Life Sciences Commons^™

Isoseq Transcriptome Assembly Of C3 Panicoid Grasses Provides Tools To Study Evolutionary Change In The Panicoideae, Daniel S. Carvalho, Aime Nishimwe, James Schnable

Department of Agronomy and Horticulture: Faculty Publications

The number of plant species with genomic and transcriptomic data has been increasing rapidly. The grasses—Poaceae—have been well represented among species with published reference genomes. However, as a result the genomes of wild grasses are less frequently targeted by sequencing efforts. Sequence data from wild relatives of crop species in the grasses can aid the study of domestication, gene discovery for breeding and crop improvement, and improve our understanding of the evolution of C₄ photosynthesis. Here, we used long-read sequencing technology to characterize the transcriptomes of three C₃ panicoid grass species: Dichanthelium oligosanthes, Chasmanthium laxum, and …

History Of Grass Breeding For Grazing Lands In The Northern Great Plains Of The Usa And Canada, Kenneth P. Vogel, John Hendrickson

Department of Agronomy and Horticulture: Faculty Publications

• In the early 1930s there were millions of acres of extensively degraded grazing lands and abandoned and eroded cropland in the Northern Plains of the United States and Canada.

• Grass breeding and plant materials programs were established by both the US and Canadian governments and cooperating universities to develop revegetation materials.

• Efforts of a small number of research locations and people resulted in grass cultivars or varieties that were used to revegetate and preserve the soil on millions of acres of land.

• This is a brief history of the people, agencies, and universities that developed these …

Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner

Department of Agronomy and Horticulture: Faculty Publications

Grasses are diverse, spanning native prairies to high-yielding grain cropping systems. They are valued for their beauty and useful for soil stabilization, pollution mitigation, biofuel production, nutritional value, and forage quality; grasses encompass the most important grain crops in the world. There are thousands of distinct grass species and many have promiscuous hybridization patterns, blurring species boundaries. Resources for advancing the science and knowledgebase of individual grass species or their unique characteristics varies, often proportional to their perceived value to society. For many grasses, limited genetic information hinders research progress. Presented in this research topic is a brief snapshot of …

Cross Species Selection Scans Identify Components Of C4 Photosynthesis In The Grasses, Pu Huang, Anthony J. Studer, James C. Schnable, Elizabeth A. Kellogg, Thomas P. Brutnell

Department of Agronomy and Horticulture: Faculty Publications

C₄ photosynthesis is perhaps one of the best examples of convergent adaptive evolution with over 25 independent origins in the grasses (Poaceae) alone. The availability of high quality grass genome sequences presents new opportunities to explore the mechanisms underlying this complex trait using evolutionary biology-based approaches. In this study, we performed genome-wide cross-species selection scans in C₄ lineages to facilitate discovery of C₄ genes. The study was enabled by the well conserved collinearity of grass genomes and the recently sequenced genome of a C₃ panicoid grass, Dichanthelium oligosanthes. This method, in contrast to previous studies, …

Grass And Canada Goldenrod (Solidago Canadensis) Competition And Implications For Management In The Northern Tallgrass Prairie, Alexander J. Smart, Gary E. Larson, Peter J. Bauman

The Prairie Naturalist

Canada goldenrod (Solidago canadensis L.) is a native perennial forb that can form dense clonal patches and become weedy in pastures of the Northern Tallgrass Prairie Ecoregion. Our objectives were to determine 1) the competitive effects between Canada goldenrod and grass, 2) the relationship between Canada goldenrod stem density and grass biomass, and 3) the distribution of Canada goldenrod stem density at the pasture scale. We used regression analysis to develop a relationship between Canada goldenrod stem density and grass biomass. Additionally, we estimated the frequency distribution of Canada goldenrod stem density categories using three evenly distributed 100 × 100-m …

Escape From Preferential Retention Following Repeated Whole Genome Duplications In Plants, James C. Schnable, Xiaowu Wang, J. Chris Pires, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

The well supported gene dosage hypothesis predicts that genes encoding proteins engaged in dose–sensitive interactions cannot be reduced back to single copies once all interacting partners are simultaneously duplicated in a whole genome duplication. The genomes of extant flowering plants are the result of many sequential rounds of whole genome duplication, yet the fraction of genomes devoted to encoding complex molecular machines does not increase as fast as expected through multiple rounds of whole genome duplications. Using parallel interspecies genomic comparisons in the grasses and crucifers, we demonstrate that genes retained as duplicates following a whole genome duplication have only …

Effects Of Herbicides And Grazing On Floristic Quality Of Native Tallgrass Pastures In Eastern South Dakota And Southwestern Minnesota, Alexander J. Smart, Matthew J. Nelson, Peter J. Bauman, Gary E. Larson

Great Plains Research: A Journal of Natural and Social Sciences

Historic herbicide use and grazing have influenced natural diversity and quality of native pasturelands in the Great Plains. Floristic quality assessments are useful to assist agencies in prioritizing conservation practices to enhance native grasslands. The objective of this study was to determine the effects of past land-use practices on the floristic quality of remnant native pastures in eastern South Dakota and southwestern Minnesota. Floristic quality assessments were conducted on 30 native pastures and categorized by past management practices (herbicide application and grazing intensity). Mean coefficient of conservatism (C) and floristic quality index (FQI) were calculated for each site~Results showed that …

Vegetation Patterns In Relation To Topography And Edaphic Variation Nebraska Sandhills Prairie, P. W. Barnes, A. T. Harrison, S. P. Heinisch

School of Biological Sciences: Faculty Publications

Detailed studies on soil texture and moisture retention indicate a close association between edaphic features and the distribution and composition of plant communities along topographic gradients at Arapaho Prairie, a typical, semi-arid Nebraska Sandhills prairie. The vegetation characteristics of three major habitat types (ridge, slope, and valley) and several minor subtypes (swale, stable ridge, and eroding ridge) are recognized and quantitatively described. Texture analysis indicates that the soils of dune slopes and ridges are largely azonal and are very coarse with substantially lower fine fractions (silt-clay ~ 13-15%) than soils of the more lowland swale and valley sites where surfact …

Manual Of The Grasses Of The United States, Second Edition, A. S. Hitchcock, Agnes Chase

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

By the late A. S. HITCHCOCK (died December 16, 1935), principal botanist, Division of Plant Exploration and Introduction; second edition revised by AGNES CHASE, formerly senior botanist and later collaborator, Division of Plant Exploration and Introduction, Bureau of Plant Industry, Soils, and Agnculturat Engineering, Agricultural Research Administration, and research associate, United States National Museum, Smithsonian Institution.

Of all the plants of the earth the grasses are of the greatest use to the human race. To the grasses belong the cereals, sugarcane, sorghum, and the bamboos; and, since they furnish the bulk of the forage for domestic animals, the grasses are …

Vegetative Composition And Grazing Capacity Of A Typical Area Of Nebraska Sandhill Range Land, A. L. Frolik, W. O. Shepherd

Historical Research Bulletins of the Nebraska Agricultural Experiment Station

The sandhill area of Nebraska occupies approximately 20,000 square miles of the central portion of the state. Being unadapted to cultivation, the land is for the most part still covered with native vegetation. It is utilized primarily for the production of livestock, chiefly cattle. During the period 1931 to 1938 the sandhills carried annually an average of 1,041,000 cattle, which amounted to 31 per cent of the total number in the state. The management practices used in the Nebraska sandhills have gained national recognition as a good example of range conservation in the United States. The purpose of this study …

Manual Of The Grasses Of The United States, A. S. Hitchcock

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Introduction 1

Uses of grasses 1

Distribution of grasses 5

Morphology of grasses 6

Classification of grasses 10

Nomenclature 12

Common names 14

Scope of the manual 14

Gramineae (Poaceae), the grass family 15

Descriptions of the subfamilies and keys to the tribes 16

Subfamily 1. Festucoideae 16

Subfamily 2. Panicoideae 17

Descriptions of the tribes and keys to the genera 17

Tribe 1. Bambuseae 17

Tribe 2. Festuceae 17

Tribe 3. Hordeae 20

Tribe 4. Aveneae 21

Tribe 5. Agrostideae 22

Tribe 6. Zovsieae 24

Tribe 7. Chlorideae 24

Tribe 8. Phalarideae. 25

Tribe 9. Oryzeae 25

Tribe 10. …

The Identification Of The More Important Prairie Hay Grasses Of Nebraska By Their Vegetative Characters, F. D. Keim, G. W. Beadle, A. L. Frolik

Historical Research Bulletins of the Nebraska Agricultural Experiment Station

It is convenient and sometimes necessary to identify the grasses in their vegetative stage of growth. This is especially desirable in a study of the vegetation of native hay meadows and permanent pastures. This key is prepared as a guide in the identification of the more important prairie hay grasses of Nebraska. The meadows are often harvested before the floral parts of many of the grasses appear. If it is desired, therefore, to study the botanical composition of the native meadows, it becomes necessary to rely on identification of many of the grasses by means of vegetative characters.