Life Sciences Commons^™

Density Dependence Drives Habitat Production And Survivorship Of Acropora Cervicornis Used For Restoration On A Caribbean Coral Reef, Mark C. Ladd, Andrew A. Shantz, Ken Nedimyer, Deron E. Burkepile

Department of Biological Sciences

Coral restoration is gaining traction as a viable strategy to help restore degraded reefs. While the nascent field of coral restoration has rapidly progressed in the past decade, significant knowledge gaps remain regarding the drivers of restoration success that may impede our ability to effectively restore coral reef communities. Here, we conducted a field experiment to investigate the influence of coral density on the growth, habitat production, and survival of corals outplanted for restoration. We used nursery-raised colonies of Acropora cervicornis to experimentally establish populations of corals with either 3, 6, 12, or 24 corals within 4m² plots, generating …

Otopathogenic Pseudomonas Aeruginosa Enters And Survives Inside Macrophages, Rahul Mittal, Christopher V. Lisi, Hansi Kumari, M'Hamed Grati, Patricia Blackwelder, Denise Yan, Chaitanya Jain, Kalai Mathee, Paulo H. Weckwerth, Xue Z. Liu

Biomolecular Sciences Institute: Faculty Publications

Otitis media (OM) is a broad term describing a group of infectious and inflammatory disorders of the middle ear. Despite antibiotic therapy, acute OM can progress to chronic suppurative otitis media (CSOM) characterized by ear drum perforation and purulent discharge. Pseudomonas aeruginosa is the most common pathogen associated with CSOM. Although, macrophages play an important role in innate immune responses but their role in the pathogenesis of P. aeruginosa-induced CSOM is not known. The objective of this study is to examine the interaction of P. aeruginosa with primary macrophages. We observed that P. aeruginosa enters and multiplies inside human …

Screening Of Plants For Antibacterial Properties: Growth Inhibition Of Staphylococcus Aureus By Artemisia Tridentata, Steven Ross Eichelbaum

FIU Electronic Theses and Dissertations

Drug-resistant pathogenic and opportunistic bacteria are increasing in occurrence and prevalence, and pose a dangerous threat to human health. In the search for novel antibiotics with which to combat this threat, plants, specifically those used in traditional medicine with ascribed antibacterial properties, offer a promising and potentially vast source of such therapeutic compounds. The purpose of this study was therefore to screen chemical extracts created from various plant species for antibacterial properties versus pathogenic bacterial species. In the course of these antibacterial assays, we successfully identified a methanol extract derived from Artemisia tridentata tridentata plant material as capable of inhibiting …

Elucidating The Role Of Mifs-Mifr Two-Component System In Regulating Pseudomonas Aeruginosa Pathogenicity, Gorakh Digambar Tatke

FIU Electronic Theses and Dissertations

Pseudomonas aeruginosa is a Gram-negative, metabolically versatile, opportunistic pathogen that exhibits a multitude of virulence factors, and is extraordinarily resistant to a gamut of clinically significant antibiotics. This ability is in part mediated by two-component systems (TCS) that play a crucial role in regulating virulence mechanisms, metabolism and antibiotic resistance. Our sequence analysis of the P. aeruginosa PAO1 genome revealed the presence of two open reading frames, mifS and mifR, which encodes putative TCS proteins, a histidine sensor kinase MifS and a response regulator MifR, respectively. This two-gene operon was found immediately upstream of the poxAB operon, where poxB encodes …

Seasonal Regulation Of Herbivory And Nutrient Effects On Macroalgal Recruitment And Succession In A Florida Coral Reef, Alain Duran, Ligia Collado-Vides, Deron E. Burkepile

Department of Biological Sciences

Herbivory and nutrient enrichment are drivers of benthic dynamics of coral reef macroalgae; however, their impact may vary seasonally. In this study we evaluated the effects of herbivore pressure, nutrient availability and potential propagule supply on seasonal recruitment and succession of macroalgal communities on a Florida coral reef. Recruitment tiles, replaced every three months, and succession tiles, kept in the field for nine months, were established in an ongoing factorial nutrient enrichment-herbivore exclusion experiment. The ongoing experiment had already created very different algal communities across the different herbivory and nutrient treatments. We tracked algal recruitment, species richness, and species abundance …

Biogeographical Patterns Of Soil Microbial Communities: Ecological, Structural, And Functional Diversity And Their Application To Soil Provenance, Natalie Damaso

FIU Electronic Theses and Dissertations

The current ecological hypothesis states that the soil type (e.g., chemical and physical properties) determines which microbes occupy a particular soil and provides the foundation for soil provenance studies. As human profiles are used to determine a match between evidence from a crime scene and a suspect, a soil microbial profile can be used to determine a match between soil found on the suspect’s shoes or clothing to the soil at a crime scene. However, for a robust tool to be applied in forensic application, an understanding of the uncertainty associated with any comparisons and the parameters that can significantly …

A Morphological, Functional, And Genetic Investigation Of The Male Compound Eye Phenotype Of Chrysomya Megacephala (Diptera: Calliphoridae)), Joshua Smith

FIU Electronic Theses and Dissertations

A very unique compound eye in dipterans is found in males of the forensically important blow fly, Chrysomya megacephala (Diptera: Calliphoridae). This compound eye is characterized by an area of enlarged dorsal facets that, unlike almost all other regional changes in dipteran ommatidia size, is not accompanied by a change in resolution. This region is believed to play a role in mate tracking and allow for increased light capture, though no behavioral studies have tested these claims. An initial goal of the dissertation was to examine the function of this compound eye. Using allometric measurements coupled with behavioral tests, I …

Investigating Sub-Tropical Community Resistance And Resilience To Climate Disturbance, Ross E. Boucek

FIU Electronic Theses and Dissertations

Changes in global climate will likely increase climate variability. In turn, changes in climate variability have begun to alter the frequency, intensity, and timing of climate disturbances. Continued changes in the climate disturbance regime experienced by natural systems will undoubtedly affect ecological processes at every hierarchical scale. Thus, in order to predict the dynamics of ecological systems in the future, we must develop a more mechanistic understanding of how and in what ways climate disturbance affects natural systems. In South Florida, two climate disturbances recently affected the region, a severe cold spell in 2010, and a drought in 2011. Importantly, …

Maximum Swimming Speeds Of Sailfish And Three Other Large Marine Predatory Fish Species Based On Muscle Contraction Time And Stride Length: A Myth Revisited, Morten B.S. Svendsen, Paolo Domenici, Stefano Marras, Jens Krause, Kevin M. Boswell, Ivan Rodriguez-Pinto, Alexander D.M. Wilson, Ralf H.J.M. Kurvers, Paul E. Viblanc, Jean S. Finger, John F. Steffensen

Department of Biological Sciences

Billfishes are considered to be among the fastest swimmers in the oceans. Previous studies have estimated maximum speed of sailfish and black marlin at around 35 m s−1 but theoretical work on cavitation predicts that such extreme speed is unlikely. Here we investigated maximum speed of sailfish, and three other large marine pelagic predatory fish species, by measuring the twitch contraction time of anaerobic swimming muscle. The highest estimated maximum swimming speeds were found in sailfish (8.3±1.4 m s−1), followed by barracuda (6.2±1.0 m s−1), little tunny (5.6±0.2 m s−1) and dorado (4.0±0.9 m s−1); although size-corrected performance was highest …

Medicinal Plants Of Trinidad And Tobago: Selection Of Antidiabetic Remedies, Angelle L. Bullard-Roberts

FIU Electronic Theses and Dissertations

Diabetes mellitus (DM) is a group of non-infectious diseases that cause hyperglycemia. DM symptoms were first clinically described by ancient Greek physicians whose prescriptions included plant-based remedies. Today, DM affects >400 million people globally and prevalence rates are rapidly increasing in developing countries where basic healthcare relies on local knowledge of botanical remedies. Many developing countries are home to diverse peoples and plants—providing fodder for varied plant-selection strategies and unique botanical pharmacopoeias.

I addressed the plant-selection strategies used in a multi-ethnic, developing country, Trinidad and Tobago (T&T), to ascertain their role in shaping the local antidiabetic pharmacopoeia and to assess …

Vocal Flexibility And Regional Variation In Free-Tailed Bat Song, Israel Salazar

FIU Electronic Theses and Dissertations

While much work has been done on regional vocal variation in birds, relatively few studies have found evidence of similar variation in mammalian vocalizations. This study quantifies individual, colonial, and regional level variation in T. brasiliensis songs in the southeastern United States. Brazilian free-tailed bats (Tadarida brasiliensis) are among a handful of mammals that produce complex, hierarchically structured vocalizations. Their songs are composed of multiple syllables that are combined into three phrases that vary in number and order across renditions. Tadarida brasiliensis songs showed considerable amount of variation, and differed significantly between locations in terms of syllable structure …

Influence Of Experimental Sheet Flow On Aquatic Foods Webs Of The Central Everglades, Sarah C. Bornhoeft

FIU Electronic Theses and Dissertations

Establishing historical water velocities is a goal of Everglades restoration because of their role maintaining landscape topographic relief. However, flows may also change the trophic state of marshes by phosphorus loading. I used fatty acid (FA) and stoichiometric data to quantify how increased sheet flow altered the relative heterotrophic and autotrophic contributions to aquatic consumers in a field experiment that introduced flowing water to an Everglades marsh in November, 2014. Algal taxonomic composition was different between pre-flow and flow sampling, marked by increases in the nutrient exploiting Mougeotia species (green algae) during flow sampling. Dietary tracer FAs in consumers reflected …

Gammaridean Amphipods As Bioindicators In Subtropical Seagrass Ecosystems, Jennifer L. Sweatman

FIU Electronic Theses and Dissertations

Anthropogenic disturbances are ubiquitous in coastal marine ecosystems. As such, more intensive monitoring efforts are necessary to conserve these valuable habitats. Bioindicators, organisms that predictably respond to changes in environmental variables, may be utilized in monitoring efforts to assess ecosystem functioning. To incorporate organisms into monitoring programs as bioindicators managers need to first understand the difference between the natural phenology of the focal organisms and their responses to different forms of anthropogenic disturbance.

To determine if gammaridean amphipods could be used as indicators of changes in environmental quality in sub-tropical seagrass ecosystems, I conducted spatial and temporal surveys of amphipod …

Genetic Patterns Of Domestication In Pigeonpea (Cajanus Cajan (L.) Millsp.) And Wild Cajanus Relatives, Mulualem T. Kassa, R. Varma Penmetsa, Noelia Carrasquilla-Garcia, Birinchi K. Sarma, Subhojit Datta, Hari D. Upadhyaya, Rajeev K. Varshney, Eric J.B. Von Wettberg, Douglas R. Cook

Department of Biological Sciences

Pigeonpea (Cajanus cajan) is an annual or short-lived perennial food legume of acute regional importance, providing significant protein to the human diet in less developed regions of Asia and Africa. Due to its narrow genetic base, pigeonpea improvement is increasingly reliant on introgression of valuable traits from wild forms, a practice that would benefit from knowledge of its domestication history and relationships to wild species. Here we use 752 single nucleotide polymorphisms (SNPs) derived from 670 low copy orthologous genes to clarify the evolutionary history of pigeonpea (79 accessions) and its wild relatives (31 accessions). We identified three well-supported lineages …

Comparison Of Synthetic Versus Organic Herbicides/Insecticides On Arbuscular Mycorrhizal Fungi In Abelmoschus Esculentus, Ariel Freidenreich

FIU Electronic Theses and Dissertations

Arbuscular mycorrhizal fungi (AMF) play a crucial role in improving the growth of a vast majority of plants. Past researchers have discovered that agricultural practices have a significant negative effect on the diversity of AMF. Arbuscular mycorrhizal fungi are reported to enhance plant nutrient uptake, stress tolerance, and soil aggregate formation which are key aspects of productive low-input farming. The objective of this study was to investigate the effects of four pesticides on the ability of AMF to colonize the roots of okra plants (Abelmoschus esculentus). The pesticides being tested include two synthetic chemicals (glyphosate and carbaryl) and …

Estimating The Global Conservation Status Of More Than 15,000 Amazonian Tree Species, Kenneth J. Feeley

Department of Biological Sciences

No abstract provided.

Early Genotoxic And Cytotoxic Effects Of The Toxic Dinoflagellate Prorocentrum Lima In The Mussel Mytilus Galloprovincialis, María Verónica Prego-Faraldo, Vanessa Valdiglesias, Blanca Laffon, Josefina Mendez, Jose M. Eirin-Lopez

Department of Biological Sciences

Okadaic acid (OA) and dinophysistoxins (DTXs) are the main toxins responsible for diarrhetic shellfish poisoning (DSP) intoxications during harmful algal blooms (HABs). Although the genotoxic and cytotoxic responses to OA have been evaluated in vitro, the in vivo effects of these toxins have not yet been fully explored. The present work fills this gap by evaluating the in vivo effects of the exposure to the DSP-toxin-producing dinoflagellate Prorocentrum lima during the simulation of an early HAB episode in the mussel Mytilus galloprovincialis. The obtained results revealed that in vivo exposure to this toxic microalgae induced early genotoxicity in …

Life In The Underworld: Anchialine Cave Biology In The Era Of Speleogenomics, Jorge L. Perez-Moreno, Thomas M. Iliffe, Heather D. Bracken-Grissom

Department of Biological Sciences

Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing …

Commentary: Novel Competitors Shape Species' Responses To Climate Change, Belen Fadrique, Kenneth J. Feeley

Department of Biological Sciences

No abstract provided.

A Study On The Dissolution Of Autunite Minerals By Facultative Bacteria In Bicarbonate Media, Sandra C. Herrera Landaez

FIU Electronic Theses and Dissertations

Uranium (U) is a key contaminant at the Hanford site. The formation of uranyl-phosphate bearing minerals such as autunite as a result of tripoliphosphate injections has been used as a U immobilization strategy. Bacteria are known as key factors governing the fate and transport of soil contaminants. This research evaluated the interaction of facultative bacteria Shewanella Oneidensis MR-1 with autunite mineral in bicarbonate-amended media solutions. The concentration of several elements such as U, calcium (Ca) and phosphorous (P) released as a result of autunite mineral biodissolution were determined as a function of time; changes in cell density and protein assay …

Controls On Benthic Microbial Community Structure And Assembly In A Karstic Coastal Wetland, Nicholas O. Schulte

FIU Electronic Theses and Dissertations

The assembly mechanisms underlying microbial community abundance, biotic interactions, and diversity over space and time are unresolved, particularly in benthic microbial mats distributed along environmental gradients. Experimental enrichment of nutrient-limited microbial mats from the Florida Everglades along a nutrient subsidy-salinity stress gradient stimulated autotrophic and heterotrophic metabolism, growth, and diversity independent of autotroph-heterotroph interactions across treatments and space. These results suggest spatial segregation of autotrophic and heterotrophic components within mats. Considering only the diatom component of Everglades mats over space and time, the subsidy-stress gradient controlled diatom compositional turnover at broad spatial scales while environmental and dispersal-based processes structured diatom …

Consequences Of Anthropogenic And Global Change On Orchids: An Emphasis On Biotic Interactions, Jason L. Downing

FIU Electronic Theses and Dissertations

Evidence suggests that human-driven changes to the earth are having clear and profound effects on many species, as well as the species with which they associate. Disruptions in the interactions between species can change the community structure, in turn changing the dynamics of entire ecosystems. The following dissertation examines how the impacts of climate change related events and invasive species may influence biotic interactions and impact orchid populations and range distributions. Here I quantify how orchid pollinators and mycorrhiza vary between species with different life histories, and between and within habitats. The results showed that orchids with wide range distributions …

Salinity Adaptation And The Contribution Of Parental Environmental Effects In Medicago Truncatula, Ken S. Moriuchi, Maren L. Friesen, Matilde A. Cordeiro, Mounawer Badri, Wendy T. Vu, Bradley J. Main, Mohamed Elarbi Aouani, Sergey V. Nuzhdin, Sharon Y. Strauss, Eric Jb Von Wettberg

Department of Biological Sciences

High soil salinity negatively influences plant growth and yield. Some taxa have evolved mechanisms for avoiding or tolerating elevated soil salinity, which can be modulated by the environment experienced by parents or offspring. We tested the contribution of the parental and offspring environments on salinity adaptation and their potential underlying mechanisms. In a two-generation greenhouse experiment, we factorially manipulated salinity concentrations for genotypes of Medicago truncatula that were originally collected from natural populations that differed in soil salinity. To compare population level adaptation to soil salinity and to test the potential mechanisms involved we measured two aspects of plant performance, …

Examination Of Surface Temperature Modification By Open-Top Chambers Along Moisture And Latitudinal Gradients In Arctic Alaska Using Thermal Infrared Photography, Nathan C. Healey, Steve F. Oberbauer, Robert D. Hollister

Department of Biological Sciences

Passive warming manipulation methodologies, such as open-top chambers (OTCs), are a meaningful approach for interpretation of impacts of climate change on the Arctic tundra biome. The magnitude of OTC warming has been studied extensively, revealing an average plot-level warming of air temperature that ranges between 1 and 3 °C as measured by shielded resistive sensors or thermocouples. Studies have also shown that the amount of OTC warming depends in part on location climate, vegetation, and soil properties. While digital infrared thermometers have been employed in a few comparisons, most of the focus of the effectiveness of OTC warming has been …

Many Species Risk Mountain Top Extinction Long Before They Reach The Top, Evan Rehm, Kenneth J. Feeley

Department of Biological Sciences

Analyses of topography show that mountains do not monotonically decrease in area with elevation as is commonly believed and that in reality land area often increases at higher elevations. This finding bodes well for the future of biodiversity since it means that in many parts of the world there are sufficient upslope areas for low- and mid-elevation species to migrate into as temperatures increase. However, more attention needs to be given to determining if migrating species can actually reach these expansive high-elevation areas. Many factors can prevent species from migrating upslope including stable ecotones. Often ecotonal boundaries are not set …