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Full-Text Articles in Life Sciences
Intro To Rna-Sequencing Lecture Slides, Ray A. Enke
Intro To Rna-Sequencing Lecture Slides, Ray A. Enke
Ray Enke Ph.D.
Rna-Seq Bioinformatics Analysis Using Cyverse Discovery Environment, Ray A. Enke
Rna-Seq Bioinformatics Analysis Using Cyverse Discovery Environment, Ray A. Enke
Ray Enke Ph.D.
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Ray Enke Ph.D.
- view the output files of FastQC analysis
- create custom data tracks from HISAT alignment files for visualization in the UCSC Genome Browser
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 1), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 1), Ray A. Enke
Ray Enke Ph.D.
Transcripity Split: Course-Based Rna-Seq Analysis Using The Ultrafast Kallisto-Sleuth Pipeline, Ray A. Enke
Transcripity Split: Course-Based Rna-Seq Analysis Using The Ultrafast Kallisto-Sleuth Pipeline, Ray A. Enke
Ray Enke Ph.D.
No abstract provided.
Finding Function In The Unknown, Kelly Boyd, Emma Highland, Amanda Misch, Amber Hu, Sushma Reddy, Catherine Putonti
Finding Function In The Unknown, Kelly Boyd, Emma Highland, Amanda Misch, Amber Hu, Sushma Reddy, Catherine Putonti
Catherine Putonti
Through high-throughput RNA sequencing (RNAseq), transcriptomes for a single cell, tissue, or organism(s) can be ascertained at a high resolution. While a number of bioinformatic tools have been developed for transcriptome analyses, significant challenges exist for studies of non-model organisms. Without a reference sequence available, raw reads must first be assembled de novo followed by the tedious task of BLAST searches and data mining for functional information. We have created a pipeline, PyRanger, to automate this process. The pipeline includes functionality to assess a single transcriptome and also facilitate comparative transcriptomic studies.
Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Genomics Rna-Seq Analysis Part 1-Cyverse De, Fastqc, Trimmomatic (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Ray Enke Ph.D.
Genomics Rna-Seq Analysis Part 2_ Kallisto Indexing And Quantification (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Genomics Rna-Seq Analysis Part 2_ Kallisto Indexing And Quantification (Updated 11/17), Ray A. Enke, Melika Rahmani-Mofrad
Ray Enke Ph.D.
Genomics Rna-Seq Analysis Part 3-Sleuth Data Visualization (Updated 11/17), Ray A. Enke, Scott Schumacker
Genomics Rna-Seq Analysis Part 3-Sleuth Data Visualization (Updated 11/17), Ray A. Enke, Scott Schumacker
Ray Enke Ph.D.
Rna Sequencing Analysis Of The Developing Chicken Retina, Christophe Langouet-Astrie*, Annamarie Meinsen*, Emily R. Grunwald*, Stephen Turner, Raymond A. Enke
Rna Sequencing Analysis Of The Developing Chicken Retina, Christophe Langouet-Astrie*, Annamarie Meinsen*, Emily R. Grunwald*, Stephen Turner, Raymond A. Enke
Ray Enke Ph.D.
Pathway Analysis Of Differentially Expressed Genes (Computational), Raymond A. Enke
Pathway Analysis Of Differentially Expressed Genes (Computational), Raymond A. Enke
Ray Enke Ph.D.
- Conduct gene ontology (GO) pathway analysis of statistically and biologically significant differentially expressed genes (DEGs)
- Sort and organize lists of DEGs in MS Excel spreadsheets based on biological function
Analysis Of Rna-Seq Alignments Using Dna Subway Green Line (Computational), Raymond A. Enke
Analysis Of Rna-Seq Alignments Using Dna Subway Green Line (Computational), Raymond A. Enke
Ray Enke Ph.D.
- Review basic steps of RNA-Seq bioinformatics analysis in DNA Subway Green Line
- View and run basic analytics of RNA-Seq data set in DNA Subway Green Line
Creating Custom Rna-Seq Data Tracks In The Ucsc Genome Browser (Computational), Raymond A. Enke
Creating Custom Rna-Seq Data Tracks In The Ucsc Genome Browser (Computational), Raymond A. Enke
Ray Enke Ph.D.
- Create your own custom data tracks in the UCSC Genome Browser
- Visualize RNA-Seq TopHat alignment data as custom tracks in the UCSC Genome Browser
- Integrate RNA-Seq alignment data with other genome-wide data sets
Distinct Cardiac Responses To Heat Stress Between Two Broiler Lines Identified By Transcriptome Analysis, Jibin Zhang, Carl J. Schmidt, Susan J. Lamont
Distinct Cardiac Responses To Heat Stress Between Two Broiler Lines Identified By Transcriptome Analysis, Jibin Zhang, Carl J. Schmidt, Susan J. Lamont
Jibin Zhang
Integration Of Rna-Seq Data Analysis Into Undergraduate Lab Teaching Modules, Raymond A. Enke
Integration Of Rna-Seq Data Analysis Into Undergraduate Lab Teaching Modules, Raymond A. Enke
Ray Enke Ph.D.