15-22 psu) and …

Role Of Habitat And Predators In Maintaining Functional Diversity Of Estuarine Bivalves, Cassandra N. Glaspie, Rochell D. Seitz

VIMS Articles

Habitat loss is occurring rapidly in coastal systems worldwide. In Chesapeake Bay, USA, most historical oyster reefs have been decimated, and seagrass loss is expected to worsen due to climate warming and nutrient pollution. This loss of habitat may result in declining diversity, but whether diversity loss will equate to loss in ecosystem function is unknown. A bivalve survey was conducted in a variety of habitat types (seagrass, oyster shell, shell hash, coarse sand, detrital mud) in 3 lower Chesapeake Bay sub-estuaries from spring 2012 through summer 2013 to examine the correlation between bivalve densities, habitat type, habitat volume (of …

Tracking Decadal Changes In Striped Bass Recruitment: A Calibration Study Of Seine Surveys In Chesapeake Bay, Mary C. Fabrizio, Troy D. Tuckey, Olivia M. Philips, Brian K. Gallagher

Reports

In this study we estimated calibration factors necessary to maintain the long‐term integrity of the juvenile striped bass surveys in the Chesapeake Bay region. These surveys provide annual indices of recruitment (estimated as juvenile fish abundance in summer) and are used by fisheries managers in Virginia and Maryland to inform adjustments of annual harvest limits for striped bass from the commercial and recreational fisheries in Chesapeake Bay. During the multi‐decadal history of the survey, a potentially influential change occurred: VIMS deployed a net (the VA net) with a mesh material that differed from the standard net that MD DNR continued …

Beyond Zar: The Use And Abuse Of Classification Statistics For Otolith Chemistry, C. M. Jones, M. Palmers, J. J. Schaffler

OES Faculty Publications

Classification method performance was evaluated using otolith chemistry of juvenile Atlantic menhaden Brevoortia tyrannus when assumptions of data normality were met and were violated. Four methods were tested [linear discriminant function analysis (LDFA), quadratic discriminant function analysis (QDFA), random forest (RF) and artificial neural networks (ANN)] using computer simulation to determine their performance when variable-group means ranged from small to large and their performance under conditions of typical skewness to double the amount of skewness typically observed. Using the kappa index, the parametric methods performed best after applying appropriate data transformation, gaining 2% better performance with LDFA performing slightly better …

Chesapeake Aquaculture, Garth Woodruff

Faculty Publications

No abstract provided.

Biodiversity And You., Garth Woodruff

Faculty Publications

No abstract provided.

The Dilemma Of Derelict Gear: Datasets, Andrew M. Scheld, Donna M. Bilkovic, Kirk J. Havens

Data

No abstract provided.

Emergence Of Algal Blooms: The Effects Of Short-Term Variability In Water Quality On Phytoplankton Abundance, Diversity, And Community Composition In A Tidal Estuary, Todd A. Egerton, Ryan E. Morse, Harold G. Marshall, Margaret R. Mulholland

OES Faculty Publications

Algal blooms are dynamic phenomena, often attributed to environmental parameters that vary on short timescales (e.g., hours to days). Phytoplankton monitoring programs are largely designed to examine long-term trends and interannual variability. In order to better understand and evaluate the relationships between water quality variables and the genesis of algal blooms, daily samples were collected over a 34 day period in the eutrophic Lafayette River, a tidal tributary within Chesapeake Bay's estuarine complex, during spring 2006. During this period two distinct algal blooms occurred; the first was a cryptomonad bloom and this was followed by a bloom of the mixotrophic …

Can We Predict The Future: Juvenile Finfish And Their Seagrass Nurseries In The Chesapeake Bay, Cynthia M. Jones

OES Faculty Publications

The importance of estuarine seagrass beds as nurseries for juvenile fish has become a universal paradigm, especially for estuaries that are as important as the Chesapeake Bay. Yet, scientific tests of this hypothesis were equivocal depending on species, location, and metrics. Moreover, seagrasses themselves are under threat and one-third of seagrasses have disappeared worldwide with 65 of their losses occurring in estuaries. Although there have been extensive studies of seagrasses in the Chesapeake Bay, surprisingly few studies have quantified the relationship between seagrass as nurseries for finfish in the Bay. Of the few studies that have directly evaluated the use …

Seasonal Dynamics Of Mesodinium Rubrum In Chesapeake Bay, Matthew D. Johnson, Doane K. Stoecker, Harold G. Marshall

Biological Sciences Faculty Publications

The photosynthetic ciliate Mesodinium rubrum is a common member of coastal phytoplankton communities that is well adapted to low-light, turbid ecosystems. It supports the growth of, or competes with, harmful dinoflagellate species for cryptophyte prey, as well as being a trophic link to copepods and larval fish. We have compiled data from various sources (n = 1063), on the abundance and distribution of M. rubrum in Chesapeake Bay and its tributaries. Because M. rubrum relies on obtaining organelles from cryptophyte algae to maintain rapid growth, we also enumerated cryptophyte algae in the portion of these samples that we collected …

How Do Shellfisheries Influence Genetic Connectivity In Metapopulations? A Modeling Study Examining The Role Of Lower Size Limits In Oyster Fisheries, Daphne M. Munroe, Eileen E. Hofmann, Eric N. Powell, John M. Klinck

CCPO Publications

Fisheries can potentially alter evolutionary processes such as genetic connectivity and lead to genotypic changes in stocks. Using an individual-based metapopulation genetics model, we examined the possible influence of oyster (Crassostrea virginica) fisheries on genetic connectivity. We simulated a range of realistic fishing pressures, with and without a minimum size limit (limit = 63.5 mm), over a range of fishing scenarios including single-area and stock-wide fisheries. Movement of a neutral marker gene provided an indicator of gene transfer between populations. Simulations showed that fishing may alter genetic connectivity. Increasing fishing pressure tended to decrease potential for fished populations …

Estuarine Suspended Sediment Loads And Sediment Budgets In Tributaries Of Chesapeake Bay Phase 1: York, Patuxent, And Potomac Rivers, Julie Herman, Carl Friedrichs

Reports

Understanding the sources and sinks of suspended sediment in Chesapeake Bay tributaries is an important contribution to quantifying the Bay sediment budget, as well as an aid to management strategies. The purpose of the project was to identify estuarine sediment transport processes and estimate sediment loads and sediment budgets for the major tributaries of the Bay. The first phase included the York River, Va. and the Patuxent River, Md. Sediment transport processes, sediment loads, and a partial budget also were developed for the Potomac River, Md. The results of this study represent the most comprehensive calculations to date of sediment …

Modeling The Vertical Distributions Of Downwelling Plane Irradiance And Diffuse Attenuation Coefficient In Optically Deep Waters, X. J. Pan, Richard C. Zimmerman

OES Faculty Publications

The diffuse attenuation coefficient Kᵈ is critical to understand the vertical distribution of underwater downwelling irradiance (Eᵈ). Theoretically Eᵈ is composed of the direct solar beam and the diffuse sky irradiance. Applying the statistical results from Hydrolight radiative transfer simulations, Kᵈ is expressed into a mathematical equation (named as PZ06) integrated from the contribution of direct solar beam and diffuse sky irradiance with the knowledge of sky and water conditions. The percent root mean square errors (RMSE) for the vertical distribution of Eᵈ(z) under various sky and water conditions between PZ06 and Hydrolight results are typically less than 4%. Field …

Patterns Of Larval Atlantic Croaker Ingress Into Chesapeake Bay, Usa, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

We compared ingress patterns of Atlantic croaker Micropogonias undulatus larvae into Chesapeake Bay, USA, with published ingress patterns through barrier island inlets, the accepted model for larval fish ingress. This model asserts that larvae ingress on night flood tides at the flooddominated side of the inlet and at all depths. At the Chesapeake Bay mouth and in the adjacent coastal waters, we compared the distribution of abundance, size, age, and growth rates of croaker prior to ingress, In contrast to the barrier island inlet model, croaker larvae were more abundant at depth than closer to the surface regardless of location. …

Guidelines: Shallow Water Quality Monitoring Continuous Monitoring Station: Selection, Assembly & Construction, Eduardo J. Miles

Reports

No abstract provided.

Understanding How Disease And Environment Combine To Structure Resistance In Estuarine Bivalve Populations, Eileen E. Hofmann, David Bushek, Susan E. Ford, Ximing Guo, Dale Haidvogel, Dennis Hedgecock, John M. Klinck, Coren Milbury, Diego Narvaez, Eric Powell, Yongping Wang, Zhiren Wang, Liusuo Zhang

CCPO Publications

Delaware Bay oyster (Crassostrea virginica) populations are influenced by two lethal parasites that cause Dermo and MSX diseases. As part of the US National Science Foundation Ecology of Infectious Diseases initiative, a program developed for Delaware Bay focuses on understanding how oyster population genetics and population dynamics interact with the environment and these parasites to structure he host populations, and how these interactions might modified by climate change. Laboratory and field studies undertaken during this program include identifying genes related to MSX and Dermo disease resistance, potential regions for refugia and the mechanisms that allow them to exist, …

Phytoplankton Blooms: Their Occurence And Composition Within Virginia's Tidal Tributaries, Harold G. Marshall, Todd A. Egerton

Biological Sciences Faculty Publications

Sporadic algal bloom development within a 10 year monitoring program in Virginia tidal tributaries of Chesapeake Bay is reviewed. These blooms were common events, characteristically producing a color signature to the surface water, typically short lived, occurring mainly from spring into autumn throughout different salinity regions of these rivers, and were produced primarily by dinoflagellates. The abundance threshold levels that would identify bloom status from a non-bloom presence were species specific, varied with the taxon's cell size, and ranged from ca. 10 to 10(4) cells mL(-1). Among the most consistent sporadic bloom producers were the dinoflagellates Akashiwo sanguinea, Cochlodinium …

Chesapeake Bay National Estuarine Research Reserve In Virginia Management Plan: 2008-2012, W. G. Reay, Sandra Erdle, Scott Lerberg, Sarah Mcguire, Ken Moore

Reports

No abstract provided.

Connecting Science And Management For Virginia's Tidal Wetlands, Center For Coastal Resources Management, Virginia Institute Of Marine Science

Reports

Rivers & Coast is a periodic publication of the Center for Coastal Resources Management, Virginia Institute of Marine Science. The goal of Rivers & Coast is to keep readers well informed of current scientific understanding behind key environmental issues related to watershed rivers and coastal ecosystems of the Chesapeake Bay

Determination Of Hydro-Morphological Effects Of The Rappahannock Shoal Channel On The District Of Columbia Nutrient Allocation Under The Chesapeake Bay Agreement, Harry V. Wang

Reports

No abstract provided.

Integrated Coastal Management Issues And The Choices We Make, Center For Coastal Resources Management, Virginia Institute Of Marine Science

Reports

Rivers & Coast is a periodic publication of the Center for Coastal Resources Management, Virginia Institute of Marine Science. The goal of Rivers & Coast is to keep readers well informed of current scientific understanding behind key environmental issues related to watershed rivers and coastal ecosystems of the Chesapeake Bay.

Substituting Otoliths For Chemical Analyses: Does Sagitta = Lapillus?, Nathan G. Smith, Cynthia M. Jones

OES Faculty Publications

Chemical analysis of fish otoliths has become an important technique in fisheries science with widespread applications. Most research up to this point has focused predominantly on sagittal otoliths, but the underlying assumptions may also apply to lapilli. The goal of this study was to determine whether lapilli and sagittae have the same otolith chemistry and whether one can be substituted for the other for solution-based chemical analysis in wild-captured fish. We compared the stable isotope chemistry (δ13C and δ18O) of paired sagittae and lapilli of juvenile spotted seatrout Cynoscion nebulosus collected from Chesapeake Bay seagrass beds in 2002. …

Living Shorelines, Center For Coastal Resources Management, Virginia Institute Of Marine Science

Reports

Rivers & Coast is a periodic publication of the Center for Coastal Resources Management, Virginia Institute of Marine Science. The goal of Rivers & Coast is to keep readers well informed of current scientific understanding behind key environmental issues related to watershed rivers and coastal ecosystems of the Chesapeake Bay.

Biophysical Mechanisms Of Larval Fish Ingress Into Chesapeake Bay, Jonathan A. Hare, Simon Thorrold, Harvey Walsh, Christian Reiss, Arnoldo Valle-Levinson, Cynthia Jones

OES Faculty Publications

Selective tidal stream transport is hypothesized as a dominant mechanism by which larvae of marine animals move through estuarine openings. For larvae moving from the shelf to estuarine habitats, selective tidal stream transport proposes that larvae are higher in the water column during flood tide and lower in the water column during ebb tide. Although a number of studies conclude that selective tidal stream transport is the mechanism responsible for larval ingress, few studies consider alternative mechanisms or consider passive explanations for tidal patterns in larval distributions. We examined the biophysical mechanisms responsible for larval ingress into Chesapeake Bay using …