Life Sciences Commons^™

Accounting For False Positive Detection Error Induced By Transient Individuals, Chris Sutherland, D Elston, X. Lambin

Environmental Conservation Faculty Publication Series

Context. In metapopulations, colonisation is the result of dispersal from neighbouring occupied patches, typically juveniles dispersing from natal to breeding sites. When occupancy dynamics are dispersal driven, occupancy should refer to the presence of established, breeding populations. The detection of transient individuals at sites that are, by definition, unoccupied (i.e. false positive detections), may result in misleading conclusions about metapopulation dynamics. Until recently, the issue of false positives has been considered negligible and current efforts to account for such error have beenrestricted to the context of species misidentification. However, the detection of transient individuals visiting multiple siteswhile dispersing is a …

Evolution Of Hybrid Incompatibilities In Gene Regulatory Networks, Alexander Y. Tulchinsky

Open Access Dissertations

Under the Dobzhansky-Muller model, postzygotic isolation results from incompatibility between interacting genes. Evidence points to regulatory networks as a rich source of incompatibilities that impact hybrid fitness. Pleiotropy is a natural feature of regulatory networks because regulatory elements generally have multiple targets. Both pleiotropy and hybrid incompatibility arise due to genetic interactions; therefore we can expect an intimate association between them. In the following chapters, I investigate the relationship between pleiotropy and hybrid incompatibility in the context of regulatory networks.

In chapter one, I extend a general network-based study of hybrid incompatibility by incorporating a sequence-based thermodynamic model of transcriptional …

Science And Policy On Endocrine Disrupters Must Not Be Mixed: A Reply To A "Common Sense" Intervention By Toxicology Journal Editors, Åke Bergman, Anna-Maria Andersson, Georg Becher, Martin Van Den Berg, Bruce Blumberg, Poul Bjerregaard, Carl-Gustaf Bornehag, Riana Bornman, Ingvar Brandt, Jayne V. Brian, Stephanie C. Casey, Paul A. Fowler, Heloise Frouin, Linda C. Giudice, Taisen Iguchi, Ulla Hass, Susan Jobling, Anders Juul, Karen A. Kidd, Andreas Kortenkamp, Monica Lind, Olwenn V. Martin, Derek Muir, Roseline Ochieng, Nicolas Olea, Leif Norrgren, Erik Ropstad, Peter S. Ross, Christina Rudén, Martin Scheringer, Niels Erik Skakkebaek, Olle Söder, Carlos Sonnenschein, Ana Soto, Shanna Swan, Jorma Toppari, Charles R. Tyler, Laura N. Vandenberg, Anne Marie Vinggaard, Karin Wiberg, R. Thomas Zoeller

R. Thomas Zoeller

The “common sense” intervention by toxicology journal editors regarding proposed European Union endocrine disrupter regulations ignores scientific evidence and well-established principles of chemical risk assessment. In this commentary, endocrine disrupter experts express their concerns about a recently published, and is in our considered opinion inaccurate and factually incorrect, editorial that has appeared in several journals in toxicology. Some of the shortcomings of the editorial are discussed in detail. We call for a better founded scientific debate which may help to overcome a polarisation of views detrimental to reaching a consensus about scientific foundations for endocrine disrupter regulation in the EU.

The Ecology And Conservation Of The Eastern Spadefoot (Scaphiopus Holbrookii) In The Province Lands Of Cape Cod National Seashore, U.S.A., Brad Timm

Open Access Dissertations

The eastern spadefoot (Scaphiopus holbrookii) is an ephemeral wetland breeding amphibian that ranges from southern Florida north and westward to southeastern Missouri and northward along the Atlantic coastal plain to Massachusetts. This species is listed as either "threatened" or "endangered" in the four states (Connecticut, Massachusetts, New York, and Rhode Island) in the northeastern United States where it is known to exist. Population declines and extirpations throughout the region over the past century have been documented and are largely believed to be the result of habitat loss and/or alteration.

Very limited empirical results exist on many life history attributes of …

Habitat Heterogeneity Concentrates Predators In The Seascape: Linking Intermediate-Scale Estuarine Habitat To Striped Bass Distribution, Cristina Kennedy

Masters Theses 1911 - February 2014

Predators are key components of aquatic ecosystems and innovative approaches to understanding their spatial distribution are imperative for research, effective management, and conservation. Discontinuities, created by abrupt changes between two unlike entities, are irregularly-distributed, intermediate-scale features that can have a disproportionate effect on organismal distribution within the seascape. Here I use the discontinuity concept to relate the distribution of a predator, striped bass (Morone saxatilis), to physical features within Plum Island Estuary (PIE), MA. I mapped the distribution of 50 acoustically-tagged striped bass during four monthly surveys at 40 sites to evaluate if heterogeneity in physical features concentrated …

Interactions Between Pieris Oleracea And Pieris Rapae (Lepidoptera: Pieridae) Butterflies, And The Biological Control Agents Cotesia Glomerata And Cotesia Rubecula (Hymenoptera: Braconidae)., Megan V. Herlihy

Masters Theses 1911 - February 2014

Pieris oleracea, formerly Pieries napi, was once a widespread pierid butterfly in New England until the introduction of a biological control agent, Cotesia glomerata. It has been suggested that C. glomerata is responsible for the range reduction of P. oleracea. There are been several introductions of a second more specialized biological control agent, Cotesia rubecula, to the United States since the 1960’s. My first goal was to determine the current distribution and status of P. rapae parasitoids and the effectiveness of C. rubecula as a biological control agent since its release. The findings of a survey …

You’Ll Find No Answers Here, Joseph M. Morelli

Masters Theses 1911 - February 2014

One Studio Art graduate student's slog through the disciplines of art and science; noting the similarities, overlaps, and differences, and becoming utterly flummoxed in the process. It's about coming to terms with not knowing a whole lot about anything, really, but pressing on regardless.

Stiffness And Modulus And Independent Controllers Of Breast Cancer Metastasis, Dannielle Ryman

Masters Theses 1911 - February 2014

One out of eight women in the United States will develop breast cancer during their lifetime. Ninety percent of cancer related deaths are due to metastasis. Metastasis is the biological process where individual or aggregate cancerous cells break away from the primary tumor site and colonize distant, non-adjacent locations throughout the body. It is my objectives to study how mechanical, topographical and biochemical cues affect metastatic breast cancer metastasis at an early developmental stage. ECM components have previously been shown to affect cell motility via ligand-receptor interactions, and physical cues, such as matrix stiffness and protein density. The primary tumor …

Characterization Of Genes Required For Preimplantation Embryo Development, Marc P. Maserati Jr

Masters Theses 1911 - February 2014

Preimplantation embryo development in the mouse is a time of rapid cellular morphological and molecular changes leading to embryo implantation for the generation of offspring. The Mager lab studies these events occuring between fertilization and implantation in order to better understand the initial events which set the stage for all future aspects of development. The result of this research impacts many scientific disciplines including in-vitro based means of embryo culture, establishment of epigenetic marks, differentiation and cellular reprogramming and can be used in translational research for the improvement of in-vitro culture techniques and develop novel therapies such as cell replacement …

Pollen Biology, Alice Cheung, Hen-Ming Wu

Science and Engineering Saturday Seminars

No abstract provided.

Perturbation Of Brachypodium Distachyon Cellulose Synthase A4 Or 7 Results In Abnormal Cell Walls, Pubudu P. Handakumbura, Dominick A. Matos, Karen S. Osmont, Michael J. Harrington, Kyuyoung Heo, Kabindra Kafle, Seong H. Kim, Tobias Baskin, Samuel P. Hazen

Tobias Baskin

Background: Cellulose is an integral component of the plant cell wall and accounts for approximately forty percent of total plant biomass but understanding its mechanism of synthesis remains elusive. CELLULOSE SYNTHASE A (CESA) proteins function as catalytic subunits of a rosette-shaped complex that synthesizes cellulose at the plasma membrane. Arabidopsis thaliana and rice (Oryza sativa) secondary wall CESA loss-of-function mutants have weak stems and irregular or thin cell walls. Results: Here, we identify candidates for secondary wall CESAs in Brachypodium distachyon as having similar amino acid sequence and expression to those characterized in A. thaliana, namely CESA4/7/8. To functionally characterize …

Perturbation Of Brachypodium Distachyon Cellulose Synthase A4 Or 7 Results In Abnormal Cell Walls, Pubudu P. Handakumbura, Dominick A. Matos, Karen S. Osmont, Michael J. Harrington, Kyuyoung Heo, Kabindra Kafle, Seong H. Kim, Tobias I. Baskin, Samuel P. Hazen

Samuel P Hazen

Background: Cellulose is an integral component of the plant cell wall and accounts for approximately forty percent of total plant biomass but understanding its mechanism of synthesis remains elusive. CELLULOSE SYNTHASE A (CESA) proteins function as catalytic subunits of a rosette-shaped complex that synthesizes cellulose at the plasma membrane. Arabidopsis thaliana and rice (Oryza sativa) secondary wall CESA loss-of-function mutants have weak stems and irregular or thin cell walls. Results: Here, we identify candidates for secondary wall CESAs in Brachypodium distachyon as having similar amino acid sequence and expression to those characterized in A. thaliana, namely CESA4/7/8. To functionally characterize …

My Relations With Russian Polymer Science, Otto Vogl, Frank T. Traceski, Friderikh Diachekovski

Otto Vogl

No abstract provided.

Functional Characterization Of Cinnamyl Alcohol Dehydrogenase And Caffeic Acid O-Methyltransferase In Brachypodium Distachyon, Gina M. Trabucco, Dominick A. Matos, Scott J. Lee, Aaron J. Saathoff, Henry D. Priest, Todd C. Mockler, Gautam Sarath, Samuel P. Hazen

Samuel P Hazen

Background: Lignin is a significant barrier in the conversion of plant biomass to bioethanol. Cinnamyl alcohol dehydrogenase (CAD) and caffeic acid O-methyltransferase (COMT) catalyze key steps in the pathway of lignin monomer biosynthesis. Brown midrib mutants in Zea mays and Sorghum bicolor with impaired CAD or COMT activity have attracted considerable agronomic interest for their altered lignin composition and improved digestibility. Here, we identified and functionally characterized candidate genes encoding CAD and COMT enzymes in the grass model species Brachypodium distachyon with the aim of improving crops for efficient biofuel production. Results: We developed transgenic plants overexpressing artificial microRNA designed …