Life Sciences Commons^™

Female Titin Mutant Mice Outperform Young And Old Males, Reese Ger

Scripps Senior Theses

Exercise performance is widely believed to generally be maximal among young males. However, little research has been conducted to investigate the impact of sex or age on muscle performance. This study investigated the effects of sex and age on forelimb and all limb grip strength performance in wildtype and titin mutant mice. Titin is the largest known protein, with known involvement in muscle function. The mice in this study were Ttn∆112-158 with a 75% deletion to the PEVK region of titin. Based on limited existing research, we hypothesized that wildtype mice would outperform all Ttn∆112-158 mice, males would outperform females …

Microbiological Investigation Of Local Native Clays And Samples From The Scripps Ceramic Studio, Kelly Fuller

Scripps Senior Theses

This study explores the relationship between microorganisms and clay using samples currently being utilized in the Lincoln Ceramics Studio at Scripps College. Clay science spans disciplines, from geology and soil science to industrial material development and artistic practices. Although biological processes have been thought to effect clay properties such as plasticity and malleability, the interplay between microorganisms and clay minerals has not been thoroughly investigated in the scientific community. Drawing from diverse disciplines, this research investigates the microbial ecology of clay bodies to unveil potential innovations in ceramics production. In this experiment, colony-forming unit (CFU) assays were performed in both …

Copper Resistance In Staphylococcus Epidermidis: Role Of The Multicopper Oxidase Gene, Caroline Sundal

Scripps Senior Theses

The ongoing struggle against antibiotic resistance and the lack of new antibiotic discoveries being made is a threat to global health. Alternate forms of antibacterial treatment are an important area of research to increase the treatment efficacy of clinical antimicrobial applications. In this research paper, we examine the model organism Staphylcoccus epidermidis, one of the leading causes of nosocomial infection. S. epidermidis normally resides on skin and mucus, however, can become an opportunistic pathogen if it invades the body, entering the bloodstream via the insertion of medical and prosthetic devices. Copper was a traditional therapy in ancient Egypt used for …

Pcb Remediation In Transitional Floodplain Forests Along The Housatonic River, Soleil Laurin

Scripps Senior Theses

Human development affects natural environments in more ways than climate change, from the introduction of nonnative species and deforestation to pollution and urbanization. This is a case study examining the effects of PCB remediation on transitional floodplain forest along the Housatonic River in Western Massachusetts. The Housatonic River had previously been contaminated with PCBs and portions had been remediated. This study aims to determine the effects this remediation had on transitional floodplain forests, as well as provide a preliminary biodiversity assessment for sites that are planned to be remediated of PCBs by the Environmental Protection Agency. The study was carried …

Oral Contraceptives And Affective Disorders: Neurobiology And Informed Choice, Sophia Mae Drezner

Scripps Senior Theses

Pregnancy prevention and female reproductive freedom have been some of the most contested political issues for decades. Abortion, a fundamental part of women’s healthcare, divides liberals and conservatives on an international scale. The consequences of unintended pregnancy without safe and reliable contraception are widespread, disproportionately impacting women of color, trans and non-binary folks, and poorer communities. The birth control pill is the most common form of oral contraception (OC) globally. Many people with ovaries begin the pill or other hormonal contraceptive (HC) methods as young as 11 years old. Exogenous progesterone and estrogen are known to impact mood, affect, physiology, …

Utilizing Amr Surveillance Data To Analyze Trends In Escherichia Coli Antibiotic Resistance Levels In The South African Provinces Of Gauteng And The Eastern Cape, Celia Maris

Scripps Senior Theses

Antimicrobial resistant bacterial pathogens pose an ongoing threat to universal public health by causing more severe manifestations of infectious diseases, leading to an increase in healthcare expenditures and higher global mortality rates. Therefore, developing strategies to combat bacterial antimicrobial resistance (AMR) is vital for the future of human health. One promising strategy is through the utilization of AMR surveillance programs. This study focused on using AMR surveillance data from South Africa to analyze changes in Escherichia coli resistance levels to numerous antibiotics between January 2012 and December 2022 in Gauteng Province and the Eastern Cape Province. The study aimed to …

Identification Of The Role Of Swra In Copper Induced Poly-Gamma-Glutamic Acid Production In Bacillus Subtilis, Maya Addison

Scripps Senior Theses

Each year over 2.8 million Americans are infected by an antibiotic resistant strain of bacteria with over 35, 000 dying as a result (CDC). The lack of development of new antibiotics has renewed interest in the antimicrobial properties of copper. Gram positive bacterium such as Bacillus subtilis produce poly-gamma-glutamic acid (γ-PGA) to sequester excess copper ions. swrA has shown to be essential for proper activation of the pgs operon by phosphorylated DegU via an unknown mechanism. This study seeks to determine the role of swrA in copper induced gamma-PGA production and if swrA and ppsB are involved in copper resistance. …

Racial Disparities In Liver Disease In The Us: Addressing The High Prevalence Of Hepatitis B Infection In The Apia Community, Lindsey L. Trinh, Lindsey Trinh

Scripps Senior Theses

Chronic liver disease and hepatocellular carcinoma are some of the leading causes of death in the United States, resulting in a number of annual deaths that has only increased over the past several decades. A vast proportion of these liver-related deaths is due to chronic hepatitis B infection, which currently affects approximately 1.2 million people in the US. However, the hepatitis B virus does not affect every racial group in the United States equally: Asian Americans experience a disproportionately high prevalence of HBV infection. In fact, even though the APIA community comprises only 4% of the US population, they account …

An Evaluation Of Antiparasitics Used To Treat The Sea Louse, Caligus Rogercresseyi, In Chilean Salmonid Farming, Dayla Woller

Scripps Senior Theses

Sea lice pose a global threat to open-net salmonid farming. As Chile is the second largest Atlantic salmon producer, they have a vested interest in mitigating infestations and increasing production. However, this will not be possible without 1) increased research on the underlying mechanisms behind sea lice infestations that will inform 2) governmental regulation of salmon farming. This increase in research and governmental regulation will only be possible through transparency on pesticide practices and sea louse monitoring data from companies operating in Chile. Taking these steps would bring Chile closer to being the largest producer of Atlantic salmon and an …

Cost Of Co-Infection In Peromyscus Leucopus Mice, Ananya Sagar

Scripps Senior Theses

Abstract

Co-infections occur frequently across humans & wildlife, and can have effects on host health. Despite the prevalence of microparasite-helminth co-infections, majority of the research focuses either on singular infections or on concurrent infections in a laboratory setting. This fails to take into account the interspecific interactions between the multiple parasites and the host in natural settings. The interactions could be direct by resource competition, or indirect via the host immune system. In our research, we studied the relationship between nematodes and coccidia in their host, Peromyscus leucopus mice, at the Mountain Lake Biological Station, Virginia. We further evaluated the …

Examining A Functional Interaction Between Chromatin Remodeler Chd1 And Histone H1 In D. Melanogaster, Breanna Kim

Scripps Senior Theses

Chromodomain-helicase-DNA-binding-protein-1 (CHD1) is a highly conserved ATP- dependent remodeling protein. It is localized to active genes and directs nucleosome spacing, while its loss has been linked to various human diseases, such as human prostate cancer. In Drosophila, CHD1 is important for fertility and wing development, and overexpression of CHD1 leads to severe wing vein defect phenotypes. The Linker Histone H1, which is known for maintaining heterochromatin and is associated with inactive genes, had been previously identified as a possible functional partner of CHD1, though the exact nature of their interaction is unclear. I undertook a genetic approach to examining the …

Identification And Sequence Analysis Of Set Superfamily Genes In Hymenopteran Insects, Tanima Joshi

Scripps Senior Theses

Post-translational chemical modifications of histones, the proteins that package DNA, are a key component of the “language” of epigenetics. SET (Suppressor of Variegation 39, Enhancer of Zeste, Trithorax) domain-containing proteins are crucial enzymes that establish histone methylations as a major part of the histone code. Studies using the fruit fly, Drosophila melanogaster, as a model organism have provided most of the known information on SET genes/protein diversity and function in insects. To expand our knowledge of this important protein family, I identified all SET domain-containing genes in a select group of insects belonging to the Hymenoptera order: wasps, bees, ants, …

Transactivation And Mitochondrial Activity Are Affected By High Temperature In C. Elegans Sperm, Jacqueline Mcvay

Scripps Senior Theses

Sexual reproduction has a conserved flaw in that it is temperature sensitive. Exposure to high temperature leads to male infertility, but little is known about the underlying mechanism. Understanding these mechanisms is important for agriculture and reproductive medicine. Using C. elegans, we investigated two potential aspects of male fertility that may be affected by high temperature conditions: activation of sperm by seminal fluid and sperm mitochondrial activity. There are two pathways for sperm activation in C. elegans: the SPE-8 pathway in hermaphrodites and the TRY-5 pathway in male seminal fluid. Hermaphrodite sperm with a mutation in spe-8 can …

Identification Of Imiquimod As A Potential Combination For Anti-Cd47 Antibodies In Cancer Therapy, Nicole Brittaney Pang

Scripps Senior Theses

The avenues of targeted immunotherapy offers a promise of less toxic treatment options for those battling different forms of cancer. Specifically, the process of hijacking a patient’s own immune system to fight cancer from within versus using external treatments like chemotherapy which is extremely damaging to the patient. One such avenue includes the usage of monoclonal antibodies as an effective modality for immunotherapy. Cluster of Differentiation 47 (CD47), also known as the ‘don’t eat me signal’, aids in cell proliferation and evasion of phagocytosis and has been found to be a target for stopping tumorigenesis. Previous research has been successful …

Relations Among Maternal And Paternal Behavior And Children's Stress Biology, S.K. Jiaming Lin, Stacey N. Doan, John Milton

Scripps Senior Theses

Parenting behavior has been shown to have a wide range of effects, influencing children’s psychological and biological stress outcomes. Most research focuses on maternal parenting behaviors, with few studies observing the effects of paternal behaviors or the influence of both parents on their children. In this study, the relationship between maternal and paternal parenting behaviors was examined in its association to predict children’s cortisol levels. Cultural differences in parenting styles was also observed. American (N=86) and Chinese (N=97) families participated in the study, with parents reporting their behaviors. Children’s cortisol was collected during a stressor task and correlational analysis was …

Linking Petal Cell Shape To Pollinator Mode In Mimulus, Emma Bekele

Scripps Senior Theses

Reproduction is essential for all organisms. In plants, reproduction relies on pollination. In addition to large-scale traits such as shape and color, flowers may use traits imperceptible to the naked eye in order to attract pollinators. One such trait may be conical cell shape of petal cells. Previous work has identified conical petal cells as providing a foothold for foraging bees, suggesting that conical cell shape is an adaptation to bee pollination. However, this hypothesis has not been fully tested and requires development of a rigorous methodology for quantifying cell shape. Here, we utilize natural variation in pollinator mode in …

Written In Bone: Damage Patterns In Agonopsis Vulsa Armor, Morgan Stewart

Scripps Senior Theses

Naturally occurring armor has evolved in many different classes of organisms, often in response to predation, although other factors may play a part. In this study, the scales of the benthic armored fish Agonopsis vulsa were examined for damage patterns in order to illuminate the life history and environmental interactions of the fish. Scales from the fish were systematically destroyed in the lab, and observations made from the damaged scales were used to create a categorical damage rating, which was applied to 34 specimens ranging in trunk length from 2.3 cm to 14.2 cm. The specimens were rendered as three-dimensional …

A Composite Review Of The Proposed Molecular Mechanisms And Genetic Components Underlying Parkinson’S Disease, Paige Brodrick

Scripps Senior Theses

Parkinson’s disease (PD) is a progressive neurodegenerative disorder characterized by the progressive death of dopaminergic neurons present in the substantia nigra. The clinical presentation of PD includes tremors, slowed movement (bradykinesia), muscle and limb rigidity, and difficulty with walking and balancing. While many environmental factors can affect the onset and progression of the disease, genetic mutations have a large influence. Of the identified PD-linked genetic mutations, mutations in the leucine-rich repeat kinase 2 (LRRK2) are one of the most common genetic causes of PD. Located in endosomes, LRRK2 has been shown to play a role in the sorting and endocytosis …

Role Of Managed Marine Areas On The Diversity And Individual Responses Of Rocky Intertidal Shore Grazers In Central Chile, Kathy Liu

Scripps Senior Theses

Many different types of marine benthic herbivores or “grazers” inhabit coastal intertidal zones and play a crucial role in inter- and shallow subtidal ecosystems. Chile has one of the most diverse intertidal zones, but many intertidal grazers are exploited for human consumption. Marine protected areas (MPAs) and marine management and exploitation areas (MEAs) are promising tools for Chile to combat over exploitation of these grazer and other marine resources. This study surveyed the impact of sites with contrasting management on the diversity and abundance of all intertidal grazers and their impact on the size frequency and shell length-body weight allometry …

Crispr Genetic Editing: Paths For Christian Acceptance And Analysis Of In Vivo And In Vitro Efficiency, Mandeep Sandhu

Scripps Senior Theses

With advancements in CRISPR-cas9 broadening the potential paths for clinical usage of genetic editing, conversations about genetic editing have grown to outside simply scientific communities and into mainstream conversations. This study focuses specifically on Christian discourse of genetic editing and locates four major tensions for many Christians when they think about genetic editing: beginning of life, Creator-human relationship, imago Dei, and stewardship. With these major concerns in mind, I identify epigenetics, somatic cell genetic editing, and in vivo genetic editing research as important research paths to pursue as they can potentially produce techniques that more Christian individuals would feel comfortable …

The Effect Of The Chromoshadow Domains Of Hhp1, Hpl1, And Hpl2 On Heterochromatin Protein Localization In Tetrahymena Thermophila, Claire Bagnani

Scripps Senior Theses

In the nucleus, post-translational modifications on histone N-terminal tails can determine how local DNA is packaged. In one case, T. thermophila proteins Hhp1, Hpl1, and Hpl2, all related to the Heterochromatin Protein 1 (HP1) family, are associated with heterochromatin and thus gene silencing. They may do this by binding to trimethylated lysine 9 and lysine 27, located on the tail of histone H3. One distinct region of these proteins, the chromodomain (CD), may bind these marks, while another region, the chromoshadow domain (CSD) homodimerizes to interact with other proteins. This study explores what effect, if any, the CSD has on …

Analyzing The Safety And Efficacy Of Fecal Microbiota Transplantations For Inflammatory Bowel Disease Using Clostridium Difficile Infection As A Reference, Cassie Chan

Scripps Senior Theses

Fecal microbiota transplantation (FMT) is the process by which fecal suspension from a healthy individual is transferred into the gastrointestinal tract of another individual in an attempt to cure certain diseases. This transplantation process has been accredited as being a potential remedy for a growing number of diseases that have been associated with gut microbial imbalances. Interest in FMT has largely been driven by the science community’s increasing interest in the gut microbiome and its role in potentially regulating a multitude of different functions and processes within the human body. One disease that has been found to respond exceptionally well …

Using Linear Mixed Models To Analyze Native And Non-Native Species Abundances In Coastal Sage Scrub, Kaylee Anderson

Scripps Senior Theses

Coastal Sage Scrub (CSS) is a low scrubland plant community native to the coasts of California, housing many threatened and endangered species. Due to the invasion of non-native plants, many areas of CSS have type converted to annual grasslands and the fire frequency has accelerated; fire in turn, may facilitate further invasion, leading to a loss of biodiversity. While many studies document post-fire succession in these communities, pre-fire data are rarely available for comparison, especially data on seedling emergence. I analyzed post-fire recovery of a type-converted grassland community, comparing seedling emergence data for the first and third year after fire …

Investigating The Influence Of Chd1 On Gene Expression In Drosophila Melanogaster Using Position Effect Variegation, Phuongngan Thi Bui

Scripps Senior Theses

Position Effect Variegation (PEV) is the mosaic expression of a gene that has been moved out of its optimal environment and into a different area on the chromosome. Changing a gene’s environment may have profound effects on its eligibility for proper expression, which is a complicated process regulated by many factors. The PEV phenomenon is used as an assay to study gene expression as regulated by chromatin structure. In this study, the Drosophila melanogaster white gene was used as a reporter to study the various effects of CHD1, a chromatin regulating factor, on PEV gene expression. Inspired by preliminary data …

The Impact Of Sea Surface Temperature On Outbreaks Of Acanthaster Planci On The Great Barrier Reef, Laura A. Grossman

Scripps Senior Theses

The causes of increasing outbreaks of Acanthaster planci on the Great Barrier Reef have been a point of hot debate in recent years. It is unknown whether the increased success is due to nutrient runoff, salinity levels, or a decrease in predation, among other possibilities. In this paper I argue that the primary influence on outbreak status is sea surface temperature. From existing literature, I demonstrate that sea surface temperature in the Great Barrier Reef has increased by 0.4°C per year over the past three decades. I attempt to tie this increase with an increase in frequency of A. planci …

Effects Of Phylogeny On Structural Correlations Of Vertebrate Eyes, Amanda Yl Jacobs

Scripps Senior Theses

Common ancestry prevents scientists from using traditional statistical tests in dimensional comparisons that span entire clades. Data in these cases are non-independent, so a variety of special statistical methods have been developed specifically for phylogenetic comparative analyses. A phylogenetic least squares method was used to re-examine four published datasets detailing structural correlates of eyes while factoring in the different ways the phylogeny was expected to affect the covariance in trait values. All analyses were carried out in a strict phylogenetic context, using published time-calibrated phylogenies and the statistical platform R. Specifically, Pagel’s lambda was used to determine how much of …

Shoulder Impingement In Water Polo Players, Kelly A. Davis

Scripps Senior Theses

Water polo is a highly dynamic and physically demanding sport that has heretofore not inspired nearly as much research as other overhead sports such as baseball or swimming. As in almost all overhead sports, water polo puts its players at high risks for shoulder injuries since the motions required to perform the sport at an optimum level push the limits of normal shoulder function.

Human shoulders are inherently unstable as a tradeoff to their flexibility. Because of this instability, many structures are required to work concurrently to keep the shoulder in place. These structures include muscles, ligaments and cartilages. It …

Relative Importance Of Male Song On Female Mate Selection In The Zebra Finch (Taeniopygia Guttata), Casey Sprague

Scripps Senior Theses

In the zebra finch (Taeniopygia guttata), song and its social context play an important role in female mate selection. The song of the zebra finch is unique in that it can only be produced by males, which makes the species ideal for analyzing the components of male song that influence female song preference and mate selection. There are three consistent features of zebra finch song that affect female mate preference: 1) the amount of time a male sings, 2) the size and complexity of his song repertoire, and 3) the structural conformation to species or population norms (reviewed …

The Affect Of Low Tide On The Digestion Of Balanus Glandula, The Acorn Barnacle., Jesse Osborn

Scripps Senior Theses

The rocky intertidal zone, experiencing fully marine and fully terrestrial conditions, has become increasingly investigated as a model ecosystem for studying the future implications of climate change. The barnacle, Balanus glandula, a common rocky intertidal inhabitant, plays an important role as a key prey item for many organisms. Low tide can be particularly challenging for barnacles as they are marine organisms subjected to the abiotic conditions of a terrestrial environment. The most stressful of these are increased temperature and decreased oxygen availability. This study aimed to investigate how low tide impacts the energy budget, specifically the digestion, of B. …

The Terrestrial Biogeochemical Cycle Of Barium: A Proposed Study To Examine Barium Flux In Mojave Desert Dust, Mehar Kaur

Scripps Senior Theses

Barium is a relatively abundant element in the crustal environments, Ba quantities can range from anywhere between 200ppm to 900ppm. Most common forms of Ba-minerals found in the environment are barite (BaSO₄), witherite (BaCO₃) and hollandite (Ba₂Mn₈O₁₆). Ba is a useful element; it is used in various industries as a component in drilling fluids, in medical research and in manufacturing of various substances such as glass, ceramics, printing paper etc. However high quantity of Ba can be potentially toxic for the human body and can impair plant growth. It is …