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- AHR; RB; tumor suppressor; marine fish; teleost; environmental toxicology; (1)
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Articles 1 - 24 of 24
Full-Text Articles in Life Sciences
Environmental Dna Sequencing Primers For Eutardigrades And Bdelloid Rotifers, Byron J. Adams, Jeremy Whiting, Elizabeth K. Costello, Kristen R. Freeman, Andrew P. Martin, Michael S. Robeson, Steve K. Schmidt
Environmental Dna Sequencing Primers For Eutardigrades And Bdelloid Rotifers, Byron J. Adams, Jeremy Whiting, Elizabeth K. Costello, Kristen R. Freeman, Andrew P. Martin, Michael S. Robeson, Steve K. Schmidt
Faculty Publications
Background: The time it takes to isolate individuals from environmental samples and then extract DNA from each individual is one of the problems with generating molecular data from meiofauna such as eutardigrades and bdelloid rotifers. The lack of consistent morphological information and the extreme abundance of these classes makes morphological identification of rare, or even common cryptic taxa a large and unwieldy task. This limits the ability to perform large-scale surveys of the diversity of these organisms. Here we demonstrate a culture-independent molecular survey approach that enables the generation of large amounts of eutardigrade and bdelloid rotifer sequence data directly …
An Intertidal Sea Star Adjusts Thermal Inertia To Avoid Extreme Body Temperatures, Sylvain Pincebourde, Eric Sanford, Brian Helmuth
An Intertidal Sea Star Adjusts Thermal Inertia To Avoid Extreme Body Temperatures, Sylvain Pincebourde, Eric Sanford, Brian Helmuth
Faculty Publications
The body temperature of ectotherms is influenced by the interaction of abiotic conditions, morphology, and behavior. Although organisms living in different thermal habitats may exhibit morphological plasticity or move from unfavorable locations, there are few examples of animals adjusting their thermal properties in response to short-term changes in local conditions. Here, we show that the intertidal sea star Pisaster ochraceus modulates its thermal inertia in response to prior thermal exposure. After exposure to high body temperature at low tide, sea stars increase the amount of colder than-air fluid in their coelomic cavity when submerged during high tide, resulting in a …
Complex Evolution Of A Highly-Conserved Microsatellite Locus In Several Fish Species, J.-X. Liu, Bert Ely
Complex Evolution Of A Highly-Conserved Microsatellite Locus In Several Fish Species, J.-X. Liu, Bert Ely
Faculty Publications
The evolutionary dynamics of a highly conserved microsatellite locus (Dla 11) were studied in several fish species. The data indicated that multiple types of compound microsatellites arose through point mutations that were sometimes followed by expansion of the derived motif. Furthermore, extensive length variation was detected among species in the regions immediately flanking the repeat region.
Sibship Reconstruction Demonstrates The Extremely Low Effective Population Size Of Striped Bass Morone Saxatilis In The Santee-Cooper System, South Carolina, Usa, Jin-Xian Liu, Bert Ely
Sibship Reconstruction Demonstrates The Extremely Low Effective Population Size Of Striped Bass Morone Saxatilis In The Santee-Cooper System, South Carolina, Usa, Jin-Xian Liu, Bert Ely
Faculty Publications
For organisms with great fecundity and high mortality in early life stages, such as shellfish or fishes, the need to match reproductive activity with environmental conditions conducive to spawning, fertilization, larval development and recruitment may result in extreme variance in reproductive success among individuals. The main objective of this study was to investigate evidence of large variance in the reproductive success of the striped bass Morone saxatilis in the Santee-Cooper system, South Carolina, USA. Seven microsatellite loci were analysed in 603 recruits representing three yearly cohorts from 1992 to 1994, and a group analysis was performed to identify full-sib families. …
Interaction Of Fish Aryl Hydrocarbon Receptor Paralogs (Ahr1 And Ahr2) With The Retinoblastoma Protein, Rebeka R. Merson, Sibel I. Karchner, Mark E. Hahn
Interaction Of Fish Aryl Hydrocarbon Receptor Paralogs (Ahr1 And Ahr2) With The Retinoblastoma Protein, Rebeka R. Merson, Sibel I. Karchner, Mark E. Hahn
Faculty Publications
The aryl hydrocarbon receptor (AHR) mediates the toxic effects of 2,3,7,8-tetrachlorodibenzo-pdioxin (TCDD) and related compounds. In some mammalian cell lines, TCDD induces G1 cell cycle arrest, which depends on an interaction between the AHR and the retinoblastoma tumor suppressor (RB). Mammals possess one AHR, whereas fishes possess two or more AHR paralogs that differ in the domains important for AHR-RB interactions in mammals. To test the hypothesis that fish AHR paralogs differ in their ability to interact with RB, we cloned RB cDNA from Atlantic killifish, Fundulus heteroclitus, and studied the interactions of killifish RB protein with killifish AHR1 and …
Differential Mortality Drives Life-History Evolution And Population Dynamics In The Fish Brachyrhaphis Rhabdophora, Jerald B. Johnson, J. Jaime Zuniga-Vega
Differential Mortality Drives Life-History Evolution And Population Dynamics In The Fish Brachyrhaphis Rhabdophora, Jerald B. Johnson, J. Jaime Zuniga-Vega
Faculty Publications
Life-history theory predicts that populations experiencing different levels of extrinsic mortality will evolve divergent reproductive strategies. Previous work in the live bearing fish Brachyrhaphis rhabdophora shows that individuals from populations that occur with piscivorous fish mature earlier and at smaller sizes and have more and smaller offspring than fish from populations without predators. However, until now, there have been no data to demonstrate that differences in mortality rates actually exist between predator and predator free sites. Here we present the results of a serial mark-recapture field study designed to estimate mortality rates in natural populations of B. rhabodophora from Costa …
Aintegumenta And Aintegumenta-Like6 Act Redundantly To Regulate Arabidopsis Floral Growth And Patterning, Beth A. Krizek
Aintegumenta And Aintegumenta-Like6 Act Redundantly To Regulate Arabidopsis Floral Growth And Patterning, Beth A. Krizek
Faculty Publications
An Arabidopsis (Arabidopsis thaliana) flower consists of four types of organs arranged in a stereotypical pattern. This complex floral structure is elaborated from a small number of floral meristem cells partitioned from the shoot apical meristem during reproductive development. The positioning of floral primordia within the periphery of the shoot apical meristem depends on transport of the phytohormone auxin with floral anlagen arising at sites of auxin maxima. An early marker of lateral organ fate is the AP2/ERF-type transcription factor AINTEGUMENTA (ANT), which has been proposed to act downstream of auxin in organogenic growth. Here, I show that …
My Two Boots ... A Walk Through The Wetlands. An Annual Outing For 700 Middle School Students, Julie Cwikla, Mark Lasalle, Sybil Wilner
My Two Boots ... A Walk Through The Wetlands. An Annual Outing For 700 Middle School Students, Julie Cwikla, Mark Lasalle, Sybil Wilner
Faculty Publications
No abstract provided.
Transcriptomic Analysis Of The Entomopathogenic Nematode Heterorhabditis Bacteriophora Tto1, Byron J. Adams, Xiaodong Bai, Todd A. Ciche, Sandra Clifton, Randy Gaugler, Parwinder S. Grewal, Saskia A. Hogenhout, John Spieth, Paul W. Sternberg, Richard K. Wilson
Transcriptomic Analysis Of The Entomopathogenic Nematode Heterorhabditis Bacteriophora Tto1, Byron J. Adams, Xiaodong Bai, Todd A. Ciche, Sandra Clifton, Randy Gaugler, Parwinder S. Grewal, Saskia A. Hogenhout, John Spieth, Paul W. Sternberg, Richard K. Wilson
Faculty Publications
Background: The entomopathogenic nematode Heterorhabditis bacteriophora and its symbiotic bacterium, Photorhabdus luminescens, are important biological control agents of insect pests. This nematode-bacterium-insect association represents an emerging tripartite model for research on mutualistic and parasitic symbioses. Elucidation of mechanisms underlying these biological processes may serve as a foundation for improving the biological control potential of the nematode-bacterium complex. This large-scale expressed sequence tag (EST) analysis effort enables gene discovery and development of microsatellite markers. These ESTs will also aid in the annotation of the upcoming complete genome sequence of H. bacteriophora. Results: A total of 31,485 high quality ESTs were generated …
Faculty Should Consider Peer Review As A Means Of Improving Students' Scientific Reasoning Skill, Briana Eileen Timmerman, Denise Strickland
Faculty Should Consider Peer Review As A Means Of Improving Students' Scientific Reasoning Skill, Briana Eileen Timmerman, Denise Strickland
Faculty Publications
The following article provides highlights of a larger body of work on the impact of peer review on undergraduate biology students’ scientific reasoning, scientific writing and attitudes. Results suggest that undergraduates, even freshman can be effective peer reviewers and that peer review improves scientific writing, content knowledge, and scientific reasoning skills. Students report peer review to be a beneficial experience both within the course and in terms of helping them to develop as aspiring scientists. Science faculty are therefore encouraged to consider incorporating peer review as a regular part of instruction.
From Cells To Coastlines: How Can We Use Physiology To Forecast The Impacts Of Climate Change?, Brian Helmuth
From Cells To Coastlines: How Can We Use Physiology To Forecast The Impacts Of Climate Change?, Brian Helmuth
Faculty Publications
The interdisciplinary fields of conservation physiology, macrophysiology, and mechanistic ecological forecasting have recently emerged as means of integrating detailed physiological responses to the broader questions of ecological and evolutionary responses to global climate change. Bridging the gap between large-scale records of weather and climate (as measured by remote sensing platforms, buoys and ground-based weather stations) and the physical world as experienced by organisms (niche-level measurements) requires a mechanistic understanding of how ‘environmental signals’ (parameters such as air, surface and water temperature, food availability, water flow) are translated into signals at the scale of the organism or cell (e.g. body temperature, …
Desiccation Survival In An Antarctic Nematode: Molecular Analysis Using Expressed Sequenced Tags, Byron J. Adams, Bishwo N. Adhikari, Diana H. Wall
Desiccation Survival In An Antarctic Nematode: Molecular Analysis Using Expressed Sequenced Tags, Byron J. Adams, Bishwo N. Adhikari, Diana H. Wall
Faculty Publications
Background: Nematodes are the dominant soil animals in Antarctic Dry Valleys and are capable of surviving desiccation and freezing in an anhydrobiotic state. Genes induced by desiccation stress have been successfully enumerated in nematodes; however we have little knowledge of gene regulation by Antarctic nematodes which can survive multiple environmental stresses. To address this problem we investigated the genetic responses of a nematode species, Plectus murrayi, that is capable of tolerating Antarctic environmental extremes, in particular desiccation and freezing. In this study, we provide the first insight into the desiccation induced transcriptome of an Antarctic nematode through cDNA library construction …
Fin-Mutant Female Zebrafish (Danio Rerio) Exhibit Differences In Association Preferences For Male Fin Length, Jennifer M. Gumm, Jennifer L. Snekser, M. Kathryn Lovine
Fin-Mutant Female Zebrafish (Danio Rerio) Exhibit Differences In Association Preferences For Male Fin Length, Jennifer M. Gumm, Jennifer L. Snekser, M. Kathryn Lovine
Faculty Publications
Females often choose to associate with males that have exaggerated traits. In fishes, this may reflect an overall preference for larger size in a potential mate. Female zebrafish (Danio rerio) prefer males with larger bodies but not longer fins. The availability of mutant and transgenic strains of zebrafish make this a unique model system in which to study the role of phenotypic variation in social and sexual behavior. We used mutant strains of zebrafish with truncated (short fin) and exaggerated (long fin) fins to further examine female preferences for fin length in dichotomous association tests. Wild type females showed no …
A Primitive Aphidiine Wasp In Albian Amber From Spain And A Northern Hemisphere Origin For The Subfamily (Hymenoptera: Braconidae: Aphidiinae), Jaime Ortega-Blanco, Daniel J. Bennett, Xavier Delclòs, Michael S. Engel
A Primitive Aphidiine Wasp In Albian Amber From Spain And A Northern Hemisphere Origin For The Subfamily (Hymenoptera: Braconidae: Aphidiinae), Jaime Ortega-Blanco, Daniel J. Bennett, Xavier Delclòs, Michael S. Engel
Faculty Publications
A description of a new genus and species of braconid, Archephedrus stolamissus, from Early Cretaceous (Albian) amber from Moraza-Peñacerrada I (Spain) is here provided. This is the first fossil Aphidiinae described in Cretaceous amber. The fossil has some typical characters of the subfamily but possesses a unique assemblage of characters among aphidiines, such as a fairly robust abdomen, with a more pronounced articulation between the first and second, instead of the second and third, metasomal segments, as well as several wing venational traits. The distribution of this and other aphidiine fossils, as well as their putative phylogenetic placement as …
A Remarkable Tiphiiform Wasp In Mid-Cretaceous Amber From Myanmar (Hymenoptera: Tiphiidae), Michael S. Engel, Jaime Ortega-Blanco, Daniel J. Bennett
A Remarkable Tiphiiform Wasp In Mid-Cretaceous Amber From Myanmar (Hymenoptera: Tiphiidae), Michael S. Engel, Jaime Ortega-Blanco, Daniel J. Bennett
Faculty Publications
The first tiphiid wasp (Aculeata: Euaculeata: Vespoidea: Tiphiiformes) in Cretaceous amber is described and figured. Thanatotiphia nyx, new genus and species, is represented by a male entombed in mid-Cretaceous (latest Albian) amber from Myanmar. Thanatotiphia possesses remarkable apomorphies in wing venation, lacks key traits of modern subfamilies, and is thus classified in a new subfamily, Thanatotiphiinae. The fossil is further shown to be nested well within the family, indicating that major lineages of Tiphiidae diverged by the mid-Cretaceous. The new taxon is compared with modern tiphiid subfamilies and the sparse fossil history of the family briefly overviewed.
Thermoregulation Of Male Elaphe Spiloides In An Agriculturally-Fragmented Forest In Illinois, C. Drew Foster, Sarabeth Klueh, Stephen J. Mullin
Thermoregulation Of Male Elaphe Spiloides In An Agriculturally-Fragmented Forest In Illinois, C. Drew Foster, Sarabeth Klueh, Stephen J. Mullin
Faculty Publications
Anthropogenic forest fragmentation increases the amount of edge habitat. Although edges are harsh environments for many native species, ratsnakes often prefer this habitat. We examined thermoregulatory effectiveness of Central Ratsnakes (Elaphe spiloides) using forest edges preferentially to determine if edge preference is driven by increased thermoregulatory efficiencies. Six male subjects were located every 1-2 days using radio-telemetry and temperature sensitive transmitters. Subjects did not thermoregulate more efficiently in edges than in forest. Snakes were thermoconformers in both habitat types suggesting edge preference might be driven by other factors.
Demographics Of A Geographically-Isolated Population Of Threatened Salamander (Caudata: Ambystomatidae) In Central Illinois, Stephen J. Mullin, Sarabeth Klueh
Demographics Of A Geographically-Isolated Population Of Threatened Salamander (Caudata: Ambystomatidae) In Central Illinois, Stephen J. Mullin, Sarabeth Klueh
Faculty Publications
Amphibian populations that use small isolated wetlands are often small in size, susceptible to stochastic extinction processes, and have little to no contact with other populations. One can ascertain the persistence of such populations only by obtaining data that allow the prediction of future changes in population’s size, and propensity to achieve a sustainable number of individuals. The number of metamorphosing larvae leaving a pond predicts the viability of a salamander population, and thus, the number recruited into the terrestrial adult population. The Jefferson Salamander, Ambystoma jeffersonianum, is a listed threatened species in Illinois, occurring at fewer than 15 ponds …
A Survey Of Reptiles And Amphibians On Kinmen Island, Taiwan, Daniel Saenz, Heather V. Podlipny, Pei-Yu Tasi, Brent Burt, Hsiao-Wei Yuan
A Survey Of Reptiles And Amphibians On Kinmen Island, Taiwan, Daniel Saenz, Heather V. Podlipny, Pei-Yu Tasi, Brent Burt, Hsiao-Wei Yuan
Faculty Publications
Little is known about the reptiles and amphibians of Kinmen Island, Taiwan. Until recently, Kinmen had been off-limits to outsiders. It wasn’t until the mid 1990’s that civilian travel was allowed to and from the island. We surveyed 8 sites from 19 May through 18 July 2005, using 15 m drift fences with collapsible funnel traps on the ends. We documented encounters with animals outside the traps and observed 258 individuals of 7 species during our survey. The herpetofauna encountered consisted of two anuran, two lizard, and three snake species. The two anuran species made up over 97% of the …
Ecological Parameters Of Coluber Constrictor Etheridgei, With Comparisons To Other Coluber Constrictor Subspecies, Robert R. Fleet, D. Craig Rudolph, J. D. Camper, J. Niederhofer
Ecological Parameters Of Coluber Constrictor Etheridgei, With Comparisons To Other Coluber Constrictor Subspecies, Robert R. Fleet, D. Craig Rudolph, J. D. Camper, J. Niederhofer
Faculty Publications
In 1998, we conducted a radio-telemetry study of Coluber constrictor etheridgei (Tan Racer) in the Angelina National Forest in eastern Texas. Individuals were located once daily from 12 June to 14 August. We determined home-range size, movement distances, movement frequency, and habitat use for this short-term study. We also determined food habits of this population by examination of fecal samples. We compared these parameters to other Racer taxa in Utah (C. c. mormon [Western Yellow-bellied Racer]), Kansas (C. c. fl aviventris [Eastern Yellow-bellied Racer]), and South Carolina (C.c. priapus [Southern Black Racer]). Compared to these populations, Texas Racers exhibited larger …
Seal Bounties In Maine And Massachusetts, 1888 To 1962, Barbarai Lelli, David Harris Ph.D, Aboueissa Abouel-Makarim
Seal Bounties In Maine And Massachusetts, 1888 To 1962, Barbarai Lelli, David Harris Ph.D, Aboueissa Abouel-Makarim
Faculty Publications
Maine and Massachusetts paid bounties on seals during the 19th and 20th centuries. To determine the number of seals killed for bounty, we examined historical records of bounty claims, and used geographic information systems and multiple linear regression to find predictors of places where large numbers of bounties were paid. We found records of 24,831 bounties paid in Maine (1891-1945) and 15,690 in Massachusetts (1888-1962), Considering possible fraud, missing data, and seals struck and lost, this suggests that 72,284 to 135,498 seals were killed in the bounty hunt, probably enough to account for regional declines in seal populations. Larger numbers …
Subcellular Localization Of Marine Bacterial Alkaline Phosphatases, H. Luo, Ronald Benner, R. A. Long, Jianjun Hu
Subcellular Localization Of Marine Bacterial Alkaline Phosphatases, H. Luo, Ronald Benner, R. A. Long, Jianjun Hu
Faculty Publications
Bacterial alkaline phosphatases (APases) are important enzymes in organophosphate utilization in the ocean. The subcellular localization of APases has significant ecological implications for marine biota but is largely unknown. The extensive metagenomic sequence databases from the Global Ocean Sampling Expedition provide an opportunity to address this question. A bioinformatics pipeline was developed to identify marine bacterial APases from the metagenomic databases, and a consensus classification algorithm was designed to predict their subcellular localizations. We identified 3,733 bacterial APase sequences (including PhoA, PhoD, and PhoX) and found that cytoplasmic (41%) and extracellular (30%) APases exceed their periplasmic (17%), outer membrane (12%), …
Effects Of Light And Group Size On The Activity Of Wood Frog Tadpoles (Rana Sylvatica) And Their Response To A Shadow Stimulus, K. V. Mcclure, J. W. Mora, Geoffrey R. Smith
Effects Of Light And Group Size On The Activity Of Wood Frog Tadpoles (Rana Sylvatica) And Their Response To A Shadow Stimulus, K. V. Mcclure, J. W. Mora, Geoffrey R. Smith
Faculty Publications
No abstract provided.
The Malina Oceanographic Expedition: How Do Changes In Ice Cover, Permafrost And Uv Radiation Impact On Biodiversity And Biogeochemical Fluxes In The Arctic Ocean?, Phillippe Massicotte, Rainer Amon, David Antoine, Philippe Archambault, Sergio Balzano, Simon Bélanger, Ronald Benner, Dominique Boeuf, Annick Bricaud, Flavienne Bruyant, Gwenaëlle Chaillou, Malik Malik, Bruno Charrière, Jing Chen, Hervé Claustre, Pierre Coupel, Nicole Delsaut, David Doxaran, Et. Al.
The Malina Oceanographic Expedition: How Do Changes In Ice Cover, Permafrost And Uv Radiation Impact On Biodiversity And Biogeochemical Fluxes In The Arctic Ocean?, Phillippe Massicotte, Rainer Amon, David Antoine, Philippe Archambault, Sergio Balzano, Simon Bélanger, Ronald Benner, Dominique Boeuf, Annick Bricaud, Flavienne Bruyant, Gwenaëlle Chaillou, Malik Malik, Bruno Charrière, Jing Chen, Hervé Claustre, Pierre Coupel, Nicole Delsaut, David Doxaran, Et. Al.
Faculty Publications
The MALINA oceanographic campaign was conducted during summer 2009 to investigate the carbon stocks and the processes controlling the carbon fluxes in the Mackenzie River estuary and the Beaufort Sea. During the campaign, an extensive suite of physical, chemical and biological variables was measured across seven shelf–basin transects (south-north) to capture the meridional gradient between the estuary and the open ocean. Key variables such as temperature, absolute salinity, radiance, irradiance, nutrient concentrations, chlorophyll-a concentration, bacteria, phytoplankton and zooplankton abundance and taxonomy, and carbon stocks and fluxes were routinely measured onboard the Canadian research icebreaker CCGS Amundsen and from a barge …
Within-Pond Oviposition Site Selection In The Wood Frog (Rana Sylvatica), A. A. Brindle, S. B. Karr, Geoffrey R. Smith, Jessica E. Rettig
Within-Pond Oviposition Site Selection In The Wood Frog (Rana Sylvatica), A. A. Brindle, S. B. Karr, Geoffrey R. Smith, Jessica E. Rettig
Faculty Publications
No abstract provided.