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Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Ray Enke Ph.D.
Part 2 of this in class exercise uses CyVerse Discovery Environment (DE) for the following:
- view the output files of FastQC analysis
- create custom data tracks from HISAT alignment files for visualization in the UCSC Genome Browser
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 1), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 1), Ray A. Enke
Ray Enke Ph.D.
This in class exercise demonstrates the basic features of the CyVerse Discovery Environment (DE) cyberinfrastructure and also provides a tutorial for setting up FastQC analysis of next generation sequencing reads as well as HISAT alignment of eukaryotic RNA-seq FASTQ files.