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Full-Text Articles in Life Sciences
Rna-Seq Bioinformatics Analysis Using Cyverse Discovery Environment, Ray A. Enke
Rna-Seq Bioinformatics Analysis Using Cyverse Discovery Environment, Ray A. Enke
Ray Enke Ph.D.
This slide deck gives an overview of FastQC and Kallisto psudoalignment RNA-seq analysis using the CyVerse Discovery Environment cyberinfrastructure platform.
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Ray Enke Ph.D.
Part 2 of this in class exercise uses CyVerse Discovery Environment (DE) for the following:
- view the output files of FastQC analysis
- create custom data tracks from HISAT alignment files for visualization in the UCSC Genome Browser
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 1), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 1), Ray A. Enke
Ray Enke Ph.D.
This in class exercise demonstrates the basic features of the CyVerse Discovery Environment (DE) cyberinfrastructure and also provides a tutorial for setting up FastQC analysis of next generation sequencing reads as well as HISAT alignment of eukaryotic RNA-seq FASTQ files.
Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Ray Enke Ph.D.
This in class exercise is designed to teach students about the basic features of CyVerse Discovery Environment (DE) as well as how to run FastQC and Trimmomatic steps of a general eukaryotic RNA-seq analysis pipeline using CyVerse DE apps.