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Genetics and Genomics

Biology Faculty Publications and Presentations

Series

2018

Non-coding RNA

Articles 1 - 2 of 2

Full-Text Articles in Life Sciences

Small Non-Coding Rna Expression And Vertebrate Anoxia Tolerance, Claire L. Riggs, Amanda Summers, Daniel E. Warren, Göran E. Nilsson, Sjannie Lefevre, W. W. Dowd, Sarah Milton, Jason E. Podrabsky Jul 2018

Small Non-Coding Rna Expression And Vertebrate Anoxia Tolerance, Claire L. Riggs, Amanda Summers, Daniel E. Warren, Göran E. Nilsson, Sjannie Lefevre, W. W. Dowd, Sarah Milton, Jason E. Podrabsky

Biology Faculty Publications and Presentations

Background: Extreme anoxia tolerance requires a metabolic depression whose modulation could involve small non-coding RNAs (small ncRNAs), which are specific, rapid, and reversible regulators of gene expression. A previous study of small ncRNA expression in embryos of the annual killifish Austrofundulus limnaeus, the most anoxiatolerant vertebrate known, revealed a specific expression pattern of small ncRNAs that could play important roles in anoxia tolerance. Here, we conduct a comparative study on the presence and expression of small ncRNAs in the most anoxia-tolerant representatives of several major vertebrate lineages, to investigate the evolution of and mechanisms supporting extreme anoxia tolerance. The epaulette …


Identification Of Novel Mites (Miniature Inverted-Repeat Transposable Elements) In Coxiella Burnetii: Implications For Protein And Small Rna Evolution, Shaun Wachter, Rahul Raghavan, Jenny Wachter, Michael F. Minnick Jan 2018

Identification Of Novel Mites (Miniature Inverted-Repeat Transposable Elements) In Coxiella Burnetii: Implications For Protein And Small Rna Evolution, Shaun Wachter, Rahul Raghavan, Jenny Wachter, Michael F. Minnick

Biology Faculty Publications and Presentations

Background: Coxiella burnetii is a Gram-negative gammaproteobacterium and zoonotic agent of Q fever. C. burnetii’s genome contains an abundance of pseudogenes and numerous selfish genetic elements. MITEs (miniature invertedrepeat transposable elements) are non-autonomous transposons that occur in all domains of life and are thought to be insertion sequences (ISs) that have lost their transposase function. Like most transposable elements (TEs), MITEs are thought to play an active role in evolution by altering gene function and expression through insertion and deletion activities. However, information regarding bacterial MITEs is limited. Results: We describe two MITE families discovered during research on small non-coding …