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Bioinformatics

University of Nebraska - Lincoln

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

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Full-Text Articles in Life Sciences

Museum Metabarcoding: A Novel Method Revealing Gut Helminth Communities Of Small Mammals Across Space And Time, Stephen E. Greiman, Joseph A. Cook, Vasyl V. Tkach, Eric P. Hoberg, Damian M. Menning, Andrew G. Hope, Sarah A. Sonsthagen, Sandra L. Talbot Nov 2018

Museum Metabarcoding: A Novel Method Revealing Gut Helminth Communities Of Small Mammals Across Space And Time, Stephen E. Greiman, Joseph A. Cook, Vasyl V. Tkach, Eric P. Hoberg, Damian M. Menning, Andrew G. Hope, Sarah A. Sonsthagen, Sandra L. Talbot

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on host and parasite/pathogen dynamics. We developed a new technique to identify intestinal helminth parasites and applied it to shrews (Eulipotyphla: Soricidae) because they are ubiquitous, occupy diverse habitats, and host a diverse and abundant parasite fauna. Notably, we included museum specimens preserved in various ways to explore the efficacy of using metabarcoding analyses that may enable identification …


Finding Them Before They Find Us: Informatics, Parasites, And Environments In Accelerating Climate Change, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Kurt E. Galbreath, David Herczeg, Hugo H. Mejía-Madrid, S. Elizabeth Rácz, Altangerel Tsogtsaikhan Dursahinhan Jan 2014

Finding Them Before They Find Us: Informatics, Parasites, And Environments In Accelerating Climate Change, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Kurt E. Galbreath, David Herczeg, Hugo H. Mejía-Madrid, S. Elizabeth Rácz, Altangerel Tsogtsaikhan Dursahinhan

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

Parasites are agents of disease in humans, livestock, crops, and wildlife and are powerful representations of the ecological and historical context of the diseases they cause. Recognizing a nexus of professional opportunities and global public need, we gathered at the Cedar Point Biological Station of the University of Nebraska in September 2012 to formulate a cooperative and broad platform for providing essential information about the evolution, ecology, and epidemiology of parasites across host groups, parasite groups, geographical regions, and ecosystem types. A general protocol, documentation–assessment–monitoring–action (DAMA), suggests an integrated proposal to build a proactive capacity to understand, anticipate, and respond …


Transfer Of The United States National Parasite Collection [Announcement], Eric P. Hoberg, Anna J. Phillips Jan 2014

Transfer Of The United States National Parasite Collection [Announcement], Eric P. Hoberg, Anna J. Phillips

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

In 2013, an agreement was articulated between the United States Department of Agriculture/Agricultural Research Service (ARS) and the Smithsonian Institution to transfer the United States National Parasite Collection in its entirety (fluid specimens, slide specimens, frozen tissues and reprints) to the National Museum of Natural History (NMNH) in Washington, D.C. Current collections staff, including senior curator Dr. Eric P. Hoberg and support scientists/managers from the ARS will be transferred with the collection and with adjunct appointments in the NMNH will provide continuity and assistance for curation and accessibility during and after the relocation. New curatorial controls will be established under …


Anthropogenics: Human Influence On Global And Genetic Homogenization Of Parasite Populations, Dante S. Zarlenga, Eric P. Hoberg, Benjamin Rosenthal, Simonetti Mattiucci, Giuseppe Nascetti Jan 2014

Anthropogenics: Human Influence On Global And Genetic Homogenization Of Parasite Populations, Dante S. Zarlenga, Eric P. Hoberg, Benjamin Rosenthal, Simonetti Mattiucci, Giuseppe Nascetti

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

The distribution, abundance, and diversity of life on Earth have been greatly shaped by human activities. This includes the geographic expansion of parasites; however, measuring the extent to which humans have influenced the dissemination and population structure of parasites has been challenging. In-depth comparisons among parasite populations extending to landscape-level processes affecting disease emergence have remained elusive. New research methods have enhanced our capacity to discern human impact, where the tools of population genetics and molecular epidemiology have begun to shed light on our historical and ongoing influence. Only since the 1990s have parasitologists coupled morphological diagnosis, long considered the …


Foundations For An Integrative Parasitology: Collections, Archives, And Biodiversity Informatics, Eric P. Hoberg Jan 2002

Foundations For An Integrative Parasitology: Collections, Archives, And Biodiversity Informatics, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

Burgeoning awareness about biodiversity emphasizes the fundamental importance of museum collections and the contributions of systematists and taxonomists in documenting the structure and history of the biosphere. An essential role is served by this infrastructure in collecting, preparing, analyzing, and disseminating information about the specimens that represent species, document a range of complex biological associations from symbioses to parasitism, and form the tapestry and the myriad facets of biodiversity (e.g., Wilson, 2000). As parasitologists we can examine how we may contribute to this broader documentation and understanding of global biodiversity, and we can articulate and communicate our role as vital …