Life Sciences Commons^™

A Global Agenda For Advancing Freshwater Biodiversity Research, Alain Maasri, Sonja C. Jähnig, Hendrik Freitag, 93 Co-Authors

Biology Faculty Publications

Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.

The Brown Bear Gut Microbiome: A Novel Tool For Conservation & Management, Sarah M. Trujillo

All NMU Master's Theses

Gut microbiomes (GMBs), complex communities of microorganisms inhabiting the gastrointestinal tracts of their hosts, perform countless micro-ecosystem services such as facilitating energy uptake and modulating immune responses. While scientists increasingly recognize the role GMBs play in host health, the role of GMBs in wildlife ecology and conservation has yet to be realized fully. Here, I use brown bears (Ursus arctos) as an ecological model to investigate (1) how both extrinsic and intrinsic factors influence GMB community membership and structure; and (2) the correlation between GMB membership and brown bear health metrics. To achieve these aims, I subsampled archived …

Resource Allocation And Phenotypic Plasticity Of Simultaneous Hermaphroditic Turtle Barnacles (Chelonibia Testudinaria), Kevin C. Cash

All HCAS Student Capstones, Theses, and Dissertations

This research addresses the knowledge gap of phenotypic plasticity in a commonly found and important species of epizoic barnacle, Chelonibia testudinaria. Limited research has been published regarding how phenotypic expression is mediated the spatial distribution of barnacles on a mobile host. To investigate this potential relationship, barnacles were collected from the backs of turtles along the beaches of Fort Lauderdale Florida. These barnacles were assessed for various phenotypic traits as well as their corresponding spatial distribution on the turtle carapace. Barnacles were safely removed from the carapace using a chisel before their preservation in ethanol. Barnacles were then numbered …

Panoramic Spatial Vision In The Bay Scallop Argopecten Irradians, Daniel R. Chappell, Tyler M. Horan, Daniel Isaac Speiser

Faculty Publications

We have a growing understanding of the light-sensing organs and light-influenced behaviours of animals with distributed visual systems, but we have yet to learn how these animals convert visual input into behavioural output. It has been suggested they consolidate visual information early in their sensory-motor pathways, resulting in them being able to detect visual cues (spatial resolution) without being able to locate them (spatial vision). To explore how an animal with dozens of eyes processes visual information, we analysed the responses of the bay scallop Argopecten irradians to both static and rotating visual stimuli. We found A. irradians distinguish between …

Desktop Scanning Electron Microscopy In Plant-Insect Interactions Research: A Fast And Effective Way To Capture Electron Micrographs With Minimal Sample Preparation, Sakshi Watts, Ishveen Kaur, Sukhman Singh, Bianca Jimenez, Jesus Chavana, Rupesh R. Kariyat

Biology Faculty Publications and Presentations

The ability to visualize cell and tissue morphology at a high magnification using scanning electron microscopy (SEM) has revolutionized plant sciences research. In plant-insect interactions studies, SEM based imaging has been of immense assistance to understand plant surface morphology including trichomes (plant hairs; physical defense structures against herbivores (Kaur and Kariyat, 2020a, 2020b; Watts and Kariyat, 2021), spines, waxes, and insect morphological characteristics such as mouth parts, antennae, and legs, that they interact with. While SEM provides finer details of samples, and the imaging process is simpler now with advanced image acquisition and processing, sample preparation methodology has lagged. The …

Characterizing The Temporal And Spatial Distribution Of The Cannonball Jellyfish (Stomolophus Meleagris) In The South Atlantic Bight, Lauren G. Faulk

Theses and Dissertations

The cannonball jellyfish, Stomolophus meleagris, is commercially harvested throughout its range in the tropical and sub-tropical Americas, including in the South Atlantic Bight, where an estimated 4,000 tons (less than 2.4% of the estimated stock in South Carolina during the spring) are harvested annually. Like many Scyphozoan jellyfish, cannonball jellies have high interannual variability and little is known about the environmental drivers of their distribution and phenology. To better understand the ecology of this targeted species, we used fisheries-independent abundance data of cannonball jellyfish from 2001 to 2019 collected by the Southeast Area Monitoring and Assessment Program (SEAMAP) throughout the …

Spiders You May Encounter While Social Distancing: A Field Guide To Oregon, Daniel K. Hufnagel

Anthós

This document is simply a short field guide on the many endearing spiders you have encountered or will potentially encounter while social distancing in Oregon. Included are journal entries for six different species of spider, with each log containing an illustration and a description of the physical appearance, behavior, and habitat of the arachnid listed. Also included is a basic diagram depicting the anatomy of the common spider.

Agricultural Conservation Practices And Aquatic Ecological Responses, Richard E. Lizotte, Peter C. Smiley, Robert B. Gillespie, Scott S. Knight

Faculty and Student Publications

Conservation agriculture practices (CAs) have been internationally promoted and used for decades to enhance soil health and mitigate soil loss. An additional benefit of CAs has been mitigation of agricultural runoff impacts on aquatic ecosystems. Countries across the globe have agricultural agencies that provide programs for farmers to implement a variety of CAs. Increasingly there is a need to demonstrate that CAs can provide ecological improvements in aquatic ecosystems. Growing global concerns of lost habitat, biodiversity, and ecosystem services, increased eutrophication and associated harmful algal blooms are expected to intensify with increasing global populations and changing climate. We conducted a …

A Year In Syntropy: Exploring Syntropic Agriculture, Ajah Eills

College Honors Program

Syntropic agriculture is a form of sustainable agriculture that originated in Brazil around 25 years ago. Although it has since spread throughout Brazil and Australia, there has yet to be a comprehensive study of the driving scientific principles behind syntropy. For my thesis, I conducted literature research and interviews with farmers, with the goal of describing the ecological principles on which syntropy is based, including its primary goal to improve soil health. Much of my thesis contrasted syntropic agriculture with conventional agriculture as practiced in the United States today, but I also explored the differences between syntropic agriculture and other …

Distributions And Habitat Associations Of Blue Point Pyrgulopsis And Blue Point Tryonia, Chenoa Janine Wilcox

UNLV Theses, Dissertations, Professional Papers, and Capstones

Springsnails and other crenophilic species are often of conservation concern due to endemism, narrow habitat requirements, and susceptibility to habitat degradation. Because there is a distinct lack of natural history information for many of these organisms, management of species that are of concern is often based on data from non-target species related to the species of interest. In this thesis, I provide background information regarding springsnails in western North America (Chapter 1), describe a study investigating the distribution and habitat associations of two springsnails endemic to a single spring (Chapter 2), and provide supplemental information on habitat characteristics associated with …

Role Of Secretory Leukocyte Protease Inhibitor In Urinary Tract Infection, Anne Rosen

Arts & Sciences Electronic Theses and Dissertations

Urinary tract infections (UTIs) affect 150 million people per year worldwide and can be difficult to diagnose and treat leaving room for other biomarkers to be used to define an infection. Secretory leukocyte protease inhibitor (SLPI), an antimicrobial protein also with antiprotease and anti-inflammatory properties, may be involved in host response to UTI. Here we use an established UPEC-UTI model to infect female Slpi knockout and wild type mice to show SLPI plays a role in microbial ecology of the bladder. Bacterial abundance is altered in urinary tracts and is positively correlated with SLPI in urine of wild type mice. …

Invasion Ecology And Response To Fire Of The Nonnative Fern Lygodium Microphyllum In The South Florida Everglades, Nicole Sebesta

FIU Electronic Theses and Dissertations

Lygodium microphyllum (Old World Climbing Fern (OWCF)) is a climbing fern native to tropical and subtropical regions of Australia, Asia, and Africa. First introduced to Florida as an ornamental in the 1960s, the fern has become a serious invasive in numerous Florida habitats, severely degrading native herbaceous and woody vegetation and altering fire behavior. One area with the greatest increase in OWCF cover is the sawgrass marsh of southern Everglades National Park (ENP), where prescribed fire is used for both maintenance of sawgrass marshes and management of OWCF infestations. However, the efficacy of OWCF control using fire in this habitat …

Subterranean Movement Inferred By Temporary Emigration In Barton Springs Salamanders (Eurycea Sosorum), Nathan F. Bendik​, Dee Ann Chamberlain, Thomas J. Devitt, Sarah E. Donelson, Bradley Nissen, Jacob D. Owen, Donelle Robinson, Blake N. Sissel, Kenneth Sparks

Agricultural and Environmental Sciences Student Research

Movement behavior is an important aspect of animal ecology but is challenging to study in species that are unobservable for some portion of their lives, such as those inhabiting subterranean environments. Using four years of robust-design capture-recapture data, we examined the probability of movement into subterranean habitat by a population of endangered Barton Springs salamanders (Eurycea sosorum), a species that inhabits both surface and subterranean groundwater habitats. We tested the effects of environmental variables and body size on survival and temporary emigration, using the latter as a measure of subterranean habitat use. Based on 2,046 observations of 1,578 individuals, we …

The Effect Of Changing Substrate On Arctic Aquatic Invertebrates Abundance, Tom Dolman

Michael D. Wilson Symposium

Climate change is directly affecting tundra ecosystems in northern regions, and warming temperatures have caused discontinuous permafrost and thawing sediments across the region. This project investigates how increasing erosion and the foraging patterns of migratory snow geese may degrade habitat for aquatic invertebrates in the upper Mast River, located in Wapusk National Park, Manitoba, Canada. In the past two decades, many of the important species of aquatic invertebrates have shown declines. Declining invertebrate populations are predicted to affect aquatic ecosystems and decrease the resources available to shorebirds and waterfowl, which breed and migrate through this area.

Cyclic Fluctuations Of Zooplankton Dynamics In A Tidal Salt-Marsh Basin, Jamaal Jacobs

Senior Theses

Zooplankton are pelagic aquatic animals that are limited in their movements by the water currents around them and are major links in aquatic food webs between primary producers and higher trophic levels. Their populations are temporally and spatially variable, as they are sensitive to changes in salinity, temperature, and dissolved oxygen. This is especially true in highly dynamic environments, like estuaries, where environmental conditions are highly variable across seasonal and daily cycles. In order to examine the variability in zooplankton populations across a tidal cycle, we collected zooplankton samples from North Inlet Estuary at 30-minute intervals over a half tidal …

Local Adaptation To Continuous Mowing Makes The Noxious Weed Solanum Elaeagnifolium A Superweed Candidate By Improving Fitness And Defense Traits, Jesus Chavana, Sukhman Singh, Alejandro Vazquez, Bradley O. Christoffersen, Alexis Racelis, Rupesh R. Kariyat

Biology Faculty Publications and Presentations

The role of disturbance in accelerating weed growth is well understood. While most studies have focused on soil mediated disturbance, mowing can also impact weed traits. Using silverleaf nightshade (Solanum elaeagnifolium), a noxious and invasive weed, through a series of field, laboratory, and greenhouse experiments, we asked whether continuous mowing influences growth and plant defense traits, expressed via different avenues, and whether they cascade into offspring. We found that mowed plants produced significantly less number of fruits, and less number of total seeds per plant, but had higher seed mass, and germinated more and faster. When three herbivores …

Effects Of Varying Heat Indexes On Habitat Utilization And Behavior On Captive Red-Ruffed Lemurs (Varecia Rubra), Jeffrey Gammon

The Pegasus Review: UCF Undergraduate Research Journal

The two captive red-ruffed lemurs (Varecia rubra) at the Central Florida Zoo experienced a more temperate climate and utilized a differing habitat than they would in their native range, Madagascar. Proper management of the species in captivity is crucial for its long-term survival as they are critically endangered. Over a four month period, heat index temperature, lemur behavior, and habitat utilization data were collected via an instantaneous scan sample. Variables were analyzed to characterize how variations in heat index alter habitat utilization and behavior of the captive lemurs. As the heat index increased, habitat use became more restricted …

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez

Biology Faculty Articles

Profiles of symbiotic microbial communities (“microbiomes”) can provide insight into the natural history and ecology of their hosts. Using high throughput DNA sequencing of the 16S rRNA V4 region, microbiomes of five shark species in South Florida (nurse, lemon, sandbar, Caribbean reef, and tiger) have been characterized for the first time. The microbiomes show species specific microbiome composition, distinct from surrounding seawater. Shark anatomical location (gills, teeth, skin, cloaca) affected the diversity of microbiomes. An in-depth analysis of teeth communities revealed species specific microbial communities. For example, the genus Haemophilus, explained 7.0% of the differences of the teeth microbiomes …

Molecular Characterization Of A Marine Turtle Tumor Epizootic, Profiling External, Internal And Postsurgical Regrowth Tumors, Kelsey Yetsko, Jessica A. Farrell, Nicholas B. Blackburn, Liam Whitmore, Maximilian R. Stammnitz, Jenny Whilde, Catherine B. Eastman, Devon Rollinson Ramia, Ana C. Leandro

School of Medicine Publications and Presentations

Sea turtle populations are under threat from an epizootic tumor disease (animal epidemic) known as fibropapillomatosis. Fibropapillomatosis continues to spread geographically, with prevalence of the disease also growing at many longer-affected sites globally. However, we do not yet understand the precise environmental, mutational and viral events driving fibropapillomatosis tumor formation and progression.

Here we perform transcriptomic and immunohistochemical profiling of five fibropapillomatosis tumor types: external new, established and postsurgical regrowth tumors, and internal lung and kidney tumors. We reveal that internal tumors are molecularly distinct from the more common external tumors. However, they have a small number of conserved potentially …

Thermal Acclimation Of Tropical Coral Reef Fishes To Global Heat Waves, Jacob L. Johansen, Lauren E. Nadler, Adam Habary, Alyssa J. Bowden, Jodie Rummer

Marine & Environmental Sciences Faculty Articles

As climate-driven heat waves become more frequent and intense, there is increasing urgency to understand how thermally sensitive species are responding. Acute heating events lasting days to months may elicit acclimation responses to improve performance and survival. However, the coordination of acclimation responses remains largely unknown for most stenothermal species. We documented the chronology of 18 metabolic and cardiorespiratory changes that occur in the gills, blood, spleen, and muscles when tropical coral reef fishes are thermally stressed (+3.0°C above ambient). Using representative coral reef fishes (Caesio cuning and Cheilodipterus quinquelineatus) separated by >100 million years of evolution and …

Analyses Of Coyote (Canis Latrans) Consumption Of Anthropogenic Material And Dietary Composition In Urban And Non-Urban Habitats, Audrey A. Hayes

Browse all Theses and Dissertations

Coyotes are a generalist species that have adapted to nearly every terrestrial habitat in the United States. The species’ success is heavily attributed to their omnivorous diets and tolerance for environments that are regularly disturbed. Because the larger predator species that typically act as apex predators are sensitive to highly fragmented landscapes, the coyote is the functioning apex predator in many ecosystems where large predators, such as wolves, have been extirpated. The coyotes’ ecological role in urban ecosystems has received much attention in the last few decades as the species’ presence in cities and suburbs has increased, along with human-coyote …

Soil Macroinvertebrate Responses To Wildfires In The Blue Ridge Mountains, Usa, Madeline Nicole Olliff, Bruce Snyder, Mac Callaham Jr., Melanie K. Taylor

Graduate Research Showcase

Title: Soil Macroinvertebrate Responses to Wildfires in the Blue Ridge Mountains, USA Authors: 1Madeline N. Olliff, 1Bruce A. Snyder, 2Melanie K. Taylor, and 2Mac A. Callaham

1Georgia College and State University, Milledgeville, Georgia, USA; 2USDA Forest Service, Southern Research Station, Athens, Georgia, USA

Abstract: Wildfires are of increasing concern in light of climate change, more frequent late summer droughts, and increasing incidence of human ignitions. There have been few studies examining the effects of wildland fires on soil macroinvertebrates in the Blue Ridge Mountains, in spite of the importance of these animals to soil processes, and their contributions to the …

Monitoring Relationships Between Corticosterone And Snake Fungal Disease In Timber Rattlesnakes (Crotalus Horridus) In Western Kentucky, John Bromley Hewlett

Murray State Theses and Dissertations

Over the past four decades, emergent fungal diseases have been the most devastating relative to species declines and extinctions. While most research has focused on fungal diseases affecting amphibians and bats, less has focused on diseases like snake fungal disease (SFD), caused by Ophidiomyces ophiodiicola (Oo). SFD was first described in 2006 in North America within a Timber rattlesnake (Crotalus horridus) population in New Hampshire. Since then SFD has been documented in 19 US states, one US territory (Puerto Rico), and Europe. SFD causes high mortality in some species, including the Eastern Massasauga rattlesnakes (Sistrurus …

Clarifying Patterns In Host Plant Use By Adelpha Butterflies (Nymphalidae: Limenitidinae), Karina Torres

University of the Pacific Theses and Dissertations

The remarkable diversity of plant-feeding insects could be explained by the dynamics of their plant associations, where host plant shifts and specialization onto a small fraction of available plants may promote diversification. Neotropical Adelpha butterflies contain a large number of species, and previous work indicated the colonization of a novel host plant family (Rubiaceae) fueled its rapid diversification. However, accumulating host records indicate wide taxonomic host breadth at family level and below. Here, we categorize Adelpha diet breadth based on known host plant relationships across the Neotropics and from Costa Rica, Ecuador and Brazil. We also use a diet breadth …

Changes In The Vertical Stratification Of Neotropical Nymphalidae At Forest Edges In Relation To Light And Temperature Conditions, Brian Koji Oye

University of the Pacific Theses and Dissertations

The composition of neotropical fruit-feeding nymphalid butterflies assemblages often varies by location and stratum within a forest. Recent work has shown that vertical stratification in particular may serve as barrier to gene flow, indicating the potential role vertical stratification may play in evolution. At forest edges, the distinction between assemblages has been described to decrease, with species considered to be canopy specialists descending to the forest understory. The similarity in light conditions between the canopy and understory strata at edges or disturbed habitat is hypothesized to be responsible for this phenomenon. We conducted a study using standardized sampling to document …

Effects Of Invasional Meltdown On Community Structure In Marine Ecosystems In The Damariscotta Estuary Of Maine, Kate Lazzeri

Student Research Poster Presentations 2021

Basibiont organisms form the foundation of marine ecosystems by providing additional space for new species to settle on as epibionts. Invasive epibionts may take advantage of this new basibiont presence, which leads to many harmful effects on native organisms such as competition for both resources and food. In some cases, invasive species facilitate recruitment of other invasive organisms, a phenomenon referred to as invasional meltdown, but it is not known if invasion of new basibionts increases invasive epibiont occurrence. The purpose of this study is to answer the following research questions: 1) does the invasion status of the basibiont alter …