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Full-Text Articles in Life Sciences

Ne Stem 4u Afterschool Intervention Leads To Gains In Stem Content Knowledge For Middle School Youth, Christine E. Cutucache, Taylor Boham, Jamie Luhr, Amie Sommers, Nikolaus Stevenson, Erkko Sointu, Kati Mäkitalo‐Siegl, Sirpa Kärkkäinen, Teemu Valtonen, Neal Grandgenett, William Tapprich Dec 2018

Ne Stem 4u Afterschool Intervention Leads To Gains In Stem Content Knowledge For Middle School Youth, Christine E. Cutucache, Taylor Boham, Jamie Luhr, Amie Sommers, Nikolaus Stevenson, Erkko Sointu, Kati Mäkitalo‐Siegl, Sirpa Kärkkäinen, Teemu Valtonen, Neal Grandgenett, William Tapprich

Biology Faculty Publications

Afterschool interventions in STEM are linked to learning gains during the school day. These opportunities engage and excite students about STEM concepts since they observe a more hands-on, project-oriented approach. Often these opportunities for afterschool interventions are infrequent in nature and leave gaps for students in their maturation and understanding. Herein we describe the first report of an afterschool intervention, named NE STEM 4U, targeting socioeconomically disadvantaged middle school youth via a twice weekly, year-long intervention, studied across two years. We assessed the impact of this program on i.) short-term, individual student gains in STEM content knowledge and ii.) delivery …


Miniscule Differences Between Sex Chromosomes In The Giant Genome Of A Salamander, Melissa C. Keinath, Nataliya Y. Timoshevskaya, Vladimir A. Timoshevskiy, S. Randal Voss, Jeramiah J. Smith Dec 2018

Miniscule Differences Between Sex Chromosomes In The Giant Genome Of A Salamander, Melissa C. Keinath, Nataliya Y. Timoshevskaya, Vladimir A. Timoshevskiy, S. Randal Voss, Jeramiah J. Smith

Biology Faculty Publications

In the Mexican axolotl (Ambystoma mexicanum), sex is determined by a single Mendelian factor, yet its sex chromosomes do not exhibit morphological differentiation typical of many vertebrate taxa that possess a single sex-determining locus. As sex chromosomes are theorized to differentiate rapidly, species with undifferentiated sex chromosomes provide the opportunity to reconstruct early events in sex chromosome evolution. Whole genome sequencing of 48 salamanders, targeted chromosome sequencing and in situ hybridization were used to identify the homomorphic sex chromosome that carries an A. mexicanum sex-determining factor and sequences that are present only on the W chromosome. Altogether, …


Effect Of Temperature Change On Synaptic Transmission At Crayfish Neuromuscular Junctions, Yuechen Zhu, Leo De Castro, Robin L. Cooper Dec 2018

Effect Of Temperature Change On Synaptic Transmission At Crayfish Neuromuscular Junctions, Yuechen Zhu, Leo De Castro, Robin L. Cooper

Biology Faculty Publications

Ectothermic animals in areas characterised by seasonal changes are susceptible to extreme fluctuations in temperature. To survive through varied temperatures, ectotherms have developed unique strategies. This study focuses on synaptic transmission function at cold temperatures, as it is a vital component of ectothermic animals' survival. For determining how synaptic transmission is influenced by an acute change in temperature (20°C to 10°C within a minute) and chronic cold (10°C), the crayfish (Procambarus clarkii) neuromuscular junction (NMJ) was used as a model. To simulate chronic cold conditions, crayfish were acclimated to 15°C for 1 week and then to 10°C for …


Reducing Protected Lands In A Hotspot Of Bee Biodiversity: Bees Of Grand Staircase-Escalante National Monument, Joseph S. Wilson, Matt Kelly, Olivia Messinger Carril Dec 2018

Reducing Protected Lands In A Hotspot Of Bee Biodiversity: Bees Of Grand Staircase-Escalante National Monument, Joseph S. Wilson, Matt Kelly, Olivia Messinger Carril

Biology Faculty Publications

Grand Staircase-Escalante National Monument is a federally protected area found in central southern Utah. Designated in 1996 by President William J. Clinton, it was recently reduced in size by President Donald J. Trump in a proclamation that turned the one large monument into three smaller ones. A long-term, standardized study of the bees had been conducted from 2000–2003, revealing 660 species. The bee communities of the area are characterized by being spatially heterogeneous; most of the bees occur in isolated areas, with only a few being both abundant and widespread. Here we examine what affect the recent resizing of the …


Long-Term Experimental Hybridisation Results In The Evolution Of A New Sex Chromosome In Swordtail Fish, Paolo Franchini, Julia C. Jones, Peiwen Xiong, Susanne Kneitz, Zachariah Gompert, Wesley C. Warren, Ronald B. Walter, Axel Meyer, Manfred Schartl Dec 2018

Long-Term Experimental Hybridisation Results In The Evolution Of A New Sex Chromosome In Swordtail Fish, Paolo Franchini, Julia C. Jones, Peiwen Xiong, Susanne Kneitz, Zachariah Gompert, Wesley C. Warren, Ronald B. Walter, Axel Meyer, Manfred Schartl

Biology Faculty Publications

The remarkable diversity of sex determination mechanisms known in fish may be fuelled by exceptionally high rates of sex chromosome turnovers or transitions. However, the evolutionary causes and genomic mechanisms underlying this variation and instability are yet to be understood. Here we report on an over 30-year evolutionary experiment in which we tested the genomic consequences of hybridisation and selection between two Xiphophorus fish species with different sex chromosome systems. We find that introgression and imposing selection for pigmentation phenotypes results in the retention of an unexpectedly large maternally derived genomic region. During the hybridisation process, the sex-determining region of …


The Contribution Of The Descending Pain Modulatory Pathway In Opioid Tolerance, Lindsay M. Lueptow, Amanda K. Fakira, Erin N. Bobeck Nov 2018

The Contribution Of The Descending Pain Modulatory Pathway In Opioid Tolerance, Lindsay M. Lueptow, Amanda K. Fakira, Erin N. Bobeck

Biology Faculty Publications

Opioids remain among the most effective pain-relieving therapeutics. However, their long-term use is limited due to the development of tolerance and potential for addiction. For many years, researchers have explored the underlying mechanisms that lead to this decreased effectiveness of opioids after repeated use, and numerous theories have been proposed to explain these changes. The most widely studied theories involve alterations in receptor trafficking and intracellular signaling. Other possible mechanisms include the recruitment of new structural neuronal and microglia networks. While many of these theories have been developed using molecular and cellular techniques, more recent behavioral data also supports these …


Meta-Analysis Challenges A Textbook Example Of Status Signalling And Demonstrates Publication Bias, Alfredo Sánchez-Tójar, Shinichi Nakagawa, Moisès Sánchez-Fortún, Dominic A. Martin, Sukanya Ramani, Antje Girndt, Veronika Bókony, Bart Kempenaers, András Liker, David F. Westneat, Terry Burke, Julia Schroeder Nov 2018

Meta-Analysis Challenges A Textbook Example Of Status Signalling And Demonstrates Publication Bias, Alfredo Sánchez-Tójar, Shinichi Nakagawa, Moisès Sánchez-Fortún, Dominic A. Martin, Sukanya Ramani, Antje Girndt, Veronika Bókony, Bart Kempenaers, András Liker, David F. Westneat, Terry Burke, Julia Schroeder

Biology Faculty Publications

The status signalling hypothesis aims to explain within-species variation in ornamentation by suggesting that some ornaments signal dominance status. Here, we use multilevel meta-analytic models to challenge the textbook example of this hypothesis, the black bib of male house sparrows (Passer domesticus). We conducted a systematic review, and obtained primary data from published and unpublished studies to test whether dominance rank is positively associated with bib size across studies. Contrary to previous studies, the overall effect size (i.e. meta-analytic mean) was small and uncertain. Furthermore, we found several biases in the literature that further question the support available …


Derivatives Of A Benzoquinone Acyl Hydrazone With Activity Against Toxoplasma Gondii, A. G. Sanford, T. T. Schulze, L. P. Potluri, G. F. Watson, E. B. Darner, S. J. Zach, R. M. Hemsley, A. I. Wallick, R. C. Warner, S. A. Charman, X. Wang, J. L. Vennerstrom, P. H. Davis Nov 2018

Derivatives Of A Benzoquinone Acyl Hydrazone With Activity Against Toxoplasma Gondii, A. G. Sanford, T. T. Schulze, L. P. Potluri, G. F. Watson, E. B. Darner, S. J. Zach, R. M. Hemsley, A. I. Wallick, R. C. Warner, S. A. Charman, X. Wang, J. L. Vennerstrom, P. H. Davis

Biology Faculty Publications

Toxoplasma gondii is an obligate intracellular parasite with global incidence. The acute infection, toxoplasmosis, is treatable but current regimens have poor host tolerance and no cure has been found for latent infections. This work builds upon a previous high throughput screen which identified benzoquinone acyl hydrazone (KG8) as the most promising compound; KG8 displayed potent in vitro activity against T. gondii but only marginal in vivoefficacy in a T. gondii animal model. To define the potential of this new lead compound, we now describe a baseline structure-activity relationship for this chemotype. Several derivatives displayed IC50's comparable …


Recruitment, Survival, And Parasitism Of Monarch Butterflies (Danaus Plexippus) In Milkweed Gardens And Conservation Areas, Emily A. Geest, L. Lareesa Wolfenbarger, John P. Mccarty Nov 2018

Recruitment, Survival, And Parasitism Of Monarch Butterflies (Danaus Plexippus) In Milkweed Gardens And Conservation Areas, Emily A. Geest, L. Lareesa Wolfenbarger, John P. Mccarty

Biology Faculty Publications

Monarch butterflies (Danaus plexippus) are suffering from declining populations and conservationists have encouraged planting milkweed gardens in urban and suburban landscapes to help offset habitat loss across the breeding range. The effectiveness of gardens as a conservation strategy depends on their ability to attract ovipositing adults and the survival of monarch larvae in these gardens. Larvae are susceptible to a variety of predators as well as to parasitism by a tachinid fly (Lespesia archippivora) and a protozoan parasite (Ophryocystis elektroscirrha) which cause lethal or sublethal effects, yet the severity of these risks in gardens …


The Mitochondrial Genome Of The Endemic Brazilian Paradoxial Frog Pseudis Tocantins (Hylidae), Kaleb Pretto Gatto, Jeramiah J. Smith, Luciana Bolsoni Lourenço Oct 2018

The Mitochondrial Genome Of The Endemic Brazilian Paradoxial Frog Pseudis Tocantins (Hylidae), Kaleb Pretto Gatto, Jeramiah J. Smith, Luciana Bolsoni Lourenço

Biology Faculty Publications

In this work, we present for the first time the mitochondrial genome of a paradoxical frog (Pseudis tocantins). This genome is 15.56 kb, excluding the control region, and is similar in gene content to other hylid mitogenomes. Maximum likelihood analysis, using the mitogenomes of several anurans, indicated P. tocantins as closely related to other hylid species.


Life Science Undergraduate Mentors In Ne Stem 4u Significantly Outperform Their Peers In Critical Thinking Skills, Kari L. Nelson, Claudia M. Rauter, Christine E. Cutucache Oct 2018

Life Science Undergraduate Mentors In Ne Stem 4u Significantly Outperform Their Peers In Critical Thinking Skills, Kari L. Nelson, Claudia M. Rauter, Christine E. Cutucache

Biology Faculty Publications

The development of critical thinking skills in recent college graduates is keenly requested by employers year after year. Moreover, improving these skills can help students to better question and analyze data. Consequently, we aimed to implement a training program that would add to the critical thinking skills of undergraduate students: Nebraska Science, Technology, Engineering, and Math 4U (NE STEM 4U). In this program, undergraduates provide outreach, mentoring, and science, technology, engineering, and mathematics (STEM) education to K–8 students. To determine the impacts of serving as an undergraduate mentor in this program on critical thinking, we compared undergraduate mentors (intervention group) …


Review Of The Family Rivulidae (Cyprinodontiformes, Aplocheiloidei) And A Molecular And Morphological Phylogeny Of The Annual Fish Genus Austrolebias Costa 1998, Marcelo Loureiro, Rafael O. De Sá, Sebastián W. Serra, Felipe Alonso, Luis Esteban Krause Lanés, Matheus Vieira Volcan, Pablo Calviño, Dalton Nielsen, Alejandro Duarte, Graciela Garcia Oct 2018

Review Of The Family Rivulidae (Cyprinodontiformes, Aplocheiloidei) And A Molecular And Morphological Phylogeny Of The Annual Fish Genus Austrolebias Costa 1998, Marcelo Loureiro, Rafael O. De Sá, Sebastián W. Serra, Felipe Alonso, Luis Esteban Krause Lanés, Matheus Vieira Volcan, Pablo Calviño, Dalton Nielsen, Alejandro Duarte, Graciela Garcia

Biology Faculty Publications

The family Rivulidae is the fourth most diverse clade of Neotropical fishes. Together with some genera of the related African family Nothobranchiidae, many rivulids exhibit a characteristic annual life cycle, with diapausing eggs and delayed embryonic development, which allows them to survive in the challenging seasonal ponds that they inhabit. Rivulidae also includes two species known as the only the self-fertilizing vertebrates and some species with internal fertilization. The first goal of this article is to review the systematics of the family considering phylogenetic relationships and synapomorphies of subfamilial clades, thus unifying information that is dispersed throughout the literature. From …


High-Resolution Identification Of Multiple Salmonella Serovars In A Single Sample By Using Crispr-Seroseq, Cameron P. Thompson, Alexandra N. Doak, Naufa Amirani, Erin A. Schroeder, Justin Wright, Subhashinie Kariyawasam, Regina Lamendella, Nikki Shariat Oct 2018

High-Resolution Identification Of Multiple Salmonella Serovars In A Single Sample By Using Crispr-Seroseq, Cameron P. Thompson, Alexandra N. Doak, Naufa Amirani, Erin A. Schroeder, Justin Wright, Subhashinie Kariyawasam, Regina Lamendella, Nikki Shariat

Biology Faculty Publications

Salmonella enterica is represented by >2,600 serovars that can differ in routes of transmission, host colonization, and in resistance to antimicrobials. S. enterica is the leading bacterial cause of foodborne illness in the United States, with well-established detection methodology. Current surveillance protocols rely on the characterization of a few colonies to represent an entire sample; thus, minority serovars remain undetected. Salmonella contains two CRISPR loci, CRISPR1 and CRISPR2, and the spacer contents of these can be considered serovar specific. We exploited this property to develop an amplicon-based and multiplexed sequencing approach, CRISPR-SeroSeq (serotyping by sequencing of the CRISPR loci), to …


Dispersal In Host–Parasitoid Interactions: Crop Colonization By Pests And Specialist Enemies, Edward W. Evans Oct 2018

Dispersal In Host–Parasitoid Interactions: Crop Colonization By Pests And Specialist Enemies, Edward W. Evans

Biology Faculty Publications

Interactions of insect pests and their natural enemies increasingly are being considered from a metapopulation perspective, with focus on movements of individuals among habitat patches (e.g., individual crop fields). Biological control may be undercut in short-lived crops as natural enemies lag behind the pests in colonizing newly created habitat. This hypothesis was tested by assessing parasitism of cereal leaf beetle (Oulema melanopus) and alfalfa weevil (Hypera postica) larvae at varying distances along transects into newly planted fields of small grains and alfalfa in northern Utah. The rate of parasitism of cereal leaf beetles and alfalfa weevils …


Decadal Effects Of Thinning On Understory Light Environments And Plant Community Structure In A Subtropical Forest, Ho-Chen Tsai, Jyh-Min Chiang, Ryan Mcewan, Teng-Chiu Lin Oct 2018

Decadal Effects Of Thinning On Understory Light Environments And Plant Community Structure In A Subtropical Forest, Ho-Chen Tsai, Jyh-Min Chiang, Ryan Mcewan, Teng-Chiu Lin

Biology Faculty Publications

Canopy-opening disturbance such as thinning has immediate and substantive effects on understory microclimate and therefore the establishment and growth of understory plants. A large number of studies have reported the effects of thinning on tree growth, but few studies have examined long-term effects of thinning on understory light environments and species and functional diversity of understory plants. Even less is known whether the change in understory plant community structure observed following canopy disturbance is short-lived and would diminish as the canopy closes or a long lasting due to legacy effects. We examined the effects of an experimental removal of 25% …


Using Transcriptomics To Enable A Plethodontid Salamander (Bolitoglossa Ramosi) For Limb Regeneration Research, Claudia M. Arenas Gómez, Ryan M. Woodcock, Jeramiah J. Smith, Randal S. Voss, Jean Paul Delgado Sep 2018

Using Transcriptomics To Enable A Plethodontid Salamander (Bolitoglossa Ramosi) For Limb Regeneration Research, Claudia M. Arenas Gómez, Ryan M. Woodcock, Jeramiah J. Smith, Randal S. Voss, Jean Paul Delgado

Biology Faculty Publications

Background: Tissue regeneration is widely distributed across the tree of life. Among vertebrates, salamanders possess an exceptional ability to regenerate amputated limbs and other complex structures. Thus far, molecular insights about limb regeneration have come from a relatively limited number of species from two closely related salamander families. To gain a broader perspective on the molecular basis of limb regeneration and enhance the molecular toolkit of an emerging plethodontid salamander (Bolitoglossa ramosi), we used RNA-Seq to generate a de novo reference transcriptome and identify differentially expressed genes during limb regeneration.

Results: Using paired-end Illumina sequencing technology and Trinity …


Evolution Of Nuchal Glands, Unusual Defensive Organs Of Asian Natricine Snakes (Serpentes: Colubridae), Inferred From A Molecular Phylogeny, Hirohiko Takeuchi, Alan H. Savitzky, Li Ding, Anslem De Silva, Indraneil Das, Tao Thien Nguyen, Tein-Shun Tsai, Teppei Jono, Guang-Xiang Zhu, Dharshani Mahaulpatha, Yezhong Tang, Akira Mori Sep 2018

Evolution Of Nuchal Glands, Unusual Defensive Organs Of Asian Natricine Snakes (Serpentes: Colubridae), Inferred From A Molecular Phylogeny, Hirohiko Takeuchi, Alan H. Savitzky, Li Ding, Anslem De Silva, Indraneil Das, Tao Thien Nguyen, Tein-Shun Tsai, Teppei Jono, Guang-Xiang Zhu, Dharshani Mahaulpatha, Yezhong Tang, Akira Mori

Biology Faculty Publications

A large body of evidence indicates that evolutionary innovations of novel organs have facilitated the subsequent diversification of species. Investigation of the evolutionary history of such organs should provide important clues for understanding the basis for species diversification. An Asian natricine snake, Rhabdophis tigrinus, possesses a series of unusual organs, called nuchal glands, which contain cardiotonic steroid toxins known as bufadienolides. Rhabdophis tigrinus sequesters bufadienolides from its toad prey and stores them in the nuchal glands as a defensive mechanism. Among more than 3,500 species of snakes, only 17 Asian natricine species are known to possess nuchal glands or …


Physiological Changes As A Measure Of Crustacean Welfare Under Different Standardized Stunning Techniques: Cooling And Electroshock, Kristin Weineck, Andrew J. Ray, Leo J. Fleckenstein, Meagan Medley, Nicole Dzubuk, Elena Piana, Robin L. Cooper Sep 2018

Physiological Changes As A Measure Of Crustacean Welfare Under Different Standardized Stunning Techniques: Cooling And Electroshock, Kristin Weineck, Andrew J. Ray, Leo J. Fleckenstein, Meagan Medley, Nicole Dzubuk, Elena Piana, Robin L. Cooper

Biology Faculty Publications

Stunning of edible crustaceans to reduce sensory perception prior and during slaughter is an important topic in animal welfare. The purpose of this project was to determine how neural circuits were affected during stunning by examining the physiological function of neural circuits. The central nervous system circuit to a cardiac or skeletal muscle response was examined. Three commercially important crustacean species were utilized for stunning by immersion in an ice slurry below 4 °C and by electrocution; both practices are used in the seafood industry. The blue crab (Callinectes sapidus), the red swamp crayfish (Procambarus clarkii), …


Environment And Past Land Use Together Predict Functional Diversity In A Temperate Forest, Meghna Krishnadas, Noelle G. Beckman, Jaun Carlos Peñagos Zuluaga, Yan Zhu, James Whitacre, John W. Wenzel, Simon A. Queenborough, Lize S. Comita Sep 2018

Environment And Past Land Use Together Predict Functional Diversity In A Temperate Forest, Meghna Krishnadas, Noelle G. Beckman, Jaun Carlos Peñagos Zuluaga, Yan Zhu, James Whitacre, John W. Wenzel, Simon A. Queenborough, Lize S. Comita

Biology Faculty Publications

Environment and human land use both shape forest composition. Abiotic conditions sift tree species from a regional pool via functional traits that influence species’ suitability to the local environment. In addition, human land use can modify species distributions and change functional diversity of forests. However, it is unclear how environment and land use simultaneously shape functional diversity of tree communities. Land-use legacies are especially prominent in temperate forest landscapes that have been extensively modified by humans in the last few centuries. Across a 900-ha temperate deciduous forest in the northeastern United States, comprising a mosaic of different-aged stands due to …


An Investigation Into Tetrodotoxin (Ttx) Levels Associated With The Red Dorsal Spots In Eastern Newt (Notophthalmus Viridescens) Efts And Adults, Mackenzie M. Spicer, James P. Strange, Trevor L. Chapman, Edmund D. Brodie Jr., Edmund D. Brodie Jr., Brian G. Gall Sep 2018

An Investigation Into Tetrodotoxin (Ttx) Levels Associated With The Red Dorsal Spots In Eastern Newt (Notophthalmus Viridescens) Efts And Adults, Mackenzie M. Spicer, James P. Strange, Trevor L. Chapman, Edmund D. Brodie Jr., Edmund D. Brodie Jr., Brian G. Gall

Biology Faculty Publications

We investigated the concentration of tetrodotoxin (TTX) in sections of skin containing and lacking red dorsal spots in both Eastern newt (Notophthalmus viridescens) efts and adults. Several other species, such as Pleurodeles waltl and Echinotriton andersoni, have granular glands concentrated in brightly pigmented regions on the dorsum, and thus we hypothesized that the red dorsal spots of Eastern newts may also possess higher levels of TTX than the surrounding skin. We found no difference between the concentrations of TTX in the red spots as compared to neighboring skin lacking these spots in either efts or adults. However, …


Structural Basis For Light Control Of Cell Development Revealed By Crystal Structures Of A Myxobacterial Phytochrome, Nicole C. Woitowich, Andrei S. Halavaty, Patricia Waltz, Christopher Kupitz, Joseph Valera, Gregory Tracy, Kevin D. Gallagher, Elin Claesson, Takanori Nakane, Suraj Pandey, Garrett Nelson, Rie Tanaka, Eriko Nango, Eiichi Mizohata, Shigeki Owada, Kensure Tono, Yasumasa Joti, Angela C. Nugent, Hardik Patel, Ayesha Mapara, James Hopkins, Phu Duong, Dorina Bizhga, Svetlana E. Kovaleva, Rachel St. Peter, Cynthia N. Hernandez, Wesley B. Ozarowski, Shatabdi Roy-Chowdhuri, Jay-How Yang, Petra Edlund, Heikki Takala, Janne Ihalainen, Jennifer Brayshaw, Tyler Norwood, Ishwor Poudyal, Petra Fromme, John C.H. Spence, Keith Moffat, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojkovic Sep 2018

Structural Basis For Light Control Of Cell Development Revealed By Crystal Structures Of A Myxobacterial Phytochrome, Nicole C. Woitowich, Andrei S. Halavaty, Patricia Waltz, Christopher Kupitz, Joseph Valera, Gregory Tracy, Kevin D. Gallagher, Elin Claesson, Takanori Nakane, Suraj Pandey, Garrett Nelson, Rie Tanaka, Eriko Nango, Eiichi Mizohata, Shigeki Owada, Kensure Tono, Yasumasa Joti, Angela C. Nugent, Hardik Patel, Ayesha Mapara, James Hopkins, Phu Duong, Dorina Bizhga, Svetlana E. Kovaleva, Rachel St. Peter, Cynthia N. Hernandez, Wesley B. Ozarowski, Shatabdi Roy-Chowdhuri, Jay-How Yang, Petra Edlund, Heikki Takala, Janne Ihalainen, Jennifer Brayshaw, Tyler Norwood, Ishwor Poudyal, Petra Fromme, John C.H. Spence, Keith Moffat, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojkovic

Biology Faculty Publications

Phytochromes are red-light photoreceptors that were first characterized in plants, with homologs in photosynthetic and non-photosynthetic bacteria known as bacteriophytochromes (BphPs). Upon absorption of light, BphPs interconvert between two states denoted Pr and Pfr with distinct absorption spectra in the red and far-red. They have recently been engineered as enzymatic photoswitches for fluorescent-marker applications in non-invasive tissue imaging of mammals. This article presents cryo- and room-temperature crystal structures of the unusual phytochrome from the non-photosynthetic myxobacterium Stigmatella aurantiaca (SaBphP1) and reveals its role in the fruitingbody formation of this photomorphogenic bacterium. SaBphP1 lacks a conserved histidine (His) in the chromophore-binding …


Nurudea Zhengii Ren, A New Species Of The Rhus Gall Aphids (Aphididae: Eriosomatinae: Fordini) From Eastern China, Zhu-Mei Ren, Xu Su, Carol D. Von Dohlen, Jun Wen Aug 2018

Nurudea Zhengii Ren, A New Species Of The Rhus Gall Aphids (Aphididae: Eriosomatinae: Fordini) From Eastern China, Zhu-Mei Ren, Xu Su, Carol D. Von Dohlen, Jun Wen

Biology Faculty Publications

A new Rhus gall aphid species Nurudea zhengii Ren, sp. nov. collected from the Mountain Qixing in Shangrao County, Jiangxi Province, China is described and illustrated from alate viviparous female. The new species differs from the other Nurudea species in the length and proportion of antennal segments, the structure of antennal secondary sensilla, and the flower-like shape of the galls that are formed on its primary host. Its primary host plant is Rhus hypoleuca, whereas other Nurudea species are on R. chinensis.


Interferon Priming Is Essential For Human Cd34+ Cell-Derived Plasmacytoid Dendritic Cell Maturation And Function, A. Lausten, R. O. Bak, C. Krapp, L. Kjær, J. H. Egedahl, C. C. Petersen, S. Pillai, H. Q. Tang, N. Uldbjerg, M. Porteus, N. R. Roan, M. Nyegaard, Paul W. Denton, M. R. Jakobsen Aug 2018

Interferon Priming Is Essential For Human Cd34+ Cell-Derived Plasmacytoid Dendritic Cell Maturation And Function, A. Lausten, R. O. Bak, C. Krapp, L. Kjær, J. H. Egedahl, C. C. Petersen, S. Pillai, H. Q. Tang, N. Uldbjerg, M. Porteus, N. R. Roan, M. Nyegaard, Paul W. Denton, M. R. Jakobsen

Biology Faculty Publications

Plasmacytoid dendritic cells (pDC) are essential for immune competence. Here we show that pDC precursor differentiated from human CD34+ hematopoietic stem and progenitor cells (HSPC) has low surface expression of pDC markers, and has limited induction of type I interferon (IFN) and IL-6 upon TLR7 and TLR9 agonists treatment; by contrast, cGAS or RIG-I agonists-mediated activation is not altered. Importantly, after priming with type I and II IFN, these precursor pDCs attain a phenotype and functional activity similar to that of peripheral blood-derived pDCs. Data from CRISPR/Cas9-mediated genome editing of HSPCs further show that HSPC-pDCs with genetic modifications can be …


Plasmonic-Ceria Nanoparticles As Fluorescence Intensity And Lifetime Quenching Optical Sensor, Nader Shehata, Effat Samir, Ishac Kandas Aug 2018

Plasmonic-Ceria Nanoparticles As Fluorescence Intensity And Lifetime Quenching Optical Sensor, Nader Shehata, Effat Samir, Ishac Kandas

Biology Faculty Publications

Ceria nanoparticles have been recently used as an optical fluorescent material with visible emission under ultraviolet excitation, due to the formation of trivalent cerium ions with corresponding oxygen vacancies. This paper introduces the enhancement of both fluorescence emission and lifetime through adding gold nanoparticles. The reason is due to possible coupling between the plasmonic resonance of gold nanoparticles and the fluorescence emission of ceria that has been achieved, along with enhanced formation of trivalent cerium ions. Both factors lead to higher fluorescence intensity peaks and shorter fluorescence lifetimes. As an application, gold-ceria nanoparticles have been used as an optical sensing …


Multiple Facets Of Biodiversity Drive The Diversity-Stability Relationship, Dylan Craven, Nico Eisenhauer, William D. Pearse, Yann Hautier, Christiane Roscher, Forest Isbell, Michael Bahn, Carl Beierkuhnlein, Gerhard Bönisch, Nina Buchmann, Chaeho Byun, Jane A. Catford, Bruno E.L. Cerabolini, J. Hans C. Cornelissen, Joseph M. Craine, Enrica De Luca, Anne Ebeling, John N. Griffin, Andy Hector, Jes Hines, Anke Jentsch, Jens Kattge, Jürgen Kreyling, Vojtech Lanta, Nathan Lemoine, Sebastian T. Meyer, Vanessa Minden, Vladimir Onipchenko, H. Wayne Polley, Peter B. Reich, Jasper Van Ruijven, Brandon Schamp, Melinda D. Smith, Nadejda A. Soudzilovskaia, David Tilman, Alexandra Weigelt, Brian Wilsey, Peter Manning Aug 2018

Multiple Facets Of Biodiversity Drive The Diversity-Stability Relationship, Dylan Craven, Nico Eisenhauer, William D. Pearse, Yann Hautier, Christiane Roscher, Forest Isbell, Michael Bahn, Carl Beierkuhnlein, Gerhard Bönisch, Nina Buchmann, Chaeho Byun, Jane A. Catford, Bruno E.L. Cerabolini, J. Hans C. Cornelissen, Joseph M. Craine, Enrica De Luca, Anne Ebeling, John N. Griffin, Andy Hector, Jes Hines, Anke Jentsch, Jens Kattge, Jürgen Kreyling, Vojtech Lanta, Nathan Lemoine, Sebastian T. Meyer, Vanessa Minden, Vladimir Onipchenko, H. Wayne Polley, Peter B. Reich, Jasper Van Ruijven, Brandon Schamp, Melinda D. Smith, Nadejda A. Soudzilovskaia, David Tilman, Alexandra Weigelt, Brian Wilsey, Peter Manning

Biology Faculty Publications

A significant body of evidence has demonstrated that biodiversity stabilizes ecosystem functioning over time in grassland ecosystems. However, the relative importance of different facets of biodiversity underlying the diversity–stability relationship remains unclear. Here we used data from 39 biodiversity experiments and structural equation modeling to investigate the roles of species richness, phylogenetic diversity, and both the diversity and community-weighted mean of functional traits representing the ‘fast–slow’ leaf economics spectrum in driving the diversity–stability relationship. We found that high species richness and phylogenetic diversity stabilize biomass production via enhanced asynchrony. Contrary to our hypothesis, low phylogenetic diversity also enhances ecosystem stability …


Mobile Elements Shape Plastome Evolution In Ferns, Tanner A. Robison, Amanda L. Grusz, Paul G. Wolf, Jeffrey P. Mower, Blake D. Fauskee, Karla Sosa, Eric Schuettpelz Aug 2018

Mobile Elements Shape Plastome Evolution In Ferns, Tanner A. Robison, Amanda L. Grusz, Paul G. Wolf, Jeffrey P. Mower, Blake D. Fauskee, Karla Sosa, Eric Schuettpelz

Biology Faculty Publications

Plastid genomes display remarkable organizational stability over evolutionary time. From green algae to angiosperms, most plastid genomes are largely collinear, with only a few cases of inversion, gene loss, or, in extremely rare cases, gene addition. These plastome insertions are mostly clade-specific and are typically of nuclear or mitochondrial origin. Here, we expand on these findings and present the first family-level survey of plastome evolution in ferns, revealing a novel suite of dynamic mobile elements. Comparative plastome analyses of the Pteridaceae expose several mobile open reading frames that vary in sequence length, insertion site, and configuration among sampled taxa. Even …


Repeatability And Reliability Of Exploratory Behavior In Proactive And Reactive Zebrafsh, Danio Rerio, Matthew R. Baker, Alexander C. Goodman, Jonathan B. Santo, Ryan Y. Wong Aug 2018

Repeatability And Reliability Of Exploratory Behavior In Proactive And Reactive Zebrafsh, Danio Rerio, Matthew R. Baker, Alexander C. Goodman, Jonathan B. Santo, Ryan Y. Wong

Biology Faculty Publications

Behavioral responses to novel situations often vary and can belong to a suite of correlated behaviors. Characteristic behaviors of different personality types (e.g. stress coping styles) are generally consistent across contexts and time. Here, we compare the repeatability and reliability of exploratory behaviors between zebrafsh strains selectively bred to display contrasting behavioral responses to stressors that represent the proactive-reactive axis. Specifically, we measure exploratory behavior of individual fish in an open field test over five weeks. We quantified the stationary time, average swimming speed and time spent by a fish in the center area. We found a number of strain …


Why Large Seeds With Physical Dormancy Become Nondormant Earlier Than Small Ones, Ailton G. Rodrigues-Junior, Ana Caroline M. P. Mello, Carol C. Baskin, Jerry M. Baskin, Denise M. T. Oliveira, Queila S. Garcia Aug 2018

Why Large Seeds With Physical Dormancy Become Nondormant Earlier Than Small Ones, Ailton G. Rodrigues-Junior, Ana Caroline M. P. Mello, Carol C. Baskin, Jerry M. Baskin, Denise M. T. Oliveira, Queila S. Garcia

Biology Faculty Publications

Under natural conditions, large seeds with physical dormancy (PY) may become water permeable earlier than small ones. However, the mechanism for this difference has not been elucidated. Thus, our aim was to evaluate the traits associated with PY in seeds of Senna multijuga (Fabaceae) and to propose a mechanism for earlier dormancy-break in large than in small seeds. Two seedlots were collected and each separated into large and small seeds. Seed dry mass, water content, thickness of palisade layer in the hilar and distal regions and the ratio between palisade layer thickness (P) in the lens fissure and seed mass …


First Record Of The Genus Leptodactylus (Anura: Leptodactylidae) In Cuba: Leptodactylus Fragilis, A Biological Invasion?, Tomás M. Rodríguez-Cabrera, L. Yusnaviel García-Padrón, Andrés R. Acosta Galvis, Rafael O. De Sá, Roberto Alonso Bosch Aug 2018

First Record Of The Genus Leptodactylus (Anura: Leptodactylidae) In Cuba: Leptodactylus Fragilis, A Biological Invasion?, Tomás M. Rodríguez-Cabrera, L. Yusnaviel García-Padrón, Andrés R. Acosta Galvis, Rafael O. De Sá, Roberto Alonso Bosch

Biology Faculty Publications

The Neotropical genus Leptodactylus is currently represented by three species in the West Indies (Leptodactylus albilabris, Leptodactylus fallax and Leptodactylus validus). Based on morphological, acoustic and molecular evidence, we document the presence of a fourth species in the Caribbean region, Leptodactylus fragilis (Brocchi, 1877). The species was found at two localities in western Cuba, and molecular data suggest a northern South American origin, possibly Venezuela, for these populations. We discuss the potential invasive status of L. fragilis, based on its known distribution, relative abundance, behaviour and possible impacts on native species of Cuban amphibians.


Fungal Endophyte Alternaria Tenuissima Can Affect Growth And Selenium Accumulation In Its Hyperaccumulator Host Astragalus Bisulcatus, Stormy D. Lindblom, Ami L. Wangeline, Jose R. Valdez Barillas, Berthal Devilbiss, Sirine C. Fakra, Elizabeth A. H. Pilon-Smits Aug 2018

Fungal Endophyte Alternaria Tenuissima Can Affect Growth And Selenium Accumulation In Its Hyperaccumulator Host Astragalus Bisulcatus, Stormy D. Lindblom, Ami L. Wangeline, Jose R. Valdez Barillas, Berthal Devilbiss, Sirine C. Fakra, Elizabeth A. H. Pilon-Smits

Biology Faculty Publications

Endophytes can enhance plant stress tolerance by promoting growth and affecting elemental accumulation, which may be useful in phytoremediation. In earlier studies, up to 35% elemental selenium (Se0 ) was found in Se hyperaccumulator Astragalus bisulcatus. Since Se0 can be produced by microbes, the plant Se0 was hypothesized to be microbe-derived. Here we characterize a fungal endophyte of A. bisulcatus named A2. It is common in seeds from natural seleniferous habitat containing 1,000– 10,000 mg kg-1 Se. We identified A2 as Alternaria tenuissima via 18S rRNA sequence analysis and morphological characterization. X-ray microprobe analysis of A. …