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- Alternative animal models (2)
- Developmental neurotoxicity (2)
- Planarian (2)
- Developmental systems drift (1)
- EES (1)
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- Evolutionary bias (1)
- Flame retardants (1)
- Gene regulatory networks (1)
- Genetic assimilation (1)
- Heart development (1)
- Herbivory (1)
- Holobiont (1)
- Mate choice (1)
- Mating call (1)
- Niche construction (1)
- OPFRs (1)
- Physalaemus pustulosus (1)
- Polybrominated diphenyl ethers (1)
- Selective constraints (1)
- Sexual selection (1)
- Tunicates (1)
- Túngara frog (1)
- Zebrafish (1)
Articles 1 - 12 of 12
Full-Text Articles in Life Sciences
Pharmacological Or Genetic Targeting Of Transient Receptor Potential (Trp) Channels Can Disrupt The Planarian Escape Response, Ziad Sabry , '21, A. Ho, D. Ireland, C. Rabeler, O. Cochet-Escartin, Eva-Maria S. Collins
Pharmacological Or Genetic Targeting Of Transient Receptor Potential (Trp) Channels Can Disrupt The Planarian Escape Response, Ziad Sabry , '21, A. Ho, D. Ireland, C. Rabeler, O. Cochet-Escartin, Eva-Maria S. Collins
Biology Faculty Works
In response to noxious stimuli, planarians cease their typical ciliary gliding and exhibit an oscillatory type of locomotion called scrunching. We have previously characterized the biomechanics of scrunching and shown that it is induced by specific stimuli, such as amputation, noxious heat, and extreme pH. Because these specific inducers are known to activate Transient Receptor Potential (TRP) channels in other systems, we hypothesized that TRP channels control scrunching. We found that chemicals known to activate TRPA1 (allyl isothiocyanate (AITC) and hydrogen peroxide) and TRPV (capsaicin and anandamide) in other systems induce scrunching in the planarian species Dugesia japonica and, except …
Aniseed 2019: 4d Exploration Of Genetic Data For An Extended Range Of Tunicates, J. Dardaillon, D. Dauga, P. Simion, E. Faure, T. A. Onuma, M. B. Debiasse, A. Louis, K. R. Nitta, M. Naville, L. Besnardeau, W. Reeves, K. Wang, M. Fagotto, M. Guéroult-Bellone, S. Fujiwara, R. Dumollard, M. Veeman, J.-N. Volff, H. Roest Crollius, E. Douzery, J. F. Ryan, Bradley Justin Davidson , '91, H. Nishida, C. Dantec, P. Lemaire
Aniseed 2019: 4d Exploration Of Genetic Data For An Extended Range Of Tunicates, J. Dardaillon, D. Dauga, P. Simion, E. Faure, T. A. Onuma, M. B. Debiasse, A. Louis, K. R. Nitta, M. Naville, L. Besnardeau, W. Reeves, K. Wang, M. Fagotto, M. Guéroult-Bellone, S. Fujiwara, R. Dumollard, M. Veeman, J.-N. Volff, H. Roest Crollius, E. Douzery, J. F. Ryan, Bradley Justin Davidson , '91, H. Nishida, C. Dantec, P. Lemaire
Biology Faculty Works
ANISEED (https://www.aniseed.cnrs.fr) is the main model organism database for the worldwide community of scientists working on tunicates, the vertebrate sister-group. Information provided for each species includes functionally-annotated gene and transcript models with orthology relationships within tunicates, and with echinoderms, cephalochordates and vertebrates. Beyond genes the system describes other genetic elements, including repeated elements and cis-regulatory modules. Gene expression profiles for several thousand genes are formalized in both wild-type and experimentally-manipulated conditions, using formal anatomical ontologies. These data can be explored through three complementary types of browsers, each offering a different view-point. A developmental browser summarizes the information in a gene- …
Linalool Acts As A Fast And Reversible Anesthetic In Hydra, T. Goel, R. Wang, S Martin, Elizabeth Y. Lanphear , '19, Eva-Maria S. Collins
Linalool Acts As A Fast And Reversible Anesthetic In Hydra, T. Goel, R. Wang, S Martin, Elizabeth Y. Lanphear , '19, Eva-Maria S. Collins
Biology Faculty Works
The ability to make transgenic Hydra lines has allowed for quantitative in vivo studies of Hydra regeneration and physiology. These studies commonly include excision, grafting and transplantation experiments along with high-resolution imaging of live animals, which can be challenging due to the animal’s response to touch and light stimuli. While various anesthetics have been used in Hydra studies, they tend to be toxic over the course of a few hours or their long-term effects on animal health are unknown. Here, we show that the monoterpenoid alcohol linalool is a useful anesthetic for Hydra. Linalool is easy to use, non-toxic, fast …
Variable Levels Of Drift In Tunicate Cardiopharyngeal Gene Regulatory Elements, W. Colgan, A. Leanza, A. Hwang, M. B. Debiasse, Isabel Llosa , '20, Daniel Rodrigues , '21, Hriju Adhikari , '20, Guillermo Barreto Corona , '19, Saskia Bock , '20, Amanda T. Carillo-Perez , '19, Meagan Currie , '20, S. Darkoa-Larbi, D. Dellal, Hanna Gutow , '20, P. Hokama, E. Kibby, N. Linhart, S. Moody, Allison Naganuma , '20, D. Nguyen, Ryan Stanton , '20, S. Stark, Cameron Tumey , '21, A. Velleca, J. F. Ryan, Bradley Justin Davidson , '91
Variable Levels Of Drift In Tunicate Cardiopharyngeal Gene Regulatory Elements, W. Colgan, A. Leanza, A. Hwang, M. B. Debiasse, Isabel Llosa , '20, Daniel Rodrigues , '21, Hriju Adhikari , '20, Guillermo Barreto Corona , '19, Saskia Bock , '20, Amanda T. Carillo-Perez , '19, Meagan Currie , '20, S. Darkoa-Larbi, D. Dellal, Hanna Gutow , '20, P. Hokama, E. Kibby, N. Linhart, S. Moody, Allison Naganuma , '20, D. Nguyen, Ryan Stanton , '20, S. Stark, Cameron Tumey , '21, A. Velleca, J. F. Ryan, Bradley Justin Davidson , '91
Biology Faculty Works
Background: Mutations in gene regulatory networks often lead to genetic divergence without impacting gene expression or developmental patterning. The rules governing this process of developmental systems drift, including the variable impact of selective constraints on different nodes in a gene regulatory network, remain poorly delineated. Results: Here we examine developmental systems drift within the cardiopharyngeal gene regulatory networks of two tunicate species, Corella inflata and Ciona robusta. Cross-species analysis of regulatory elements suggests that trans-regulatory architecture is largely conserved between these highly divergent species. In contrast, cis-regulatory elements within this network exhibit distinct levels of conservation. In particular, while most …
Mouth Function Determines The Shape Oscillation Pattern In Regenerating Hydra Tissue Spheres, R. Wang, T. Goel, K. Khazoyan, Ziad Sabry , '21, H. J. Quan, P. H. Diamond, Eva-Maria S. Collins
Mouth Function Determines The Shape Oscillation Pattern In Regenerating Hydra Tissue Spheres, R. Wang, T. Goel, K. Khazoyan, Ziad Sabry , '21, H. J. Quan, P. H. Diamond, Eva-Maria S. Collins
Biology Faculty Works
Hydra is a small freshwater polyp capable of regeneration from small tissue pieces and from aggregates of cells. During regeneration, a hollow bilayered sphere is formed that undergoes osmotically driven shape oscillations of inflation and rupture. These oscillations are necessary for successful regeneration. Eventually, the oscillating sphere breaks rotational symmetry along the future head-foot axis of the animal. Notably, the shape oscillations show an abrupt shift from large-amplitude, long-period oscillations to small-amplitude, short-period oscillations. It has been widely accepted that this shift in oscillation pattern is linked to symmetry breaking and axis formation, and current theoretical models of Hydra symmetry …
Developmental Symbiosis Facilitates The Multiple Origins Of Herbivory, Scott F. Gilbert
Developmental Symbiosis Facilitates The Multiple Origins Of Herbivory, Scott F. Gilbert
Biology Faculty Works
Developmental bias toward particular evolutionary trajectories can be facilitated through symbiosis. Organisms are holobionts, consisting of zygote‐derived cells and a consortia of microbes, and the development, physiology, and immunity of animals are properties of complex interactions between the zygote‐derived cells and microbial symbionts. Such symbionts can be agents of developmental plasticity, allowing an organism to develop in particular directions. This plasticity can lead to genetic assimilation either through the incorporation of microbial genes into host genomes or through the direct maternal transmission of the microbes. Such plasticity can lead to niche construction, enabling the microbes to remodel host anatomy and/or …
Screening For Neurotoxic Potential Of 15 Flame Retardants Using Freshwater Planarians, S. Zhang, D. Ireland, N. S. Sipes, M. Behl, Eva-Maria S. Collins
Screening For Neurotoxic Potential Of 15 Flame Retardants Using Freshwater Planarians, S. Zhang, D. Ireland, N. S. Sipes, M. Behl, Eva-Maria S. Collins
Biology Faculty Works
Asexual freshwater planarians are an attractive invertebrate model for high-throughput neurotoxicity screening, because they possess multiple quantifiable behaviors to assess distinct neuronal functions. Planarians uniquely allow direct comparisons between developing and adult animals to distinguish developmentally selective effects from general neurotoxicity. In this study, we used our automated planarian screening platform to compare the neurotoxicity of 15 flame retardants (FRs), consisting of representative phased-out brominated (BFRs) and replacement organophosphorus FRs (OPFRs). OPFRs have emerged as a proposed safer alternative to BFRs; however, limited information is available on their health effects. We found 11 of the 15 FRs (3/6 BFRs, 7/8 …
Illumination Pattern Design With Deep Learning For Single-Shot Fourier Ptychographic Microscopy, Yi Fei Cheng , '21, Megan Strachan , '21, Zachary Weiss , '20, Moniher Deb , '19, Dawn M. Carone, Vidya Ganapati
Illumination Pattern Design With Deep Learning For Single-Shot Fourier Ptychographic Microscopy, Yi Fei Cheng , '21, Megan Strachan , '21, Zachary Weiss , '20, Moniher Deb , '19, Dawn M. Carone, Vidya Ganapati
Biology Faculty Works
Fourier ptychographic microscopy allows for the collection of images with a high space-bandwidth product at the cost of temporal resolution. In Fourier ptychographic microscopy, the light source of a conventional widefield microscope is replaced with a light-emitting diode (LED) matrix, and multiple images are collected with different LED illumination patterns. From these images, a higher-resolution image can be computationally reconstructed without sacrificing field-of-view. We use deep learning to achieve single-shot imaging without sacrificing the space-bandwidth product, reducing the acquisition time in Fourier ptychographic microscopy by a factor of 69. In our deep learning approach, a training dataset of high-resolution images …
Towards A Developmental Biology Of Holobionts, Scott F. Gilbert
Towards A Developmental Biology Of Holobionts, Scott F. Gilbert
Biology Faculty Works
We do not develop as monogenomic organisms, instructed solely from the DNA and cytoplasm of the zygote. Rather, we are holobionts, symbiotic consortia containing numerous microbial genomes, whose signals are critically important for our normal development. Microbes play crucial roles in forming and maturing animal guts, immune systems, nervous systems, and reproductive organs. In some species, they regulate such developmental phenomena as the proper orientation of the anterior-posterior axis and metamorphosis. One of the biggest challenges to developmental biology, then, is studying the developmental biology of holobionts, where co-development is the rule, and where the body is seen as a …
Comparative Analysis Of Zebrafish And Planarian Model Systems For Developmental Neurotoxicity Screens Using An 87-Compound Library, D. Hagstrom, L. Truong, S. Zhang, R. Tanguay, Eva-Maria S. Collins
Comparative Analysis Of Zebrafish And Planarian Model Systems For Developmental Neurotoxicity Screens Using An 87-Compound Library, D. Hagstrom, L. Truong, S. Zhang, R. Tanguay, Eva-Maria S. Collins
Biology Faculty Works
There is a clear need to establish and validate new methodologies to more quickly and efficiently screen chemicals for potential toxic effects, particularly on development. The emergence of alternative animal systems for rapid toxicology screens presents valuable opportunities to evaluate how systems complement each other. In this article, we compare a chemical library of 87-compounds in two such systems, developing zebrafish and freshwater planarians, by screening for developmental neurotoxic effects. We show that the systems’ toxicological profiles are complementary to each other, with zebrafish yielding more detailed morphological endpoints and planarians more behavioral endpoints. Overall, zebrafish was more sensitive to …
Nineteen Years Of Consistently Positive And Strong Female Mate Preferences Despite Individual Variation, M. J. Ryan, K. A. Akre, Alexander T. Baugh, X. E. Bernal, A. M. Lea, C. Leslie, M. B. Still, D. Wylie, A. S. Rand
Nineteen Years Of Consistently Positive And Strong Female Mate Preferences Despite Individual Variation, M. J. Ryan, K. A. Akre, Alexander T. Baugh, X. E. Bernal, A. M. Lea, C. Leslie, M. B. Still, D. Wylie, A. S. Rand
Biology Faculty Works
Sexual selection driven by mate choice has generated some of the most astounding diversity in nature, suggesting population-level preferences should be strong and consistent over many generations. On the other hand, mating preferences are among the least repeatable components of an individual animal’s phenotype, suggesting low consistency across an animal’s lifetime. Despite decades of intensive study of sexual selection there is almost no information about the strength and consistency of preferences across many years. In this study we present the results of over 5000 mate choice tests with a species of wild frog conducted over 19 consecutive years. Results show …
Understories: A Common Ground For Art And Science, Scott F. Gilbert, S. R. Gilbert
Understories: A Common Ground For Art And Science, Scott F. Gilbert, S. R. Gilbert
Biology Faculty Works
No abstract provided.