Life Sciences Commons^™

Restoration Is Repairing Relationships: Bridging Indigenous And Western Sciences To Assess The Socio-Ecological Restoration Of Wild Rice (Zizania Palustris) On Keweenaw Bay Indian Community Homelands, Cassandra M. Reed-Vandam

Dissertations, Master's Theses and Master's Reports

Manoomin (wild rice, Zizania palustris) is an ecologically and culturally significant plant relative for the Keweenaw Bay Indian Community (KBIC). Historically, manoomin was present across much of the Great Lakes, however, their presence has declined since the early 1900s and, by 1990, virtually disappeared within KBIC homelands. Employing ethnography, surveys, focus groups, and conversations with Ojibwa knowledge holders, this research defined successful manoomin restoration for KBIC and developed socio-ecological attributes and indicators to assess restoration presented in the Medicine Wheel Framework for Manoomin Restoration. Surface water, sediment, and pore water samples at six different manoomin sites were analyzed to …

Under Ice Photosynthetic Primary Production And Dark Carbon Fixation In A Temperate Freshwater System, Vanessa Cubillos Tellez

Dissertations, Master's Theses and Master's Reports

Ice-covered lakes are vulnerable to environmental change, especially those in the Northern Hemisphere where ice cover is rapidly declining due to global warming. These changes can alter metabolic processes and disrupt carbon cycling driven by primary producers who form the base of the food chain and are key to sustaining ecosystem function. Photosynthetic primary production and dark carbon fixation under the ice in the Keweenaw Waterway, a temperate freshwater system that is ice-covered for ~3 months out of the year, were studied using a carbon isotopic labeling (14C-bicarbonate) technique. Water samples were collected weekly during ice cover and monthly during …

Tropical Plant Physiological Responses To Experimental Warming And Hurricane Disturbance, Robert Tunison

Dissertations, Master's Theses and Master's Reports

Tropical forests exchange more carbon with the atmosphere than any other biome, but their responses to climate change are largely understudied. The work presented in this dissertation uses a tropical understory warming experiment that was hit by a hurricane disturbance to investigate how plant physiology responds to multiple types of climate change pressures. We measured the potential for root respiration, leaf photosynthesis & respiration, and leaf thermotolerance acclimation to experimental warming while recovering from hurricane disturbance. We found there was thermal acclimation via decreased ecosystem root respiration, increased photosynthetic thermal niche breadth, and decreased quantum efficiency for some species at …

White-Tailed Deer In A Winter-Wonderland: Long-Term Deer Yard Use And Methodological Considerations For Ungulate Fecal Dna Metabarcoding, Melanie A. Ottino

Dissertations, Master's Theses and Master's Reports

Northern white-tailed deer (Odocoileus virginianus) mitigate the increased energetic costs of severe winter conditions through obligate migration to densely congregated areas with abundant conifer cover, a behavior referred to as yarding. “Deer yards” in the Western Upper Peninsula (UP) of Michigan are principally located within the reduced snowpack and increased ambient temperature microclimates of densely canopied eastern hemlock (Tsuga canadensis) stands, but specific drivers of long-term site fidelity and utilization are largely uncharacterized. As an important game species of high economic and cultural value and a keystone herbivore with critical impact of plant community composition and structure, identifying winter yarding …

Characterization Of Vernal Pools Across National Parks In The Great Lakes Region, Samantha R. Kurkowski

Dissertations, Master's Theses and Master's Reports

Vernal pools are small, ephemeral wetlands that become inundated each spring and provide many ecosystem services to the surrounding upland forests. They also provide critical habitat for amphibians and invertebrates, as their temporary nature keeps them free of fish and reduces predator populations. As part of a mapping project, we collected baseline field data on vernal pool characteristics throughout five Great Lakes National Parks: Pictured Rocks National Lakeshore, Sleeping Bear Dunes National Lakeshore, Apostle Islands National Lakeshore, Isle Royale National Park, and Voyagers National Parks. Our goals were to characterize and assess how vernal pools vary within and across the …

Eutrophication On Twin Lakes: Applying A Phosphorus Budget And Shoreline Surveys To Assess Current & Historical Lake Health, Tyler K. Lemahieu

Dissertations, Master's Theses and Master's Reports

The Twin Lakes system, a series of lakes including Lake Gerald and Lake Roland, was historically categorized as oligotrophic but is now mesotrophic having experienced cultural eutrophication. A mass balance phosphorus budget model was constructed for the Twin Lakes system in Houghton, Co. Michigan for the 2022 stratified season. Additional spatial insights were gleaned through a survey of shoreline water quality, which corroborated the model results. The lakes currently experience substantial depletion of hypolimnetic dissolved oxygen during late summer stratification. A budget reveals approximately 22% (6.6 kg) of the current 29.5 kg total phosphorus inputs to Twin Lakes (during the …

Display Site Selection By Male Ruffed Grouse In The Upper Great Lakes Region, Seth Finkel

Dissertations, Master's Theses and Master's Reports

The Ruffed Grouse (Bonasa umbellus) is widely known for its characteristic territorial drumming display. In this study, I used ruffed grouse drumming survey data from Minnesota and Michigan, in a series of mixed logistic models, to identify drivers of drumming log selection by reproductive male ruffed grouse. I collected drumming stage data utilizing a paired-random sampling structure. I used information theoretic model selection to examine three sets of a priori mixed logistic models: one for the entirety of my Minnesota dataset, one consisting of stages identified in aspen stands in Minnesota, and one for my Michigan dataset. In …

Anthropogenic Influences On The Decline, Restoration, And Eco-Evolutionary Dynamics Of Lake Superior’S Coaster Brook Trout, Austin Johnson

Dissertations, Master's Theses and Master's Reports

The coaster brook trout is a life history variant of the brook trout (Salvelinus fontinalis) that is characterized by either lake residency or migration between stream and lake habitats. Coaster brook trout were once widespread throughout Lake Superior and its tributaries, but populations declined sharply in the late 19^th and early 20^th centuries. Historically, brook trout were a popular target of recreational and subsistence fishing in the Lake Superior basin, and it has been hypothesized that angling pressure combined with multiple forms of industrial development are what drove the coaster brook trout’s decline. In the mid …

Conservation Value Of Working Landscapes In Mesoamerica For Nearctic-Neotropical Migratory Birds, Samuel L. Oliveira

Dissertations, Master's Theses and Master's Reports

Populations of many of Nearctic-neotropical migratory birds have declined in the past several decades, recent estimates suggested a dramatic loss of 2.5 billion birds over the past 50 years in North America. Habitat loss and degradation represent a major threat in the tropics. Managed agroecosystems have the potential to mitigate some impacts of land conversion, however, little is known regarding the habitat quality provided by working landscapes in the overwintering range. In this research, we surveyed the migratory bird community in the rapidly expanding oil palm plantations in southern Mexico; and also the declining population of the Wood Thrush ( …

The Decline Of Lake Superior's Woodland Caribou: A Historical Gis Analysis, Jordan W. Kelley

Dissertations, Master's Theses and Master's Reports

Lake Superior’s woodland caribou have been declining since the early 1800s. This thesis asks: why? We hypothesize that as settlers expanded into the region, industrial development in woodland caribou habitat reduced woodland caribou persistence. Using an Historical Geospatial Information System (HGIS) analysis, we find that historical mining and railroad infrastructure are associated with woodland caribou extirpation, while wetlands and protected areas are associated with caribou persistence. We also conducted a stakeholder synthesis of the region to help understand diverse perspectives within and between advocacy coalitions that take different positions on the most effective caribou restoration policies. Beliefs on recovery options …

Effects Of Dissimilar Silvicultural Techniques On Small Mammal Communities In Michigan's Upper Peninsula, Breanna R. Gusick

Dissertations, Master's Theses and Master's Reports

Small mammal populations, and predators reliant upon them as food resources, are often challenged by conflicting objectives of timber production and maintenance of quality habitat. With over 70% of the landscape forested, and nearly one-third of the land privately owned, Michigan’s Upper Peninsula (UP) is a matrix of independent management strategies. To assess the effects of various silvicultural regeneration methods on small mammal populations in the Upper Peninsula, we trapped small mammals in experimental silviculture plots, whereby treatments varied by regeneration method (amount of residual canopy cover) and site preparation (i.e., control, tip-up, and scarification), and deer exclosures. We used …

Avian Haemosporidian Blood Parasite Diversity, Prevalence, And Distribution In Michigan’S Western Upper Peninsula, Maria M. Ferrer

Dissertations, Master's Theses and Master's Reports

Avian haemosporidian parasites, known as avian malaria (phylum Apicomplexa) can diminish an individual bird’s fitness by causing parasitemia, anemia, and reduced survival. Climate change is predicted to increase the spread of malarial parasites into more northerly latitudes where little is known about community compositions of these parasites. I assessed the prevalence and diversity of haemosporidian parasites in the first-ever community-level sampling of malaria in songbirds across the western Upper Peninsula of Michigan. In total, 179 blood samples were collected from birds representing 17 species, at five locations in the Upper Peninsula, including a mature forest, an early successional forest, and …

Spatial Heterogeneity Of Nitrogen Cycling Within And Across Freshwater Ecosystems, Erin K. Eberhard

Dissertations, Master's Theses and Master's Reports

Dinitrogen (N₂) fixation and denitrification are two nitrogen (N) cycling processes that despite differences in environmental requirements and constraints, co-occur in aquatic ecosystems. The overall goal of this dissertation was to evaluate how spatial heterogeneity of environmental variables 1) drive hot spots of N₂ fixation, denitrification rates and gene abundances in streams, 2) facilitate co-occurrence of these processes across wetland – stream – lake interfaces, and 3) affect differences in microbial community composition in streams across U.S. ecoregions. We found hot spots of both processes within 7 stream reaches in Michigan and Idaho, but rates of N …

Metagenomic Identification And Classification Of The Mercury-Methylating Gene Hgca In Response To Water Table And Plant Functional Group Manipulations In Peat Soil, Madeline Peterson

Dissertations, Master's Theses and Master's Reports

Methyl-mercury (MeHg) is a potent neurotoxin that threatens the health of humans and wildlife alike. Climate warming threatens to shift regional precipitation and climate regimes in peatland environments, which could destabilize northern peatlands and accelerate both Hg release from soil and MeHg production. Peatlands are among the leading hotspots for MeHg, yet little is known about the community composition or functional relationship of mercury-methylating microbes in response to varying environmental conditions. The recognized mercury-methylating genes responsible for this activity are the obligatory gene pair hgcA and hgcB. Metagenomic data from the full-factorial peatland mesocosm experiment PEATcosm was obtained to …

Denitrification And Nitrogen Fixation Commonly Co-Occur But Rates Vary Throughout The Year And In Different Environments, Kevin Nevorski

Dissertations, Master's Theses and Master's Reports

Denitrification and nitrogen fixation are nitrogen cycling processes that can occur simultaneously in streams but are rarely studied together. The overarching goal of this dissertation was to quantify temporal and spatial variation of these processes in streams across the USA, characterize the environmental drivers of that variation, and determine the role that denitrification plays in the carbon cycle. To characterize temporal variation in these processes, a 2-year study in the Pilgrim River in Michigan’s Upper Peninsula found no difference in rates among seasons but high day-to-day variation in rates of both processes (maximum daily change 4,390 μg N/m²/hr …

Controls On Autotrophic Respiration, Heterotrophic Respiration, And Decomposition In Northern Forested Rivers, Renn Schipper

Dissertations, Master's Theses and Master's Reports

Autotrophic respiration (AR), heterotrophic respiration (HR), and decomposition are important contributors to the carbon cycle in streams. It is important to understand how different environmental factors, such as canopy cover and dissolved organic carbon (DOC), influence these processes. DOC concentrations in northern forested streams are increasing, which may affect light and carbon availability. To examine the effects of DOC and canopy cover on these processes we measured gross primary production, ecosystem respiration and decomposition at 8 sites in 4 streams in the Upper Peninsula of Michigan and used quantile regression to estimate AR and HR. Among sites, AR and decomposition …

Functional Genetic Approaches To Provide Evidence For The Role Of Toolkit Genes In The Evolution Of Complex Color Patterns In Drosophila Guttifera, Mujeeb Olushola Shittu

Dissertations, Master's Theses and Master's Reports

Toolkit genes are set of genes that orchestrate the development of basic body plan of animals, and they are highly conserved in all animals. The co-option of the toolkit genes into the pigmentation pathway has led to the evolution of novel species. This study focuses on understanding how the complex color patterns in animals develop by using the Drosophila species in the quinaria group as models. We developed an mRNA in situ hybridization (ISH) protocol, which allowed us to study gene expression patterns in the abdomen of developing pupae of non-model Drosophila species (Chapter 2). Through ISH, we found that …

Applications Of Machine Learning In Microbial Forensics, Ryan B. Ghannam

Dissertations, Master's Theses and Master's Reports

Microbial ecosystems are complex, with hundreds of members interacting with each other and the environment. The intricate and hidden behaviors underlying these interactions make research questions challenging – but can be better understood through machine learning. However, most machine learning that is used in microbiome work is a black box form of investigation, where accurate predictions can be made, but the inner logic behind what is driving prediction is hidden behind nontransparent layers of complexity.

Accordingly, the goal of this dissertation is to provide an interpretable and in-depth machine learning approach to investigate microbial biogeography and to use micro-organisms as …

Regional Impacts Of Invasive Species And Climate Change On Black Ash Wetlands, Joseph Shannon

Dissertations, Master's Theses and Master's Reports

For more than a decade intensive research on the ecohydrology of black ash wetland ecosystems has been performed to understand these systems before they are drastically altered by the invasive species, emerald ash borer (EAB). In that time there has been little research aimed at the scale and persistence of the alterations. Three distinct but related research articles will be presented to demonstrate a method for moderate resolution mapping of black ash across its entire range, understand the relative impacts of EAB and climate change on probable future wetland conditions, and develop an experimental and modeling approach to quantify and …

Gis-Based Trending Analysis Of Cropland Associated With Riparian From 2008 To 2018 In Wisconsin, Yanyun Li

Dissertations, Master's Theses and Master's Reports

One of important characteristics of riparian area is to protect surface and underground water from nutrient contaminated runoff from nearby farmland. Comparing with the traditional fixed-width riparian buffer delineation, the Riparian Buffer Delineation Model (RBDM) to be used in this study, is a GIS-based tool designed to map variable-width riparian buffers by taking into consideration the watercourse and its associated floodplain. As the use of biofuels increases especially derived from corn, riparian areas are often converted to agricultural fields due to the nutrient rich soils and flat topography commonly found in these locations. Meanwhile, it also gives rise to nonpoint …

Life History Variation In Migratory Salmonid Populations, Christopher Adams

Dissertations, Master's Theses and Master's Reports

Over the last 150 years, many of the native migratory salmonid populations in North America have declined or been extirpated, and their native habitats have been significantly altered. Life history variation within and among migratory fish populations plays an important role in their persistence when faced with changing habitat conditions. One of the most extreme life history events in salmonids is the movement from lotic to lentic habitats, a migration that can span long distances and different habitat types. Understanding the factors affecting migratory life histories expressed by individuals within a population play an important role in dynamics and habitat …

The Effect Of Seasonality On Yellow Perch Ecology And Ecotoxicology Within Lake Manganese, Bailey Duxbury

Dissertations, Master's Theses and Master's Reports

Seasonality is a consistent component of aquatic ecosystems yet most fish biological and ecotoxicological studies commonly employ field sampling protocols focused during the warm open water season with minimal emphasis placed on winter sampling, especially for north-temperate latitude ecosystems. Such strategies limit our understanding of poikilotherm biology and ecology during the overwintering seasons. Here, I investigated seasonal changes in yellow perch (Perca flavescens) biology, ecology and ecotoxicology over a one-year period in Lake Manganese. Significant seasonality was observed for metrics including fish energy densities (kJ/g), gonadosomatic indices, whole-body lipid contents, and carbon stable isotope values (δ¹³C). …

Monitoring Mammal Community Shifts Across Silvicultural Treatments Utilizing Camera Traps And The Development Of Invertebrate- Derived Dna In Hardwood Forests Of North America, Shallen Gurtler

Dissertations, Master's Theses and Master's Reports

Mammal distribution and diversity is quickly changing as humans modify the landscape. In particular, silviculture, which is the practice of controlling the growth, structure, and quality of forests to meet the needs of society and the landowner, influences the habitat usage of mammals. Utilizing camera traps, I monitored shifts in mammal communities across different silviculture treatments in the northern hardwood forests of the Great Lakes region in North America. I assessed the community composition across six canopy treatments and three understory treatments with a total of 2,018 active camera trap nights with 3,321 detections over the course of 147 days. …

Livestock-Wildlife Dynamics And Subsequent Human Responses In Marginalized Communities Within Mexico’S Nationally Protected Areas, Deanna Seil

Dissertations, Master's Theses and Master's Reports

Entering the planet’s sixth mass-extinction, monitoring biodiversity and the factors which affect it is of the utmost importance. This study on the interaction of humans and their livestock with wildlife, and the impact of this interaction on wildlife conservation, took place in Santiago Coatepec, located within the Tehuacán-Cuicatlán Biosphere Reserve in Mexico. Wildlife interactions with livestock may depend upon species, season, ecological characteristics of the area, and livestock management practices. Using camera traps, field data, and interview data, I quantified livestock impact on wildlife behavior and community beliefs. Over two years, camera traps at 18 stations recorded 709 wildlife videos …

Plant Community Response To Novel Silvicultural Treatments In Great Lakes Northern Hardwoods, Stefan F. Hupperts

Dissertations, Master's Theses and Master's Reports

The objective of this dissertation is to assess plant community response across a range of silvicultural disturbances and test ecological hypotheses to better inform ecologists and forest managers. To provide context for the utility of revising silvicultural systems, I review natural disturbance regimes and historical practices that have shaped contemporary Great Lakes northern hardwood forests (Chapter 2). Further, I identify important ways to expand the silvicultural toolbox and better emulate natural disturbance regimes. Building on this theoretical underpinning, I investigate the initial regeneration and plant community response to two novel silvicultural experiments: the Northern Hardwood Experiment for Enhancing Diversity (NHSEED) …

Effects Of Invasive Watermilfoil And Seasonal Dynamics On Primary Production In Littoral Zones Of North-Temperate Lakes, Ryan R. Van Goethem

Dissertations, Master's Theses and Master's Reports

Climate change and species invasion are two agents of global change altering aquatic ecosystems worldwide. Submerged aquatic macrophytes control lake ecosystem processes through their direct and indirect interactions with other primary producers, but how their interactions may be altered by species invasions or how they function over full seasonal cycles in temperate lakes is poorly understood. We first addressed whether the presence of invasive watermilfoil (IWM) altered standing crops and gross primary pro-duction (GPP) of other littoral primary producers (macrophytes, phytoplankton, attached algae or periphyton) in littoral zones of 6 Michigan lakes. We found no differences in primary producer standing …

Examining Aspen Expansion From Before And After Prescribed Burning In A Native Fescue Grassland Through Geospatial Techniques, Christopher Anderson

Dissertations, Master's Theses and Master's Reports

Native fescue (Fescue spp.) grasslands of the Intermountain West have become increasingly scarce due to the advent of modern agriculture, the loss of Indigenous people’s land management practices, modern wildfire management and the extirpation of bison (Bison bison bison). Native grassland is a biodiversity hot-spot, is significant for carbon sequestration, and essential to many species of flora and fauna that occur in the ecosystem. Our study site, on the Rocky Mountain Front in Waterton Lakes National Park, Alberta Canada, consists of 30 discrete aspen stands (Populous tremuloides) which are encroaching on this declining shortgrass fescue …

Spatiotemporal Variability In Winter Severity: Consequences For White-Tailed Deer Populations And Habitat Sustainability, Grace Parikh

Dissertations, Master's Theses and Master's Reports

Winter in the northern Great Lakes presents a suite of challenging conditions for animals, in terms of limited food availability and increased energetic cost of locomotion and thermoregulation. Variable winter severity is liable to cause interannual fluctuations in habitat viability and use by animals, in addition to modulating physiological responses in animals to conserve energy. For example, white-tailed deer (Odocoileus virginianus) congregate at high densities under eastern hemlock (Tsuga canadensis) or northern white-cedar (Thuja occidentalis) stands, which provide forage, thermal cover, reduced snow depth, and enhanced vigilance. However, a suite of climatic, edaphic, and …

Biogeochemical Response To Vegetation And Hydrologic Change In An Alaskan Boreal Fen Ecosystem, Danielle L. Rupp

Dissertations, Master's Theses and Master's Reports

Boreal peatlands store approximately one third of the earth’s terrestrial carbon, locked away in currently waterlogged and frozen conditions. Peatlands of boreal and arctic ecosystems are affected increasingly by shifting hydrology caused by climate change. The consequences of these relatively rapid ecosystem changes on carbon cycling between the landscape and the atmosphere could provide an amplifying feedback to climate warming. Alternatively, the advancement of terrestrial vegetation into once waterlogged soils could uptake carbon as a sink. Previous work suggests that fens will become an increasingly dominant landscape feature in the boreal. However, studies investigating fens, their response to hydrologic and …

Modeling Canopy Effect In The Great Lakes Cladophora Model, Ankita Bakshi

Dissertations, Master's Theses and Master's Reports

Cladophora glomerata is a filamentous green alga native to the Great Lakes. However, its nuisance growth in phosphorus rich waters negatively affects the lakes’ aesthetic and water quality. The Great Lakes Cladophora Model (GLCM) v1, developed in 1982, was the first mechanistic model to simulate Cladophora growth basing phosphorus availability and environmental conditions followed by Cladophora Growth Model and GLCM v2. In this study, the light and temperature mediation factors for Cladophora net growth are revised as a necessary step prior to the development of a self-shading algorithm. The concept of a fixed-value, maximum achievable biomass (carrying capacity) employed in …