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Full-Text Articles in Life Sciences
Insectdisease: Programmatic Access To The Ecological Database Of The World’S Insect Pathogens, Tad Dallas, Colin J. Carlson, Patrick R. Stephens, Sadie J. Ryan, David W. Onstad
Insectdisease: Programmatic Access To The Ecological Database Of The World’S Insect Pathogens, Tad Dallas, Colin J. Carlson, Patrick R. Stephens, Sadie J. Ryan, David W. Onstad
Faculty Publications
Curated databases of species interactions are instrumental to exploring and understanding the spatial distribution of species and their biotic interactions. In the process of conducting such projects, data development and curation efforts may give rise to a data product with utility beyond the scope of the original work, but which becomes inaccessible over time. Data describing insect host–pathogen interactions are fairly rare, and should thus be preserved and curated with appropriate metadata. Here, we introduce the insectDisease R package, a mechanism for curating, updating and distributing data from the Ecological Database of the World's Insect Pathogens, a database of insect …
Linking Bacterioplankton Community Structures To Environmental State Variables And Phytoplankton Assemblages In Two South Carolina Salt Marsh Estuaries, Wes Johnson, Alan J. Lewitus, Madilyn Fletcher
Linking Bacterioplankton Community Structures To Environmental State Variables And Phytoplankton Assemblages In Two South Carolina Salt Marsh Estuaries, Wes Johnson, Alan J. Lewitus, Madilyn Fletcher
Faculty Publications
Microorganisms are among the most important organisms to the ecology of salt marsh estuaries; however, fundamental questions regarding their distribution, environmental controls, and interactions with phytoplankton remain unanswered. We used denaturing gradient gel electrophoresis (DGGE) of bacterial rRNA genes and high performance liquid chromatography (HPLC) of phytoplankton photopigments to characterize planktonic communities from the Ashepoo, Combahee, and Edisto (ACE) Basin and North Inlet (NI) estuaries on the South Carolina coast, USA. Multivariate comparisons of the planktonic community profiles revealed that the 2 estuaries supported distinct bacterial communities. Furthermore, bacterial communities in both systems were partitioned into separate particle-associated (PA) and …
Variations In Bacterial Community Structure During A Dinoflagellate Bloom Analyzed By Dgge And 16s Rdna Sequencing, Laura B. Fandino, Lasse Riemann, Grieg F. Steward, Richard A. Long, Farooq Azam
Variations In Bacterial Community Structure During A Dinoflagellate Bloom Analyzed By Dgge And 16s Rdna Sequencing, Laura B. Fandino, Lasse Riemann, Grieg F. Steward, Richard A. Long, Farooq Azam
Faculty Publications
The relationship between bacterial 16S rRNA gene composition and carbon metabolism was analyzed during an intense dinoflagellate bloom off the Southern California coast during the spring of 1997. Bacterial numbers and rate processes, chlorophyll a, and the dissolved and particulate organic matter pools were measured during the bloom to provide a framework within which to assess bacterial community composition. Free bacteria were numerically dominant, generally comprising >90% of the total, and were responsible for >70% of bacterial production. Attached bacteria had higher cell-specific growth rates than free bacteria (range = 0.5 to 15.1 and 0.7 to 2.5 d-1 …
Community Metabolism And Nutrient Cycling In The Mississippi River Plume: Evidence For Intense Nitrification At Intermediate Salinities, Joseph D. Pakulski, Ronald Benner, Rainer Amon, Brian Eadie, Terry Whitledge
Community Metabolism And Nutrient Cycling In The Mississippi River Plume: Evidence For Intense Nitrification At Intermediate Salinities, Joseph D. Pakulski, Ronald Benner, Rainer Amon, Brian Eadie, Terry Whitledge
Faculty Publications
Community respiration, net nutrient fluxes and heterotrophic bacterial production were investigated in the Mississippi River (USA) plume during May 1992 using dark bottle incubations of unfiltered water. Highest rates of community O2 consumption and dissolved inorganic carbon regeneration were observed at intermediate (10 to 27%0) plume salinities. Plume surface 02 consumption rates were 2- to 4-fold greater than rates reported previously during the summer and winter. Heterotrophic bacterial production ([3H]-leucine incorporation) was also highest at intermediate salinities and 2- to 4-fold greater than rates reported from other seasons. Net regeneration of NH4+ …
Activity And Distribution Of Attached Bacteria In Chesapeake Bay, Peter Griffith, Fuh-Kwo Shiah, Kathryn Gloersen, Hugh W. Ducklow, Madilyn Fletcher
Activity And Distribution Of Attached Bacteria In Chesapeake Bay, Peter Griffith, Fuh-Kwo Shiah, Kathryn Gloersen, Hugh W. Ducklow, Madilyn Fletcher
Faculty Publications
The purpose of this study was to further our understanding of the role of particle-associated bacteria in phytoplankton degradation in the Chesapeake Bay, USA, and to identify environmental parameters that control production by free and particle-associated bacteria. Surface and bottom waters at 10 stations along the length of the Bay were sampled over a 2 yr period. Samples were analyzed for temperature, salinity, chlorophyll, phaeophytin, particulate protein, thymidine incorporation (an estimate of bacterial growth rate), and bacterial total direct counts. Results demonstrated that freeliving bacteria were responsible for most of the total bacterial production, which was correlated with temperature and …