Life Sciences Commons^™

Piscine Myocarditis Virus (Pmcv) In Wild Atlantic Salmon Salmo Salar, Torstein Tengs Dr.

Dr. Torstein Tengs

Cardiomyopathy syndrome (CMS) is a severe cardiac disease of sea-farmed Atlantic salmon Salmo salar L., but CMS-like lesions have also been found in wild Atlantic salmon. In 2010 a double-stranded RNA virus of the Totiviridae family, provisionally named piscine myocarditis virus (PMCV), was described as the causative agent of CMS. In the present paper we report the first detection of PMCV in wild Atlantic salmon. The study is based on screening of 797 wild Atlantic salmon by real-time RT-PCR. The samples were collected from 35 different rivers along the coast of Norway, and all individuals included in the study were …

Halloween 2012 Jack O'Lanterns Trick Or Treat, George Mcnamara

George McNamara

Halloween 2012 makes trick or treating more visual and interactive than in past years.

the download is a ZIP file containing three files.

Print out the (unnumbered) image on as large and nice printer paper as possible - I used glossy 44" wide here in Miami (University of Miami, MillerSchool of Medicine, Calder Library, Biomedical Communications dept - I also made another print on "fabric", also 44" wide to take with me to an HHMI Janelia Farm conference on 'turning images into knowledge' that ends on Oct 31 - might stay up for a second conference, "GFP..." that start Nov …

Libraries At The University Of Massachusetts Amherst: Seeking An International Perspective, Maxine G. Schmidt

Maxine G Schmidt

Presentation delivered to librarians in China, Japan and South Korea as part of my sabbatical research on the use of libraries by Asian students in their home countries.

Mcnamara 20120831fri-20120904tue Cosmic Ray Particles By Ccd Imaging, George Mcnamara

George McNamara

McNamara 20120831Fri-20120904Tue Cosmic Ray Particles by CCD imaging.zip contains image files in support of a Microscopy Today article - please see

http://www.microscopy-today.com/

Prevalence Of Tick Borne Encephalitis Virus In Tick Nymphs In Relation To Climatic Factors On The Southern Coast Of Norway, Torstein Tengs Dr.

Dr. Torstein Tengs

BACKGROUND

Tick-borne encephalitis (TBE) is among the most important vector borne diseases of humans in Europe and is currently identified as a major health problem in many countries. TBE endemic zones have expanded over the past two decades, as well as the number of reported cases within endemic areas. Multiple factors are ascribed for the increased incidence of TBE, including climatic change. The number of TBE cases has also increased in Norway over the past decade, and the human cases cluster along the southern coast of Norway. In Norway the distribution and prevalence of TBE virus (TBEV) in tick populations …

Cosmic Ray Particles Images With Orca-Ii Erg, George Mcnamara

George McNamara

Cosmic ray particles image series acquired using a Hamamatsu ORCA-II ERG scientific grade CCD camera, cooled to -60 C. Each image is a consecutive 600 second (10 minute) exposure time with no light to the camera.

While processing the data, I discoverd that the background changed around planes 25 and 227 (see Excel file and jpeg screenshots), so I also processed only planes 025-227 (203 planes total, 2030 minutes, 33.83 hours). the CCD industry "rule of thumb" for a "typical" CCD sensor (i.e. 1/3" CCD) is that one cosmic ray particle strikes a sensor approximately every 30 seconds (assuming not …

Locust Dynamics: Behavioral Phase Change And Swarming, Chad M. Topaz, Maria R. D'Orsogna, Leah Edelstein-Keshet, Andrew J. Bernoff

Chad M. Topaz

Locusts exhibit two interconvertible behavioral phases, solitarious and gregarious. While solitarious individuals are repelled from other locusts, gregarious insects are attracted to conspecifics and can form large aggregations such as marching hopper bands. Numerous biological experiments at the individual level have shown how crowding biases conversion towards the gregarious form. To understand the formation of marching locust hopper bands, we study phase change at the collective level, and in a quantitative framework. Specifically, we construct a partial integrodifferential equation model incorporating the interplay between phase change and spatial movement at the individual level in order to predict the dynamics of …

A Strain Of Piscine Myocarditis Virus (Pmcv) Infecting Argentina Silus (Ascanius), Torstein Tengs Dr.

Dr. Torstein Tengs

No abstract.

A Comprehensive Solution To The Marine Biofouling Problem For The Endangered Florida Manatee And Other Species, Kathleen Oppenheimer Berkey Esq., Aicp, Todd K. Bendor Phd

Kathleen Oppenheimer Berkey

Marine biofouling is the undesirable accumulation of microorganisms, plants, algae, arthropods, or mollusks on a surface, such as a ship’s hull, when it is in contact with water for a period of time. Biofouling and its traditional remedies pose serious environmental consequences, including: 1) the transportation of nonindigenous marine species that can outcompete with native species for space and resources, thereby reducing biodiversity and threatening the viability of fisheries or aquaculture, 2) the accumulation of zinc- or copper-based toxins that can harm mollusk and marine mammal populations, and 3) the increase in weight, decrease in flexibility, decrease in mobility, and …

Quantification Of Piscine Reovirus (Prv) At Different Stages Of Atlantic Salmon Salmo Salar Production, Torstein Tengs Dr.

Dr. Torstein Tengs

The newly described piscine reovirus (PRV) appears to be associated with the development of heart and skeletal muscle inflammation (HSMI) in farmed Atlantic salmon Salmo salar L. PRV seems to be ubiquitous among fish in Norwegian salmon farms, but high viral loads and tissue distribution support a causal relationship between virus and disease. In order to improve understanding of the distribution of PRV in the salmon production line, we quantified PRV by using real-time PCR on heart samples collected at different points in the life cycle from pre-smolts to fish ready for slaughter. PRV positive pre-smolts were found in about …

Flatbed Scanner Report - Optical Density Dynamic Range, George Mcnamara

George McNamara

George McNamara (now at University of Miami) report for Hua Yu and Richard Jove, City of Hope National Medical Center, on optical density dynamic range of several flatbed scanners.

Double-Crested Cormorant Distribution On Catfish Aquaculture In The Yazoo River Basin Of Mississippi, Brian S. Dorr, Loren W. Burger, Scott C. Barras, Kristina Casscles Godwin

Brian S Dorr

No abstract provided.

Introduction To Nanoscopy Nano-Talk, George Mcnamara

George McNamara

T7-1 is the designation for the LMRG Nanoscopy session at ABRF in Orlando, FL, on March 20, 2012. The PDF file here is a draft of my presentation.

May not be very helpful since (1) would probably help to know what is in my head and each slide will [hopefully] prompt me to say, and (2) 10 minute talk so I am going to push the "next slide" button after saying very little.

__________________

Publisher statement:

The T7-1 Introduction to Nanoscopy Nano Talk is copyrighted (c) George McNamara, 2012. Except for (1) screenshots from research articles (which are copyrighted by …

Pubspectra - Open Data Access Fluorescence Spectra, George Mcnamara

George McNamara

The Internet is enabling greater access to spectral imaging publications, spectral graphs, and data than that was available a generation ago. The spectral imaging systems discussed in this issue of Cytometry work because reagent and hardware spectra are reproducible, reusable, and provide input to spectral unmixing and spectral components recognition algorithms. These spectra need to be readily available in order to determine what to purchase, how to use it, and what the output means. We refer to several commercially sponsored and academic spectral web sites and discuss our spectral graphing and data sites. Sites include fluorescent dye graph servers from …

Mcnamara 2011 Feature Extraction (Image Analysis), George Mcnamara

George McNamara

Feature Extraction presentation and movies in a ZIP file from a presentation I gave at ISAC 2011 in Baltomore, Md.

Feature extraction is one phrase for image analysis.

Rogers Pmn Movie - Background Information, George Mcnamara

George McNamara

Please see

http://mdc.custhelp.com/app/answers/detail/a_id/18689/~/metamatters-newsletters

for my series of MetaMorph MetaMatters articles in volume 2, numbers 3 through 6, on the Rogers PMN Panorama data set.

http://mdc.custhelp.com/app/answers/detail/a_id/18689/~/metamatters-newsletters

Brief summary (for more, see the Word doc)

Effectiveness And Utility Of Acoustic Recordings For Surveying Tropical Birds, Antonio Celis-Murillo, Jill L. Deppe, Michael P. Ward

Jill L Deppe

Although acoustic recordings have recently gained popularity as an alternative to point counts for surveying birds, little is known about the relative performance of the two methods for detecting tropical bird species across multiple vegetation types. During June and July 2008, we collected species detection/nondetection data to compare the performance of a quadraphonic acoustic recording system and point counts for estimating species richness and composition and detection probabilities of 15 rare, moderately common, and common tropical bird species across six structurally distinct vegetation types (coastal dune scrub, mangrove, low-stature deciduous thorn forest, early and late successional medium-stature semievergreen forest, and …

Seed Biology Of Physaria Ludoviciana (Silvery Bladderpod; Brassicaceae ), An Endangered Species In Sand Prairies Of The Midwest, Marissa C. Grant, Ann E. Claerbout, Janice M. Coons, Henry R. Owen

Henry R. Owen

Physaria ludoviciana (Nuttal) O'Kane & Al-Shehbaz (silvery bladderpod) is a state endangered species in Illinois, Minnesota and Wisconsin, the eastern edge of its range. Our goal was to investigate its seed biology (production, dispersal, seed bank longevity, afterripening, seed longevity after storage using germination and emergence, and seedling establishment). This information will be useful for conservation efforts of this endangered species. Over a ten-year period, various seed biology parameters were measured. Infructescences were counted to estimate seed production with 110–744 seeds per reproductive plant. Soil samples were collected at various distances to estimate dispersal where seeds dispersed less than a …

Light Interception Efficiency Explained By Two Simple Variables: A Test Using A Diversity Of Small- To Medium-Sized Woody Plants, R A. Duursma, D S. Falster, F Valladares, F J. Sterck, R W. Pearcy, C H. Lusk, Kerrie M. Sendall, M Nordenstahl, N C. Houter, B J. Atwell, N Kelly, J.W. G. Kelly, M Liberloo, D T. Tissue, B E. Medlyn, D S. Ellsworth

Kerrie M Sendall

• Plant light interception efficiency is a crucial determinant of carbon uptake by individual plants and by vegetation. Our aim was to identify whole-plant variables that summarize complex crown architecture, which can be used to predict light interception efficiency. • We gathered the largest database of digitized plants to date (1831 plants of 124 species), and estimated a measure of light interception efficiency with a detailed three-dimensional model. Light interception efficiency was defined as the ratio of the hemispherically averaged displayed to total leaf area. A simple model was developed that uses only two variables, crown density (the ratio of …

Health Effects Of Trihalomethanes As Chlorinated Disinfection By Products: A Review Article, Mohammad Reza Mohammad Shafiee, Lobat Taghavi

Mohammad Reza Mohammad Shafiee

Trihalomethanes (THMs) were among the first disinfection byproducts to be discovered in chlorinated water. The substances form during a reaction between chlorine and organic matter in the water. Trihalomethanes are suspected to have negative effects on birth such as, low birth weight, intrauterine growth retardation in term births, as well as gestational age and preterm delivery. There are also some evidences showing these by-products to be mutagenic and carcinogenic, the greatest amount of evidence being related to the bladder cancer. However, there exist inconsistencies regarding such effects of THMs as different studies have provided different results in this regard. The …

Waste Recycling: Feasibility Of Saw Dust Based Spent Mushroom Substrate And Goat Manure In Vermicomposting, Adi Ainurzaman Jamaludin, Noor Zalina Mahmood, Noorlidah Abdullah

Adi Ainurzaman Jamaludin

Vermicomposting for 140 days by using Lumbricus rubellus was conducted after 21 days of natural pre-composting. Five treatments in different ratio of goat manure: spent mushroom substrate were prepared as feed materials with four replicates for each treatment namely; 20:80 (TA), 40:60 (TB), 50:50 (TC), 60:40 (TD) and 80:20 (TE). As for control, each treatment without earthworm was prepared. On the basis of nutrient elements, goat manure and spent mushroom substrate can be decomposed through both methods of vermicomposting and natural composting. Findings of this study indicated that the higher usage of goat manure with longer duration resulted in the …

Bioconversion Of Biomass Residue From The Cultivation Of Pea Sprouts On Spent Pleurotus Sajor-Caju Compost Employing Lumbricus Rubellus, Noor Zalina Binti Mahmood

Noor Zalina Binti Mahmood

Vermicomposting is a green technology for the purpose of nutrient enrichment from a variety of organic waste products. In this study, saw dust-based spent mushroom compost (SMC), an organic waste and biomass residue, was used as a medium for the cultivation of pea sprouts. After harvesting the pea sprouts, the growth medium was reused to culture earthworms, Lumbricus rubellus. The culturing activity was conducted for 50 days without any pre-composting or thermocomposting. Thus duration of vermicomposting process was shortened as opposed to previous work on vermicomposting of saw dust-based SMC (no amendment) for 70 days. The culturing treatments were conducted …

Determining The Optimal Concentration Of Mannose As An Effective Selection Agent For Transformed Oil Palm Cells Using The Phosphomannose Isomerase (Pmi) Gene As A Positive Selectable Marker, Norzulaani Khalid

Norzulaani Khalid

The elimination of antibiotic or herbicide resistance gene usage in genetically modified plants is being encouraged due to public concern. In response to this, alternative selection systems for the recovery of transgenic oil palm were developed using positive selectable markers. To establish a selection system that utilises the phosphomannose isomerase (pmi) gene for oil palm transformation, we first determined the optimal mannose concentration for selecting the transformed cells. Non-transformed embryogenic calli were cultured on media containing various combinations and concentrations of mannose and a usable source of carbon, i.e. sucrose, ranging in content from 0 to 30 g litre . …

Boesenbergia Rotunda: From Ethnomedicine To Drug Discovery, Norzulaani Khalid

Norzulaani Khalid

Boesenbergia rotunda is a herb from the Boesenbergia genera under the Zingiberaceae family. B. rotunda is widely found in Asian countries where it is commonly used as a food ingredient and in ethnomedicinal preparations. The popularity of its ethnomedicinal usage has drawn the attention of scientists worldwide to further investigate its medicinal properties. Advancement in drug design and discovery research has led to the development of synthetic drugs from B. rotunda metabolites via bioinformatics and medicinal chemistry studies. Furthermore, with the advent of genomics, transcriptomics, proteomics, and metabolomics, new insights on the biosynthetic pathways of B. rotunda metabolites can be …

In Vitro Plant Regeneration, Antioxidant And Antibacterial Studies On Broccoli, Brassica Oleracea Var. Italica, Rosna Binti Mat Taha

Rosna Binti Mat Taha

Leaf and shoot tip explant of Brassica oleracea var. italica were inoculated on Murashige and Skoog (MS) basal medium supplemented with various concentrations of (BAP) and (IBA), alone and in combinations to achieve plant regeneration. Subsequently, antioxidant and antibacterial activities were determined from In vitro and In vivo plant parts. The highest mean numbers of shoot was observed on combinations of 1 mg l(-1) and 1.5 mg l(-1) of BAP and IBA, 9.49 and 8.69, respectively. The highest number of shoot produced (11.55) per shoot tip explant was recorded on 2.5 mg l(-1) BAP. In addition, highest percentage of roots …

A Comparison Of Social Organization In Asian Elephants And African Savannah Elephants, Shermin De Silva, George Wittemyer

Shermin de Silva

Asian and African elephant species have diverged by ca. 6 million years, but as large, generalist herbivores they occupy similar niches in their respective environments. Although the multilevel, hierarchical nature of African savannah elephant societies is well established, it has been unclear whether Asian elephants behave similarly. Here we quantitatively compare the structure of both species’ societies using association data collected using the same protocol over similar time periods. Sociality in both species demonstrates well-defined structure, but in contrast to the African elephants of Samburu the Uda Walawe Asian elephants are found in smaller groups, do not maintain coherent core …

Efficacy, Effort, And Cost Comparisons Of Trapping And Acetaminophen-Baiting For Control Of Brown Treesnakes On Guam, Larry Clark, Peter J. Savarie, John A. Shivik, Stewart W. Breck, Brian S. Dorr

Brian S Dorr

Abstract: Brown treesnakes (Boiga irregularis) are an invasive species to the island of Guam. Because they have extirpated the native forest avifauna on Guam and are a threat to other Pacific islands, the development of efficient and cost-effective methods to control them is desired. We compared the efficacy, cost, and effort required to remove brown treesnakes on 6-ha plots in forest scrub on Guam, using 2 methods: trapping and poison baiting. Toxic baits consisted of dead neonatal mice adulterated with 80-mg acetaminophen. To assess efficacy, we used mark-recapture methods to estimate snake abundance on plots 12 days before and 12 …

The Direction Of Research And Management Of Double-Crested Cormorants Heading Into The 2000s: Symposium Overview And Future Information Needs, Brian S. Dorr, Christopher Somers

Brian S Dorr

Abstract.—An overview is provided of a symposium on the direction of research and management of Double-crested Cormorants (Phalacrocorax auritus) heading into the 2000s. The current symposium built on previous efforts and described a number of focus areas of informational need, including cormorant impacts on natural resources, demographics of cormorants, assessment of control efforts, assessment of fish consumption and bioenergetics, and cormorant spatial ecology and influences on movements. The cormorant symposium highlighted a shift in research focus relative to earlier symposia, from evaluating potential impacts on commercial and natural resources to evaluating management actions in attaining desired goals. In addition, the …

Modification Of Net Configurations Of The Coda Netlauncher© To Enhance Bird Capture, Amanda M. Prisock, Brian S. Dorr, James C. Cumbee

Brian S Dorr

Abstract: We modified and evaluated capture nets fi red from the Coda Netlauncher® as a tool for capturing various avian species. We modified the netlauncher by using customized nets to maximize the area of the capture zone. We captured 137 birds, comprising 12 species, in 23 attempts between July 2008 and October 2009 using this method. Capture success rates varied from 25 to 69% were comparable to success rates reported for other capture methods for these species. However, individual capture success for different net configurations varied greatly from 3 to 65%. Minimal injuries and 2 bird fatalities were reported. The …

Management Of Double-Crested Cormorants To Improve Sport Fisheries In Michigan: Three Case Studies, Brian S. Dorr, Shauna L. Hanisch, Peter H. Butchko, David G. Fielder

Brian S Dorr

No abstract provided.