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A Data Repository For Minimal Effects Of Oyster Aquaculture On Water Quality: Examples From Southern Chesapeake Bay, Jessica Turner, Grace M. Massey, M. Lisa Kellogg, Carl Friedrichs Oct 2019

A Data Repository For Minimal Effects Of Oyster Aquaculture On Water Quality: Examples From Southern Chesapeake Bay, Jessica Turner, Grace M. Massey, M. Lisa Kellogg, Carl Friedrichs

Data

The objective of this study was to quantify the effects of oyster aquaculture on water quality, sediment quality, and hydrodynamics at select sites in southern Chesapeake Bay. To this end, information was gathered over the course of approximately one year from February 2017 to October 2017 at four operating commercial farms. Farms were sampled during spring, summer, and fall seasons during times of oyster filtration activity when temperatures were greater than 10oC. Aquaculture sites differed in environmental setting, in terms of their exposure to waves and resulting sediment characteristics. Sites had mesohaline salinities (ranging from 15-22 psu) and …


Ctd Data Collected Onboard R/V Weatherbird Ii Cruise Wb-0717 In The Gulf Of Mexico From 2017-07-19 To 2017-07-30, Patrick Schwing Jan 2019

Ctd Data Collected Onboard R/V Weatherbird Ii Cruise Wb-0717 In The Gulf Of Mexico From 2017-07-19 To 2017-07-30, Patrick Schwing

C-IMAGE data

This dataset includes CTD and environmental data for nine stations collected onboard R/V Weatherbird II cruise WB-0717 in the Gulf of Mexico from 2017-07-19 to 2017-07-30. The dataset includes 16 profiles/casts of temperature, salinity, conductivity, chlorophyll-a and colored dissolved organic matter fluorescence, turbidity, oxygen saturation, sound velocity, altimetry and Photosynthetically Available Radiation (PAR). R/V Weatherbird II cruise WB-0717 was led by chief scientist Dr. Steve Murawski. The cruise objectives were to evaluate the extent of fish disease and to characterize the distribution and fate of oiled sediment at sites on the continental shelf and slope of the northern Gulf of …


Habitat Classification Of The Gulf Of Mexico (Gom) Using The Hybrid Coordinate Ocean Model (Hycom) And Salinity/Temperature Profiles, Cruises Dp01-Dp04, May 2015 To August 2016, Matt Johnston, Rosanna Milligan, Cole Easson, Sergio Derada, Brad Penta, Tracey Sutton Jan 2018

Habitat Classification Of The Gulf Of Mexico (Gom) Using The Hybrid Coordinate Ocean Model (Hycom) And Salinity/Temperature Profiles, Cruises Dp01-Dp04, May 2015 To August 2016, Matt Johnston, Rosanna Milligan, Cole Easson, Sergio Derada, Brad Penta, Tracey Sutton

DEEPEND Datasets

Deep pelagic habitat from the entire Gulf of Mexico (GOM) was classified using the deviation of sea surface height (SSH) from mean SSH for the entire GOM and water temperature at 300 m water depth, founded on ocean condition data from the 1/25° GOM HYbrid Coordinate Ocean Model (HYCOM). Pelagic habitats were segregated into anticyclonic, mixed boundaries, and common water units – all of which likely produce varying levels of forage for deep-sea fauna and may be trophic drivers. Model classifications were compared to classifications based on water column temperature and salinity at depth, as measured by CTD casts during …


Justo Sierra Cruise Sample Data, Southern Gulf Of Mexico, 2015, Patrick Schwing Mar 2017

Justo Sierra Cruise Sample Data, Southern Gulf Of Mexico, 2015, Patrick Schwing

C-IMAGE data

This dataset includes CTD data from two cruises aboard the B/O Justo Sierra in 2015. Data are in ACSII and RAW format.


Weatherbird Ii Sediment Cruise Sample Data (2016), Patrick Schwing, Steven Murawski Mar 2017

Weatherbird Ii Sediment Cruise Sample Data (2016), Patrick Schwing, Steven Murawski

C-IMAGE data

This dataset includes the locations and allotments of multicore sediment samples, water sample locations, and CTD data from cruises aboard the R/V Weatherbird II from 2016.


Weatherbird Ii Sediment Cruise Sample Data 2015, Patrick Schwing Feb 2017

Weatherbird Ii Sediment Cruise Sample Data 2015, Patrick Schwing

C-IMAGE data

This dataset includes the locations and allotments of multicore sediment samples, water sample locations, and CTD data from cruises aboard the R/V Weatherbird II from 2015.


Microbiome And Bacterioplankton Rrna Gene Sequence Data Collected From Gulf Of Mexico Seawater Samples, Cruises Dp01 And Dp02 From May 2015 - August 2015, Cole Easson, Jose V. Lopez Feb 2017

Microbiome And Bacterioplankton Rrna Gene Sequence Data Collected From Gulf Of Mexico Seawater Samples, Cruises Dp01 And Dp02 From May 2015 - August 2015, Cole Easson, Jose V. Lopez

DEEPEND Datasets

Seawater was collected and filtered for microbiome and bacterioplankton sequencing and analyses at various depths during two planned DEEPEND cruise expeditions to the GOM. Filters were stored and then processed for total environmental genomic DNA according to standard methods (see earthmicrobiome.org). 16S rRNA amplicon libraries covering the V4 hypervariable region was generated with universal PCR primers and then sequenced on an Illumina MiSeq DNA sequencing platform. Bioinformatics analyses in QIIME and R was used to quality filter and assess microbial community diversity and taxonomic composition. These baseline characterizations track alpha and beta diversity at different depths ranging from 0 – …


Ctd And Other Environmental Data For The Northeastern Gulf Of Mexico And West Florida Shelf: June 2012 – August 2014, Kendra L. Daly Aug 2016

Ctd And Other Environmental Data For The Northeastern Gulf Of Mexico And West Florida Shelf: June 2012 – August 2014, Kendra L. Daly

C-IMAGE data

This dataset contains seasonal and interannual CTD data collected from the northeastern Gulf of Mexico and the west Florida shelf. The contents of the dataset are an assessment of the seasonal and interannual changes in distributions of temperature, salinity, density, oxygen, chlorophyll and CDOM fluorescence, turbidity, and Photosynthetically Active Radiation (PAR) after the Deepwater Horizon oil spill.


Zooplankton Biomass On The West Florida Shelf, July 2010 – August 2014, Kendra L. Daly Aug 2016

Zooplankton Biomass On The West Florida Shelf, July 2010 – August 2014, Kendra L. Daly

C-IMAGE data

Zooplankton have high temporal and spatial variability. Therefore, they need to be assessed before oil impact and regularly thereafter, to interpret what changes are causally related to oil spills. We surveyed plankton using bongo net tows and the USF SIPPER imaging system to evaluate the variation in plankton abundance on the west Florida shelf and the northern Gulf of Mexico. Seasonal CTD, chlorophyll, nutrient, and zooplankton abundance data from the northeastern Gulf of Mexico and the west Florida shelf. Developed new algorithms for data mining SIPPER (Shadow Imaging Particle Profiler and Evaluation Recorder) camera particle imaging data.


Cruise: Yr130619, Stations: S5153- S5168, York River Estuary And Pamunkey River, Virginia, Mudbed Longitudinal Profiler Station Survey Bracketing An Ebb Tide., Kelsey A. Fall, Grace M. Cartwright, Carl T. Friedrichs, David G. Bowers Sep 2014

Cruise: Yr130619, Stations: S5153- S5168, York River Estuary And Pamunkey River, Virginia, Mudbed Longitudinal Profiler Station Survey Bracketing An Ebb Tide., Kelsey A. Fall, Grace M. Cartwright, Carl T. Friedrichs, David G. Bowers

Data

Dataset consists of profile and water column burst Data collected as part of a longitudinal profiler station survey at approximately 20 km, 25 km, 35 km, 45 km, 56 km and 62 km upriver from the mouth of the York River Estuary.


Cruise: Yr130612, Stations: S5127- S5138, York River Estuary And Pamunkey River, Virginia, Mudbed Longitudinal Profiler Station Survey Bracketing A Flood Tide., Kelsey A. Fall, Grace M. Cartwright, Carl T. Friedrichs, David G. Bowers Sep 2014

Cruise: Yr130612, Stations: S5127- S5138, York River Estuary And Pamunkey River, Virginia, Mudbed Longitudinal Profiler Station Survey Bracketing A Flood Tide., Kelsey A. Fall, Grace M. Cartwright, Carl T. Friedrichs, David G. Bowers

Data

Dataset consists of profile and water column burst Data collected as part of a longitudinal profiler station survey at approximately 20 km, 25 km, 35 km, 45 km, 56 km and 62 km upriver from the mouth of the York River Estuary.


Cruise: Yr130618, Stations: S5139- S5152, York River Estuary And Pamunkey River, Virginia, Mudbed Longitudinal Profiler Station Survey Bracketing An Ebb Tide., Kelsey A. Fall, Grace M. Cartwright, Carl T. Friedrichs, David G. Bowers Sep 2014

Cruise: Yr130618, Stations: S5139- S5152, York River Estuary And Pamunkey River, Virginia, Mudbed Longitudinal Profiler Station Survey Bracketing An Ebb Tide., Kelsey A. Fall, Grace M. Cartwright, Carl T. Friedrichs, David G. Bowers

Data

Dataset consists of profile and water column burst Data collected as part of a longitudinal profiler station survey at approximately 20 km, 25 km, 35 km, 45 km, 56 km and 62 km upriver from the mouth of the York River Estuary.


Cruise: Yr080507, Stations: S4526- S4540, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080507, Stations: S4526- S4540, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080416, Stations: S4489- S4497, Gloucester Point, York River Virginia 5-Hour Mudbed Calibration Survey Bracketing An Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080416, Stations: S4489- S4497, Gloucester Point, York River Virginia 5-Hour Mudbed Calibration Survey Bracketing An Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 5-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080415, Stations: S4461- S4488, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing An Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080415, Stations: S4461- S4488, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing An Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080418, Stations: S4498- S4514, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080418, Stations: S4498- S4514, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080505, Stations: S4515- S4525, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080505, Stations: S4515- S4525, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080515, Stations: S4565- S4591, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080515, Stations: S4565- S4591, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080606, Stations: S4602- S4620, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080606, Stations: S4602- S4620, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080609, Stations: S4621- S4635, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080609, Stations: S4621- S4635, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080603, Stations: S4582- S4601, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080603, Stations: S4582- S4601, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst data and bottom burst data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080514, Stations: S4541- S4564, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080514, Stations: S4541- S4564, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey From A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080731, Stations: S4677- S4700, Gloucester Point, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080731, Stations: S4677- S4700, Gloucester Point, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr081016, Stations: S4701- S4729, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr081016, Stations: S4701- S4729, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080610, Stations: S4636- S4650, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey Bracketing A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080610, Stations: S4636- S4650, Clay Bank, York River Virginia 3-Hour Mudbed Calibration Survey Bracketing A Slack To Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 3-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr080729, Stations: S4651- S4776, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr080729, Stations: S4651- S4776, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr090108, Stations: S4730- S4757, Gloucester Point, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr090108, Stations: S4730- S4757, Gloucester Point, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Ebb Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr090226, Stations: S4758- S4781, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr090226, Stations: S4758- S4781, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.


Cruise: Yr090514, Stations: S4802- S4819, Clay Bank, York River Virginia ~4-Hour Mudbed Calibration Survey From Max Ebb To Max Flood, Grace M. Cartwright, Carl T. Friedrichs Aug 2014

Cruise: Yr090514, Stations: S4802- S4819, Clay Bank, York River Virginia ~4-Hour Mudbed Calibration Survey From Max Ebb To Max Flood, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a ~4-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location


Cruise: Yr110901, Stations: S4976- S4995, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Flood Tide, Grace M. Cartwright, Carl T. Friedrichs Jul 2014

Cruise: Yr110901, Stations: S4976- S4995, Clay Bank, York River Virginia 6-Hour Mudbed Calibration Survey Bracketing A Flood Tide, Grace M. Cartwright, Carl T. Friedrichs

Data

Dataset consists of profile and water column burst Data and bottom burst Data collected as part of a 6-hour anchor station survey in support of an Acoustic Doppler Velocimeter (ADV) tripod deployed in nearby location.