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Articles 1 - 17 of 17
Full-Text Articles in Life Sciences
Restoring Polyhyrdoxybutyrate (Phb) Depolymerase Expression In A Bald Mutant Of Streptomyces Sp. Sfb5a, Youmna Moawad
Restoring Polyhyrdoxybutyrate (Phb) Depolymerase Expression In A Bald Mutant Of Streptomyces Sp. Sfb5a, Youmna Moawad
Honors Projects
Polyhydroxybutyrate (PHB) is a biodegradable, plastic-like polymer produced by some bacteria and degraded by others. The filamentous bacterium Streptomyces sp. SFB5A degrades PHB for growth using an extracellular PHB depolymerase, encoded by the phaZ gene. A morphological mutant of this bacterium, bld4, cannot form aerial filaments and cannot produce PHB depolymerase, despite having the phaZ gene. The inability to synthesize PHB depolymerase may be due to a mutation in a gene encoding one of its transcriptional regulators. A gene (lrp) coding for a potential transcriptional regulator is located 2,700 base pairs upstream from phaZ. Our goal …
Water Color: Inspiring Conservation Of Freshwater Ecosystems By Painting With Algae, Kate Lochridge
Water Color: Inspiring Conservation Of Freshwater Ecosystems By Painting With Algae, Kate Lochridge
Honors Projects
“Water Color: Inspiring Conservation of Freshwater Systems by Painting With Algae” is a project that focuses on raising awareness of harmful algal blooms in Lake Erie through the creation of algae-based paint. Its goal is to provide a multidisciplinary outlet for understanding complex interactions between the causes, effects, and solutions of Harmful Algal Blooms (HABs). The novel part of this project is the creation of watercolor paint from algae cells. This paint was used to create algae-based artwork that facilitates an aesthetic interaction with the science of HABs when other informative materials- such as journal articles- can be confusing and …
An Insider's Guide To Cell Biology, Katie Ludwig
An Insider's Guide To Cell Biology, Katie Ludwig
Honors Projects
An Insider's Guide to Cell Biology is a comic book that follows Alanine the amoeba who tells the reader all about how the cell works.
The Scoop On Composting: A Comprehensive Literature Review On Composting With A Focus On Grand Valley State University, Alexandria Snabes
The Scoop On Composting: A Comprehensive Literature Review On Composting With A Focus On Grand Valley State University, Alexandria Snabes
Honors Projects
This comprehensive review discusses the main microbial processes, methods, efficiency strategies, benefits, and drawbacks related to composting. Specifically, anaerobic, aerobic, and intermediate, or cold composting, decomposition processes are defined and assessed. This leads into a discussion of some common methods of composting, both large- and small-scale, which utilize these microbial processes to result in differing advantages and disadvantages. The efficiency of these methods can be increased using strategies that monitor oxygen levels, moisture levels, temperate levels, and overall size. Some benefits of composting discussed include diverting waste from landfills, improving soil nutrition and quality long-term, and increasing plant growth and …
Open System Metabolism Of The Grand River From Headwaters To Mouth, Colin J. Assenmacher
Open System Metabolism Of The Grand River From Headwaters To Mouth, Colin J. Assenmacher
Honors Projects
The Grand River is the longest river in Michigan and has been greatly impacted by human activities, particularly logging in the mid-1800s, which when coupled with 20th-century urbanization and continued agricultural use, led to historically poor river health. Despite this, actions throughout the past 50 years by federal, state, and local citizen involvement, have resulted in increased river health and broader water quality monitoring within the watershed. During the summer of 2021, rapid bioassessments targeting benthic macroinvertebrates were conducted along the Grand River, with the primary goal of following up on prior state-led surveys conducted at different locations along the …
Alterations To The Brain Following Traumatic Brain Injury, Jacqueline Mader
Alterations To The Brain Following Traumatic Brain Injury, Jacqueline Mader
Honors Projects
Traumatic brain injuries (TBIs) have been labeled as a modern-day epidemic, increasing exponentially with the advancement of technology and society. Gaining a better understanding of the cognitive paths, including the chemical and electrical signals of the brain, neural correlates, and possible interventions for TBI patients allows for the best possible outcome for every patient, and allows for the further advancement of care. By revising and reassessing the ways in which TBIs are categorized and described the prognosis for recovery paints a more realistic view for each individual patient case. The symptoms and impairments that may occur post-injury can be monitored …
Expression And Purification Of N-Terminally Acetylated Microtubule Binding Protein Tau, Abigail Fleurima
Expression And Purification Of N-Terminally Acetylated Microtubule Binding Protein Tau, Abigail Fleurima
Honors Projects
The microtubule-associated protein Tau (MAPT) plays a critical role in many neurodegenerative diseases. Tau functions to stabilize microtubule structures that are essential for transport within the neuron, and transport disruption leads to loss of neuronal function. Tau binding is regulated by phosphorylation with the help of kinases that add phosphate groups which block microtubule binding sites, and phosphatases that remove phosphate groups and expose the microtubule-binding regions. Tau can be found in hyper-phosphorylated states, which causes Tau to self-assemble into aggregates and prevent microtubule binding. It's clear that post-translational modifications (PTMs) of Tau play a key role in the dysregulation …
Function Of Spiny Dorsal Fin Erector Muscles In The Bluegill, Lepomis Macrochirus, Zakiyat Djabakatie
Function Of Spiny Dorsal Fin Erector Muscles In The Bluegill, Lepomis Macrochirus, Zakiyat Djabakatie
Honors Projects
Local motor control directly contributes to stability, which can be compromised by injury or multiple neuromuscular disorders. In addition, lack of sensory perception as experienced by decreased limb sensation can further deteriorate one‚Äôs quality of life. The goal of this study is to use bluegill (Lepomis macrochirus) fins as model systems to study and gain insights on local motor control and sensory perception to improve stability and locomotion in humans, especially in a rehabilitative state. We hypothesize that 1) when exposed to turbulence (T), bluegill will use the spiny dorsal fin to recover stability and muscle intensity and duration will …
Shelter Dogs Need A Home: The Effect Of Enrichment And Human Contact On The Welfare And Adoptability Of Shelter Dogs, Hannah G. Clark
Shelter Dogs Need A Home: The Effect Of Enrichment And Human Contact On The Welfare And Adoptability Of Shelter Dogs, Hannah G. Clark
Honors Projects
It comes as no surprise that an animal shelter can be a stressful place for dogs. Shelter conditions, accompanied by multiple, novel stimuli, produce a stressful environment that cause hormonal and behavioral responses in dogs housed in shelters. Many of the stereotypical behaviors produced by the stress of living in a shelter, which tend to worsen as length of stay increases, are undesirable to potential adopters. However, many studies have shown that enrichment with a variety of toys, exercise, and human interaction can buffer the stress response in shelter dogs and improve their well-being. Implementing obedience training and temporary fostering …
Pectin And Alginate Extraction To Treat Liquid Cafo Manure, Clare Sunderman
Pectin And Alginate Extraction To Treat Liquid Cafo Manure, Clare Sunderman
Honors Projects
For this project, various extraction methods were used to extract pectin from Pastinaca Sativa and alginate from Macrocystis. These extractions were then dried and used in treating 250mL of manure along with a CaCl2 or FeCl3 coagulant. It was found that CaCl2 was not as effective as FeCl3 in coagulating manure. But the results obtained suggest that pectin and alginate obtained with a simpler extraction method is just as effective as the highly purified and refined pectin and alginate produced for the food industry, in the treatment of CAFO manure. The liquid portion of the …
Unsupervised And Supervised Learning For Rna-Protein Interactions And Annotations, Kateland Sipe
Unsupervised And Supervised Learning For Rna-Protein Interactions And Annotations, Kateland Sipe
Honors Projects
This project analyzed the base and amino acid interactions and annotations through the use of unsupervised and supervised learning techniques. For unsupervised learning, clustering found the data was not able to be distinguished into clear groups which matched the original annotations through kmeans clustering and hierarchical clustering. For supervised learning, the use of random forest, glmnet, and deep learning neural networks were successful in creating accurate predictions. However, machine learning likely will not be able to replace the original complex program, but could be used for possible simplification.
Too Little Ph: How Freshwater Acidification Impacts The Abundance Of Macrophytes Consumed By Rusty Crayfish, Lauren Tucker, Paul Moore Dr., Jay Jones Mr.
Too Little Ph: How Freshwater Acidification Impacts The Abundance Of Macrophytes Consumed By Rusty Crayfish, Lauren Tucker, Paul Moore Dr., Jay Jones Mr.
Honors Projects
Anthropogenic activities such as the burning of fossil fuels result in increased atmospheric carbon dioxide (CO2) concentration. High levels of atmospheric CO2 cause chemical shifts in the carbon cycle. Changes in the carbon cycle due to increased CO2 levels lead to ocean and freshwater acidification. Freshwater acidification is problematic for species that synthesize their own shells as well as species that use olfaction for decision-making. Rusty crayfish (Faxonius rusticus) were subject to simulated freshwater acidification and fed two types of macrophyte, Chara (Chara braunii) and Myriopyllum (Myriophyllum sibiricum). A series …
Induced Pluripotent Stem Cell Cardiomyocytes Provide An In Vitro Model Of The Myocardial Environment For Investigating Stem Cell Therapies, Jacob M. Gunn
Honors Projects
Ischemic heart disease remains a major cause of death and disability worldwide (Moran Andrew E. et al., 2014). While interventions for heart disease have come a long way, restoring functionality to damaged myocardium remains a challenge. Both mechanical and electrical repair of the host myocardium are essential to salvage the damaged tissue. This is especially difficult following a myocardial infarction (MI) as the infarct area is subject to quick and extensive cell death via necrosis then apoptosis (Prabhu & Frangogiannis, 2016). Stem cells have emerged as a candidate for potential replacement therapies. Adult stem cells (ASCs) are taken from bone …
The Role Of The Golgi Elmo Proteins In Cell Adhesion In Arabidopsis Thaliana, Wesley James Hudson
The Role Of The Golgi Elmo Proteins In Cell Adhesion In Arabidopsis Thaliana, Wesley James Hudson
Honors Projects
Proper growth and development of plant cells is dependent upon successful cell adhesion between cells, and this is mostly mediated by pectin in the plant cell wall. Previously, the Kohorn Laboratory identified a non-enzymatic Golgi protein named ELMO1 as it is required for cell adhesion, likely acting as a scaffold for cell wall polymer synthesis. Plants with mutant ELMO1 demonstrate a weak defective cellular adhesion phenotype as well as reduced mannose content in the cell wall. ELMO1 has homologous proteins in at least 29 different vascular plants. These homologues have 2 possible deletions in their amino acid sequence, but protein …
Mutual Benefits Of Inducible Defenses To Crab Predators In The Blue Mussel Mytilus Edulis In A Multi-Predator Environment, Sophia Walton
Mutual Benefits Of Inducible Defenses To Crab Predators In The Blue Mussel Mytilus Edulis In A Multi-Predator Environment, Sophia Walton
Honors Projects
The blue mussel Mytilus edulis alters its phenotype in species-specific ways in response to either green crab (Carcinus maenus) or sea star (Asterias sp.) predation. Previous studies have shown that only sea stars induce changes in abductor muscle morphology, while green crabs generally alter the shape and thickness of shells. In the Western Gulf of Maine, Blue mussels collected from wave protected sites with abundant green crab predators were shown to have significantly thicker shells and larger adductor muscles than mussels collected from wave exposed sites with few green crab predators. The phenotypes of mussels originating …
Aortic Pressure And Heart Rate In The Lobster Homarus Americanus Are Modulated By Mechanical Feedback And Neuropeptides, Grace Marie Hambelton
Aortic Pressure And Heart Rate In The Lobster Homarus Americanus Are Modulated By Mechanical Feedback And Neuropeptides, Grace Marie Hambelton
Honors Projects
Baroreceptors are stretch receptors located in the aorta of mammals; in response to increased afterload, they elicit a decrease in heart rate, creating a negative feedback loop that lowers blood pressure. Although lobsters (Homarus americanus) do not have baroreceptors like mammals, closely related land crabs have been shown to have baroreceptor-like responses. Heart contraction is also regulated by the Frank-Starling response, where increasing stretch or preload increases the contractile force of the heart. In addition to these types of biomechanical modulations, lobsters use a central pattern generator, the cardiac ganglion, to maintain synchronicity of the heartbeat. The heart …
Characterization Of Yellow Family Proteins In Gryllus Bimaculatus, Alexandra W. Rubenstein
Characterization Of Yellow Family Proteins In Gryllus Bimaculatus, Alexandra W. Rubenstein
Honors Projects
Neuronal plasticity occurs in developing nervous systems, with adult organisms rarely able to recover from neurological damage. The cricket, Gryllus bimaculatus, is useful to study neuronal plasticity due to its reorganization of the auditory system in response to injury beyond development. When a cricket ear is removed and auditory afferents severed, a rare phenomenon occurs: the dendrites of interneurons on the deafferented side cross the typically-respected midline of the prothoracic ganglion to form functional synapses with auditory afferents from the opposite side. To find proteins involved in this phenomenon, the Horch Lab assembled a de novo transcriptome from neurons in …