Life Sciences Commons^™

Effects Of Olfactory And Visual Predators On Nest Success And Nest-Site Selection Of Waterfowl In North Dakota, Jennifer Borgo

Green Canyon Environmental Research Area, Logan Utah

No abstract provided.

Sex-Biased Predation On Taricha By A Novel Predator In Annadel State Park, Amber Noelle Brouillette

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Newts of the genus Taricha have long been studied due to the powerful neurotoxin found in their skin. Tetrodotoxin (TTX) acts by blocking receptors in sodium channels, ultimately resulting in death via asphyxiation. The only documented predators of species in this genus have been snakes of the genus Thamnophis. Recently, predation on Taricha in Ledson Marsh in Annadel State Park, Santa Rosa, CA was discovered. Predation was in the form of laceration or evisceration, and tracking of predation from 1998-2008 showed that it was male-biased. Two species of Taricha were found living sympatrically at this location, the California newt …

Predator-Prey Relationships And Spatial Ecology Of Jaguars In The Southern Pantanal, Brazil: Implications For Conservation And Management, Sandra Maria Cintra Cavalcanti

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Pantanal wetland of Brazil is an important area for the conservation of jaguars (Panthera onca) and a stronghold for the species. Although our knowledge of jaguar ecology has increased since the first field studies in the mid 1980’s, a detailed study of this cryptic species remains challenging. In the following chapters, we investigated the ecology of jaguars in the southern Pantanal of Brazil. In Chapter II, we examined the foraging ecology of jaguars, documenting predation rates, patterns, and species killed. We found individual jaguars differed in the selection of their prey. There were differences in the proportion …

Estimating Total Phosphorus And Total Suspended Solids Loads From High Frequency Data, Amber Spackman Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Frequently measured turbidity was examined as a surrogate for total phosphorus (TP) and total suspended solids (TSS) loads at two locations in the Little Bear River, Utah, USA. Using regression techniques, equations were developed for TP and TSS as functions of turbidity. The equations accounted for censored data, and additional explanatory variables to represent hydrological conditions were considered for inclusion in the equations. By using the resulting surrogate relationships with high frequency turbidity measurements, high frequency estimates of TP and TSS concentrations were calculated. To examine the effect of sampling frequency, reference loads were determined from the concentration records for …

Phenotypic Plasticity And The Post-Modern Synthesis: Integrating Evo-Devo And Quantitative Genetics In Theoretical And Empirical Studies, Alison G. Scoville

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mainstream evolutionary biology lacks a mature theory of phenotype. Following from the Modern Synthesis, researchers tend to assume an unrealistically simple mapping of genotype to phenotype, or else trust that the complexities of developmental architecture can be adequately captured by measuring trait variances and covariances. In contrast, the growing field of evolutionary developmental biology (evo-devo) explicitly examines the relationship between developmental architecture and evolutionary change, but lacks a rigorous quantitative and predictive framework. In my dissertation, I strive to integrate quantitative genetics and evo-devo, using both theoretical and empirical studies of plasticity. My first paper explores the effect of realistic …

Evolutionary Genetics Of Tetrodotoxin (Ttx) Resistance In Snakes: Tracking A Feeding Adaptation From Populations Through Clades, Chris R. Feldman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding the nature of adaptive evolution has been the recent focus of research detailing the genetic basis of adaptation and theoretical work describing the mechanics of adaptive evolution. Nevertheless, key questions regarding the process of adaptive evolution remain. Ultimately, a detailed description of the ecological context, evolutionary history, and genetic basis of adaptations is required to advance our understanding of adaptive evolution. To address some of the contemporary issues surrounding adaptive evolution, I examine phenotypic and genotypic changes in a snake feeding adaptation.

Adaptations can arise through fixation of novel mutations or recruitment of existing variation. Some populations of the …

Garter Snake (Thamnophis) Natural History: Food Habits And Interspecific Aggression, Michael J. Edgehouse

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Communication and recognition are closely intertwined and have been well documented in closely related species over the past several decades. These two types of behaviors often will aid in fostering or disrupting coexistence of similar species. Frequently, it is through different diet patterns that similar species will be able to coexist. This study uses data from 1972 through 2006 to demonstrate the diet of Thamnophis sirtalis, T. atratus, T. elegans, and T. couchii throughout their California range of sympatry with Taricha torosa. Additionally, an in depth examination of the diet of T. sirtalis, T. elegans, …

Ethylene Synthesis And Sensitivity In Crop Plants, Joseph F. Romagnano

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The gaseous plant hormone ethylene is a small molecule that regulates developmental change. Research was conducted in three areas: sensitivity, synthesis, and alterations to synthesis. Vegetative pea plants were more sensitive than radish plants to atmospheric ethylene. Light intensity did not affect ethylene sensitivity. Ethylene synthesis rates were measured for unstressed cotton, corn, soybean, and tomato plants. The per-plant ethylene synthesis rate ranged from 0.1-80 pmol plant^-1 s^-1. However, when normalized to net photosynthetic rate, this range was 1-4 µmol of ethylene synthesis per mol of CO₂ uptake. Diurnal cycles in ethylene synthesis were present in …

Disturbance As Restoration In The Intermountain Sagebrush Steppe: Effects On Non Target Bird Species, Russell Edward Norvell

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Changes in shrubsteppe passerine bird habitat associations in response to disturbance were investigated at multiple temporal and spatial scales. Spatial measures incorporated the effects of area at different ecological scales (nest site, territory, and landscape) to include ecologically meaningful extents. Temporal measures included seasonal and annual effects, and were designed to detect lagged responses should they occur. Local-to-landscape scale effects of mechanical restoration treatments on local extirpation and abundances of nine species indicated most were insensitive to changes in habitat quality, while abundance models showed only broad declines. Changing the availability of nesting habitat on both the attractiveness and quality …

Diets Of Ladybird Beetles (Coleoptera: Coccinellidae) In Utah Alfalfa Fields, Lynette Nicole Davidson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Aphidophagous lady beetles rely on multiple sources of food in their environment. Alfalfa fields provide both aphids and many alternate foods, such as other arthropod prey, pollen, and fungi. Alfalfa fields (Medicago sativa L.) in Utah have low aphid densities, which may require lady beetles to consume alternative sources of food. Many methods can be used to determine these diets; frass analysis is used here to compare the diets of the introduced species Coccinella septempunctata L. with two native species, C. transversoguttata richardsoni Brown and Hippodamia convergens Guérin-Méneville, that occur in the Utah alfalfa habitat.

In initial laboratory experiments …

Combining Environmental History And Soil Phytolith Analysis At The City Of Rocks National Reserve: Developing New Methods In Historical Ecology, Lesley Morris

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Historical ecology is an emerging and interdisciplinary field that seeks to explain the changes in ecosystems over time through a synthesis of information derived from human records and biological data. The methods in historical ecology cover a wide range of temporal and spatial scales. However, methods for the more recent past (about 200 years) are largely limited to the human archive and dendrochronological evidence which can be subject to human bias, limited in spatial extent or not appropriate for non-forested systems. There is a need to explore new methods by which biological data can be used to understand historic vegetation …

Mountain Pine Beetle Fecundity And Offspring Size Differ Among Lodgepole Pine And Whitebark Pine Hosts, Donovan Gross

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Whitebark pine (Pinus albicaulis Engelmann) is a treeline species in the central Rocky Mountains. Its occupation of high elevations previously protected whitebark pine from long-term mountain pine beetle outbreaks. The mountain pine beetle, however, is currently reaching outbreaks of record magnitude in high-elevation whitebark pine. We used a factorial laboratory experiment to compare mountain pine beetle (Dendroctonus ponderosae Hopkins) life history characteristics between a typical host, lodgepole pine (Pinus contorta Engelmann), and whitebark pine. We tested the effects of natal host and brood host on beetle fecundity, offspring size, and brood sex-ratio. We reared mountain pine beetles …

The Genetics Of Colonization In Two Amphibian Species After The 1980 Eruption Of Mount St. Helens, Kristin Ann Bakkegard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The genetics of colonization is understudied in salamanders but has large conservation implications as new habitats are formed or restored to their previous condition. The 1980 eruption of Mount St. Helens provided a natural experiment to study the genetic effects of a large infrequent environmental disturbance on two species of salamander, Taricha granulosa (Rough-skinned newt) and Ambystoma gracile (Northwestern salamander). Both these species breed in ponds, and are thought to exhibit high breeding site fidelity and low vagility. I designated three treatments based on the effects of the eruption: new ponds (created by the eruption, immigrants only), recovery lakes (in …

Reproductive Tactics Of Aphidophagous Lady Beetles: Comparison Of A Native Species And An Invasive Species That Is Displacing It, Yukie Kajita

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Coccinella septempunctata L. (Coleoptera: Coccinellidae) has been introduced to North America in recent decades, raising concerns of adverse impacts on native lady beetles, including the congeneric C. transversoguttata richardsoni (Brown). The central focus of my dissertation is to understand the importance of reproduction, in particular, in promoting invasion of C. septempunctata and its replacement of native lady beetles in alfalfa fields of western North America.

Studies were conducted to compare reproductive tactics of the invasive C. septempunctata and the native C. transversoguttata, by addressing: 1) maximum rate of reproduction of overwintered lady beetles, 2) population dynamics of the invasive …

A Conceptual Framework For Understanding Effects Of Wildlife Water Developments In The Western United States, Randy T. Larsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Free water can be a limiting factor to wildlife in arid regions of the world. In the western United States, management agencies have installed numerous, expensive wildlife water developments (e.g. catchments, guzzlers, wells) to: 1) increase the distribution or density of target species, 2) influence animal movements, and 3) mitigate for the loss of available free water. Despite over 50 years as an active management practice, water developments have become controversial for several species. We lack an integrated understanding of the ways free water influences animal populations. In particular, we have not meshed understanding of evolutionary adaptations that reduce the …

Distinct Contributions Of Model Masp1 And Masp2 Like Peptides To The Mechanical Properties Of Synthetic Major Ampullate Silk Fibers As Revealed In Silico, Amanda E. Brooks, Shane R. Nelson, Justin A. Jones, Courtney Koenig, Michael Hinman, Michael Hinman, Shane Stricker, Randolph V. Lewis

Biology Faculty Publications

All characterized major ampullate silks from orb-web weaving spiders are composites of primarily two different proteins: MaSp1 and MaSp2. The conserved association of MaSp1 and MaSp2 in these spider species, the highly conserved amino acid motifs, and variable ratios of MaSp1 to MaSp2 demonstrate the importance of both MaSp1 and MaSp2 to the strength and elasticity of the fiber. Computer simulated mechanical tests predicted differing roles for MaSp1 and MaSp2 in the mechanical properties of the fibers. Recombinant MaSp1 and MaSp2 proteins were blended and spun into fibers mimicking the computer-simulated conditions. Mechanical testing verified the differing roles of MaSp1 …

Reproductive Biology Of The Coyote (Canis Latrans): Integration Of Behavior And Physiology, Debra Anne Carlson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wild Canis species possess a unique suite of reproductive traits including social monogamy, copulatory lock/tie, and biparental care. Females are seasonally monestrous and experience an obligatory pseudopregnancy after spontaneous ovulation. While these characteristics have been ascribed to coyotes, an integrated profile of behavior and physiology has not yet been described. In this study, temporal correlations between steroid hormone levels and socio-sexual mating behaviors were documented, as were changes in vaginal epithelium. Pseudopregnancy was compared to pregnancy by contrasting hormone (progesterone, estradiol, prolactin and relaxin) profiles of unmated females to patterns obtained in alternate years when they bred. Meanwhile, social interactions …

An Investigation Of The Early Life-History Of Brown Trout (Salmo Trutta) And Potential Influences On Invasion Success In The Logan River, Utah, Jeremiah Wood

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to the significant threats posed by nonnative fish species worldwide, it is important to understand how life-history strategies of individual species interact with environmental conditions to explain the success or failure of nonnative fish invasions. Brown trout are prolific invaders, but often exhibit upstream distributional limits in Intermountain West streams, potentially due to a maladaptive reproductive life-history strategy influenced by hydrologic conditions in high-elevation areas. We used redd counts, egg survival experiments, and temperature modeling to investigate the reproductive life-history strategy of brown trout and its potential for success along an elevational stream gradient. We documented brown trout spawning …

Granivores And Restoration: Implications Of Invasion And Considerations Of Context-Dependent Seed Removal, Steven M. Ostoja

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Granivores are important components of sagebrush communities in western North America. These same regions are being altered by the invasion of the exotic annual Bromus tectorum (cheatgrass) that alters physical and biological dynamics in ways that appear to promote its persistence. This research directly relates to the restoration of B. tectorum-dominated systems in two inter-related ways. First, because these landscapes have large quantities of seeds applied during restoration, it is important to determine the major granivore communities in intact sagebrush communities and in nearby cheatgrass-dominated communities. Second, it is important to develop an understanding of patterns of seed harvest …

Ponderosa Pine Mortality And Bark Beetle-Host Dynamics Following Prescribed And Wildland Fires In The Northern Rocky Mountains, Usa, Ryan Stephen Davis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ponderosa pine delayed mortality, and bark beetle attacks and emergence were monitored on 459 trees for 3 years following one prescribed fire in Idaho and one wildland fire in Montana. Resin flow volume (ml) was measured on 145 fire-injured ponderosa pine 2 and 3 years post-fire. Logistic regression was used to construct two predictive ponderosa pine mortality models, and two predictive bark beetle-attack models. Post-fire delayed tree mortality was greater with the presence of primary bark beetles independent of diameter at breast height (DBH) (cm), and was greater in smaller diameter trees most likely due to direct effects of fire-caused …

Conservation Implications Of Winter-Feeding Policies For Mule Deer In Utah, Chris C. Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Policies regulating wildlife winter-feeding programs may have long-term impacts on conservation and future management of both target and non-target species. In 2000, the Utah Wildlife Board, upon reviewing input from a series of public regional meetings, adopted a Utah Big Game Winter-Feeding Policy. The Utah Division of Wildlife Resources used this policy to regulate winter-feeding programs for mule deer in northern Utah, 2001-2005. I monitored the program effects on mule deer biology, activity and migration, and winter browse utilization and productivity.

While feed rations generally compensated for protein and energy deficiencies, they may overlook mineral deficiencies. To determine if mule …

Are Rivers Just Bigstreams? Using A Pulse Method To Measure Nitrogen Demand In A Large River, J. L. Tank, E. J. Rosi-Marshall, Michelle A. Baker, R. O. Hall Jr.

Biology Faculty Publications

Given recent focus on large rivers as conduits for excess nutrients to coastal zones, their role in processing and retaining nutrients has been overlooked and understudied. Empirical measurements of nutrient uptake in large rivers are lacking, despite a substantial body of knowledge on nutrient transport and removal in smaller streams. Researchers interested in nutrient transport by rivers (discharge >10000 L/s) are left to extrapolate riverine nutrient demand using a modeling framework or a mass balance approach. To begin to fill this knowledge gap, we present data using a pulse method to measure inorganic nitrogen. (N) transport and removal in the …

Chihuahuan Desertkangaroo Rats: Nonlinear Effects Of Population Dynamics, Competition, And Rainfall, M. Lima, S.K. Morgan Ernest, J. H. Brown, A. Belgrano, N. C. Stenseth

Biology Faculty Publications

Using long-term data on two kangaroo rats in the Chihuahuan Desert of North America, we fitted logistic models including the exogenous effects of seasonal rainfall patterns. Our aim was to test the effects of intraspecific interactions and seasonal rainfall in explaining and predicting the numerical fluctuations of these two kangaroo rats. We found that logistic models fit both data sets quite well; Dipodomys merriami showed lower maximum per capita growth rates than Dipodomys ordii, and in both cases logistic models were nonlinear. Summer rainfall appears to be the most important exogenous effect for both rodent populations; models including this variable …

On Estimating The Exponent Of Power-Law Frequency Distributions, Ethan P. White, B. J. Enquist, J. L. Green

Biology Faculty Publications

Power-law frequency distributions characterize a wide array of natural phenomena. In ecology, biology, and many physical and social sciences, the exponents of these power-laws are estimated to draw inference about the processes underlying the phenomenon, to test theoretical models, and to scale up from local observations to global patterns. Therefore, it is essential that these exponents be estimated accurately. Unfortunately, the binning-based methods traditionally utilized in ecology and other disciplines perform quite poorly. Here we discuss more sophisticated methods for fitting these exponents based on cumulative distribution functions and maximum likelihood estimation. We illustrate their superior performance at estimating known …

On The Relationship Between Mass And Diameter Distributions In Tree Communities, J. C. Stegen, Ethan P. White

Biology Faculty Publications

It has been suggested that frequency distributions of individual tree masses in natural stands are characterized by power-law distributions with exponents near -3/4, and that therefore tree communities exhibit energetic equivalence among size classes. Because the mass of trees is not measured directly, but estimated from diameter, this supposition is based on the fact that the observed distribution of tree diameters is approximately characterized by a power-law with an exponent -2. Here we show that diameter distributions of this form are not equivalent to mass distributions with exponents of -3/4, but actually to mass distributions with exponents of -11/8. We …

Zero-Sum, The Niche,And Metacommunities: Long-Term Dynamics Of Community Assembly, S.K. Morgan Ernest, J. H. Brown, K. M. Thibault, Ethan P. White, J. R. Goheen

Biology Faculty Publications

Recent models of community assembly, structure, and dynamics have incorporated, to varying degrees, three mechanistic processes: resource limitation and interspecific competition, niche requirements of species, and exchanges between a local community and a regional species pool. Synthesizing 30 years of data from an intensively studied desert rodent community, we show that all of these processes, separately and in combination, have influenced the structural organization of this community and affected its dynamical response to both natural environmental changes and experimental perturbations. In addition, our analyses suggest that zero-sum constraints, niche differences, and metacommunity processes are inextricably linked in the ways that …

Strong Genetic Differentiation Among Neighboring Populations Of A Locally Endemic Primrose, L. Bjerregaard, Paul G. Wolf

Biology Faculty Publications

Maguire primrose is a locally endemic plant of northern Utah, USA, with a total known range of less than 20 km2. A previous study found evidence for strong differentiation among local populations at 4 allozyme loci. Here we reexamined populations using 165 AFLP loci and found further evidence of unusually strong genetic structure. We also found an apparently fixed nucleotide difference between populations for a noncoding region of chloroplast DNA, mirroring the patterns seen for AFLP loci. Furthermore, we tested the hypothesis that the current population structure is the result of breeding barriers between plants from different populations. We made …

Functional Gene Losses Occur With Minimal Size Reduction In The Plastid Genome Of The Parasitic Liverwort Aneura Mirabilis, N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, B. Goffinet, Paul G. Wolf, C. W. Depamphilis, Jeffrey L. Boore

Biology Faculty Publications

Aneura mirabilis is a parasitic liverwort that exploits an existing mycorrhizal association between a basidiomycete and a host tree. This unusual liverwort is the only known parasitic seedless land plant with a completely nonphotosynthetic life history. The complete plastid genome of A. mirabilis was sequenced to examine the effect of its nonphotosynthetic life history on plastid genome content. Using a partial genomic fosmid library approach, the genome was sequenced and shown to be 108,007 bp with a structure typical of green plant plastids. Comparisons were made with the plastid genome of Marchantia polymorpha, the only other liverwort plastid sequence available. …

Conservation Of Selection On Matk In Ferns Following An Ancient Loss Its Flanking Intron, A. M. Duffy, S. A. Kelchner, Paul G. Wolf

Biology Faculty Publications

The chloroplast gene trnK and its associated group II intron appear to be absent in a large and ancient clade that includes nearly 90% of fern species. However, the maturase protein encoded within the intron (matK) is still present and located on the boundary of a large-scale inversion. We surveyed the chloroplast genome sequence of clade-member Adiantum capillus-veneris for evidence of a still present but fragmented trnK intron. Lack of signature structural domains and sequence motifs in the genome indicate loss of the trnK intron through degradation in an ancestor of the clade. In plants, matK preferentially catalyzes splicing of …