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Full-Text Articles in Life Sciences
Present Effects Of Past Wildfires On The Diets Of Stream Fish, Peter Koetsier, Quenton Tuckett, Joshua White
Present Effects Of Past Wildfires On The Diets Of Stream Fish, Peter Koetsier, Quenton Tuckett, Joshua White
Biology Faculty Publications and Presentations
We investigated present indirect effects from a decade-old burn on the diets of stream fish. Based on soil instability and burn patterns from a 12–14-year-old wildfire complex, we separated 9 streams into 3 conditions: unburned, burned, and burned/scoured (i.e., experiencing a massive scour event 1 year post-burn). In the streams, we measured light levels and water temperatures, and we estimated fish density and biomass. We removed the digestive tracts from 9–15 rainbow trout (Oncorhynchus mykiss) from each stream and used a gravimetric procedure to analyze gut contents. Canopy cover development may dictate the composition of dietary items. Greater …
A Versatile Computational Pipeline For Bacterial Genome Annotation Improvement And Comparative Analysis, With Brucella As A Use Case, Gongxin Yu, Eric E. Snyder, Stephen M. Boyle, Oswald R. Crasta, Michael Czar, Shrinivasrao P. Mane, Anjan Purkayastha, Bruno Sobral, João C. Setubal
A Versatile Computational Pipeline For Bacterial Genome Annotation Improvement And Comparative Analysis, With Brucella As A Use Case, Gongxin Yu, Eric E. Snyder, Stephen M. Boyle, Oswald R. Crasta, Michael Czar, Shrinivasrao P. Mane, Anjan Purkayastha, Bruno Sobral, João C. Setubal
Biology Faculty Publications and Presentations
We present a bacterial genome computational analysis pipeline, called GenVar. The pipeline, based on the program GeneWise, is designed to analyze an annotated genome and automatically identify missed gene calls and sequence variants such as genes with disrupted reading frames (split genes) and those with insertions and deletions (indels). For a given genome to be analyzed, GenVar relies on a database containing closely related genomes (such as other species or strains) as well as a few additional reference genomes. GenVar also helps identify gene disruptions probably caused by sequencing errors. We exemplify GenVar’s capabilities by presenting results from the analysis …