Life Sciences Commons^™

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

The Forgotten Cousin In Freshwater Community Ecology: Tidal Freshwater Wetlands, Jack R. Mclachlan

Electronic Theses and Dissertations

Tidal freshwaters are unique in their placement in the landscape, forming where freshwater riverine flows are sufficient to overwhelm the saline water of the incoming tide, but not strong enough to suppress tidal water-height fluctuations. Tidal freshwaters and their wetlands have been overlooked by freshwater and marine researchers alike; neither discipline considers tidal freshwaters to fall under their purview. Invertebrate communities in tidal freshwaters are thought to be species depauperate; the consensus is that they support fewer taxa than nearby non-tidal freshwaters, but little is known about how these communities are structured. This study investigated how tidal hydrology, an atypical …

Salvinia Molesta: An Assessment Of The Effects And Methods Of Eradication, Arti Lal

Master's Projects and Capstones

Salvinia molesta is an invasive aquatic fern. It is now the second worse aquatic invader in the world. Since the 1930s, it has invaded most tropical and some temperate countries. S. molesta plants grow vegetatively and can increase in size rapidly. S. molesta can form thick mats of up to 1-meter-thick. There are a number of ways these thick mats negatively affect the environment: 1) reduce light to benthic organisms, 2) reduce oxygen in the water column for other organisms, 3) accumulate as organic matter at the bottom of the water column, 4) decrease nutrients for other organisms, and 5) …

The Impacts Of Climate Change On Communities Of Fungi In Boreal Peatlands, Asma Asemaninejad Hassankiadeh

Electronic Thesis and Dissertation Repository

Peatlands have an important role in global climate change through sequestration of atmospheric CO₂. Climate change is already affecting these ecosystems, including both above- and below- ground communities and their functions. Fungi play a central role in these communities. As a result, there is concern that altered fungal community function may turn peatlands from carbon sinks to carbon sources, greatly exacerbating the impacts of climate change. In order to gain a better insight into effects of climate change on the structure and function of these carbon sequestrating ecosystems, this thesis focuses on diversity and structure of fungal communities …

Effects Of Non-Consumptive Recreation And Environmental Factors On Arkansas State Park Biodiversity, Bennett P. Grooms

Theses and Dissertations from 2016

State parks serve a dual conservation role by offering protected habitat to many species while also promoting recreational use of natural resources. Non-consumptive recreation activities, however, have long-term negative effects on the behavior, physiology, and reproductive success of state park biotic communities. The purpose of my research was to investigate the possible synergistic effects of non-consumptive trail use, environmental factors, and trail design factors on avian, mesocarnivore, and woody vegetation communities in Arkansas state parks. During 18 May – 7 August 2015, I conducted avian point counts, trail user counts, set camera traps, and sampled vegetation at 227 points on …

How Do Designers Of The Built Environment Attempt To Make Ecological Sustainability Sensory Legible?, Carly L. Bartow

Architecture Undergraduate Honors Theses

This paper attempts to provide a theoretical framework for making ecosystem function and ecologically sustainable design more perceptible or sensible to people through architecture and the built environment. Design features of the Bertschi School Science Wing and the Bullitt Center in Seattle, Washington are incorporated to illustrate the sensory legibility of ecological sustainability criteria.The criteria are available to designers to help educate a building's occupants on environmentally sustainable design and motivate more sustainable behavior.

Understanding Stakeholder Attitudes And Involvement In Habitat Conservation Plans And The Endangered Species Act, Kyle Andrew Rodgers

Masters Theses

The Endangered Species Act (ESA), established in 1973, was a landmark piece of environmental legislation and remains the standard for endangered species conservation. Implementation of the ESA has often been framed as pitting economic development against species conservation, inciting passions for and against endangered species conservation. The strength of opposing public opinions is highlighted by high-profile controversies such as those around the snail darter, northern spotted owl and the greater sage grouse. In an attempt to reduce conflict, the US Fish and Wildlife Service (USFWS) increasingly seeks to utilize collaborative, stakeholder-based processes that address stakeholder interests, attitudes, and values.

In …

Approaches To Arthropod Conservation : Landscape Genetics, Community Assessment, And Prediction Of Extinction Risk., Victoria Annette Prescott

Electronic Theses and Dissertations

Although urbanization is a leading cause of species extinction throughout the world, the impact of urban development on arthropods is little studied and, as a result, poorly understood. I used three distinct approaches to studying arthropod conservation in North America. First, I used landscape genetics techniques to study the impact of urbanization on gene flow among populations of Rabidosa rabida, the rabid wolf spider. While gene flow was not detrimentally reduced, urban development correlated with a reduction in migration rates among populations, and to my knowledge, this is the first study to document isolation by resistance in spiders. Next, …

Improving Conservation Efforts Through A Better Understanding Of Forest Elephant Ecology, The Impacts Of Threats On Elephants And Freshwater Fisheries In Northern Congo, Roger Patrick Boundja

Doctoral Dissertations

IMPROVING CONSERVATION EFFORTS THROUGH A BETTER UNDERSTANDING OF FOREST ELEPHANT ECOLOGY, THE IMPACTS OF THREATS ON ELEPHANTS AND FRESHWATER FISHERIES IN NORTHERN SEPTEMBER 2016 ROGER PATRICK BOUNDJA, B.Sc. FORESTRY, MARIEN NGOUABI UNIVERSITY, BRAZZAVILLE MSc. UNIVERSITY OF CAPE TOWN PhD. UNIVERSITY OF MASSACHUSETTS AMHERST Directed by: Professor Curtice R. Griffin Catch data, including fish numbers, length-weight were collected during a multi-mesh Gillnet fisheries-independent survey in 2007-2008, and fisheries-dependent mixed gear surveys in 2009-2010 and 2015 across 400km stretch of the Sangha River located in the Sangha Tri-National. Overall, very high species richness (Chao 2 mean=250, SD=16.15) and diversity index (Simpson Inverse …

Expansion Of And Reclassification Within The Family Lachnospiraceae, Kelly N. Haas

Doctoral Dissertations

Many of the taxa in the family Lachnospiraceae are currently misclassified as Clostridium spp. Here attempt to rectify many of these issues, beginning with an in-depth genomic and physiologic analysis of Clostridium methoxybenzovorans, culminating in the assertion that is a heterotype of Clostridium indolis, followed by reclassification of the broader group in which this organism resides. We propose two novel genera, Lacriformis and Enterocloster, to reclassify this clade, this includes reclassification of Clostridium sphenoides, Clostridium indolis, Clostridium saccharolyticum, Clostridium celerecrescens, Clostridium xylanolyticum, Clostridium algidixylanolyticum, Clostridium aerotolerans, Clostridium amygdalinum, and …

Takeover On The Tallgrass Prairie: How Lespedeza Cuneata Establishes Dominance, Morgan Rae Walder

Theses and Dissertations

Invasion ecology aims to study mechanisms by which invasive species are able to enter, establish, and spread within an ecosystem. This study analyzed Darwin’s naturalization and the biotic resistance hypotheses as the most likely explanations for invasion by an exotic legume, Lespedeza cuneata, into a tallgrass prairie. Darwin’s naturalization hypothesis posits that exotic species are less able to establish in communities that have related species, because similarity in morphology and function promotes intense competition for resources. The biotic resistance hypothesis states that competitors, herbivores, and pathogens already present in the community limit the colonization, naturalization, and persistence of invaders, therefore …

Comparative Population Genomics And Speciation Of Snakes Across The North American Deserts, Edward A. Myers

Dissertations, Theses, and Capstone Projects

Understanding the process of speciation is of central interest to evolutionary biologists. Speciation can be studied using a phylogeographic approach, by identifying regions that promote lineage divergence, addressing whether speciation has occurred with gene flow, and when extended to multiple taxa, addressing if the same patterns of speciation are shared across codistributed groups with different ecologies. Here I examine the comparative phylogeographic histories and population genomics of thirteen snake taxa that are widely distributed and co-occur across the arid southwest of North America. I first quantify the degree to which these species groups have a shared history of population divergence …

Phylogeny, Systematics And Biogeography Of Short-Tailed Opossums (Didelphidae: Monodelphis), Silvia E. Pavan

Dissertations, Theses, and Capstone Projects

Short-tailed opossums (genus Monodelphis) comprise the most species-rich genus of New World marsupials, with 25 currently recognized species. Monodelphis comprise small, terrestrial species collectively widespread in South America, which makes the group potentially informative about biogeographic processes that have shaped the continental fauna. The genus exhibits striking variation in several phenotypic characters, notably pelage coloration, behavior, and reproductive strategies. This diversity is unique among Neotropical marsupials, and makes the group particularly interesting to investigate the evolution and the adaptive significance of phenotypic trait variation. Despite this potential, missing knowledge on phylogeny and basic taxonomy precludes broader studies on evolution …

Agaricomycetes Of Ontario Tallgrass Prairies, Christopher R. J. Hay

Electronic Thesis and Dissertation Repository

This study provides the first characterization of the Agaricomycetes of Ontario tallgrass prairies, assesses the influence of various environmental factors, and compares results of aboveground mushroom surveys with belowground high-throughput DNA sequencing. Overall, the Mycenaceae, Ceratobasidiaceae and Polyporaceae were the most abundant, and the Clavariaceae, Entolomataceae and Sebacinaceae the richest in species. Position along a transect (geographic region) was the primary factor differentiating Agaricomycete composition of sites whereas tillage history and soil organic carbon content were secondary. The Hygrophoraceae and Clavariaceae were associated with pristine sites, and Minimedusa spp. associated with tillage. The belowground method captured most of the minor …

Phylogenetic Relationships And Evolution Of Snakes, Alex Figueroa

University of New Orleans Theses and Dissertations

Snakes represent an impressive evolutionary radiation of over 3,500 widely-distributed species, categorized into 515 genera, encompassing a diverse range of morphologies and ecologies. This diversity is likely attributable to their distinctive morphology, which has allowed them to populate a wide range of habitat types within most major ecosystems. In my first chapter, I provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61). I then …

Breeding Season Avian Community Composition And Prey Availability In Eucalyptus And Slash Pine Plantations Of Southwestern Louisiana, Elizabeth J. Messick

Electronic Theses and Dissertations

The increased demand for wood products related to industries such as bioenergy and paper has resulted in a need for a consistent supply of raw materials. Eucalyptus (Eucalyptus spp.) plantations have the potential to boost wood production for pulpwood and biomass feedstocks. Species characteristics such as rapid, indeterminate growth, coppice regrowth, resistance to disease and insects, and tolerance of a range of environmental conditions make these species successful short-rotation woody crops (SRWCs). Camden white gum (Eucalyptus benthamii), a more cold tolerant species, has made management of eucalyptus plantations viable in southern portions of the United States such …

Do Novel Weapons That Degrade Mycorrhizal Mutualisms Explain Invasive Species Success?, Philip L. Pinzone Mr.

Biology Theses

Invasive plants often dominate novel habitats where they did not co-evolve with local species. Several hypotheses suggest mechanisms that explain increased exotic plant success, including 'novel weapons' and 'degraded mutualisms'. Japanese knotweed (Fallopia japonica) and European buckthorn (Rhamnus cathartica) are widespread plant invaders in North America that can dominate ecosystems. The goal of this study is to test whether these impacts are more consistent with novel weapons or degraded mutualism hypotheses. I examine tree seedling recruitment, (germination and initial survival) growth, (biomass) and mycorrhizal invasion (AMF content) as a function of F. japonica and R. cathartica …

Investigating Genetic Differences Between Strains Of Janthinobacterium Lividum On Salamanders And In Their Environment, Rhiannon E. Black

Chancellor’s Honors Program Projects

No abstract provided.

Effects Of Invasive Shrub Honeysuckle (Lonicera Maackii) And Forest Composition On Bird Communities In Woodland Stands., Katie Rae Lynch

Electronic Theses and Dissertations

Invasive species pose a threat to aquatic and terrestrial ecosystems by decreasing biodiversity (Didham et al. 2005). Amur bush honeysuckle (Lonicera maackii) has typically reduced native plant diversity and altered animal communities by influencing animal abundance and activity (Collier and Vankat 2002). This study was intended to determine whether honeysuckle density or other characteristics of forested stands influence avian diversity, whether impacts are seasonally dependent, and whether correlations exist between attributes of forested stands and honeysuckle density. In order to test the hypotheses, thirteen forest stands within the Louisville Metropolitan Area were selected. They had similar tree composition …

Hotspots, Extinction Risk And Conservation Priorities Of Greater Caribbean And Gulf Of Mexico Marine Bony Shorefishes, Christi Linardich

Biological Sciences Theses & Dissertations

Understanding the status of species is important for allocation of resources to redress biodiversity loss. Regional organizations tasked with managing threats to the 1,360 marine bony shorefishes of the Caribbean and Gulf of Mexico would benefit from a delineation of conservation priorities. However, prior to this study, conservation status was known for only one quarter of these shorefishes. Extinction risk assessment under IUCN Red List Criteria is a widely-used, objective method to communicate species-specific conservation needs. Data were collated on each species’ distribution, population, habitats and threats and experts at three Red List workshops assigned a global level extinction risk …

Effect Of The 2013-2015 California Drought On Small Mammal Abundance And Diversity In Chaparral, Oak Woodland And Riparian Habitats, Nicole Desideri

Biological Sciences

Long-term biodiversity surveys are a useful tool for assessing the impacts of stochastic events on wildlife and their communities. A recent stochastic event to affect the state of California is the historic 2013-2015 drought. This drought, described as a one-in-one-thousand year event, brought precipitation to a historic low; the statewide rainfall reaching 34% below average (Swain et al. 2014). While humans are feeling the impact of this water shortage, the effects on native ecosystems and wildlife populations are poorly documented. Baseline small mammal biodiversity data collected in 2011, before the drought, allows us the opportunity to study the impacts of …

Green Roofs And Urban Biodiversity: Their Role As Invertebrate Habitat And The Effect Of Design On Beetle Community, Sydney Marie Gonsalves

Dissertations and Theses

With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, and changes in biodiversity. However, urban green spaces, including green roofs, can also provide important pools of biodiversity and contribute to regional gamma diversity, while novel species assemblages can enhance some ecosystem services. Green roofs may also mitigate species loss in urban areas and have been shown to support a surprising diversity of invertebrates, including rare and endangered species. In the first part of this study I reviewed …

The Mexican Water Forest: Benefits Of Using Remote Sensing Techniques To Assess Changes In Land Use And Land Cover, Maria F. Lopez Ornelas

Master's Projects and Capstones

In the past 30 years, anthropogenic activities like urbanization, agriculture, road fragmentation and deforestation have resulted in changes in the land use and land cover (LULC) in the Mexican Water Forest. Due to the important ecosystem services, and the natural resources this forest provides, in Mexico, it has become increasingly necessary to use new technologies and tools to support the planning, implementation and integration of forest management and conservation plans, as well as ecological and socioeconomic analysis of this ecosystem. Remote Sensing techniques and Geographic Information Systems (GIS) have been a true technological and methodological revolution in the acquisition, management …

Characterization Of The Marine Sponge Amphimedon Compressa Microbiome Across A Spatial Gradient, Renee Michelle Potens

HCNSO Student Theses and Dissertations

Diverse and ecologically important microbial communities (microbiomes) are symbiotic within marine sponges. In this study, the microbiome of Amphimedon compressa from three sample locations (Broward and Dade Counties, Southeast Florida, USA and the Southern Caribbean, Bocas del Toro, Panama) is characterized using 16S rRNA Illumina sequencing. The predominant taxa are Proteobacteria and Cyanobacteria, as expected for Low Microbial Abundance sponges, accounting for over 53% of the total microbiome community. The numbers of Operational Taxonomic Units (OTUs) decrease from Broward County (2,900) to Dade County (2,300) and then Bocas del Toro (1,200). The correlates to a decreasing north-south gradient of …

Preserving Biodiversity For A Climate Change Future: A Resilience Assessment Of Three Bay Area Species--Adenostoma Fasciculatum (Chamise), Arctostaphylos Canescens (Hoary Manzanita), And Arctostaphylos Virgata (Marin Manzanita), Alison S. Pollack

Master's Projects and Capstones

Anthropogenic climate change is an undeniable threat to the future of the natural world and human civilization. These shifts will have profound impacts on vegetation, especially for species endemic to isolated regions or sensitive to climate change factors. However, species resilience can predict success into the next century. Resilience is defined as the ability to withstand climate change factors, whereas vulnerability is defined as susceptibility to climate induced stress or damage.

Chaparral and coastal scrub ecosystems within the Bay Area of California provide a unique context for examining resilience, as many species are adapted to high temperatures, drought, and wildfire—all …

Tropical Trees As Islands: Diversity Accumulation Of Armored Scale Insects (Hemiptera: Diaspididae) On Trees As A Function Of Forest Age, Hannah Shapiro

Undergraduate Honors Theses

Armored scale insects (Hemiptera: Diaspididae) are some of the most invasive insects in the world. These cryptic plant parasites are most often encountered in managed agricultural ecosystems, but very little is known about their distribution, abundance, and diversity in tropical rainforest canopies, where they are likely to have their highest diversity. Because these ubiquitous insects are extreme generalists with undirected dispersal, their diversity (alpha and beta) accumulation can conceivably be modeled according to tenets derived from island biogeography theory. For example, one expectation is that older established trees should boast a higher species diversity and abundance than younger ones. Other …

Revelation Of Yin-Yang Balance In Microbial Cell Factories By Data Mining, Flux Modeling, And Metabolic Engineering, Gang Wu

McKelvey School of Engineering Theses & Dissertations

The long-held assumption of never-ending rapid growth in biotechnology and especially in synthetic biology has been recently questioned, due to lack of substantial return of investment. One of the main reasons for failures in synthetic biology and metabolic engineering is the metabolic burdens that result in resource losses. Metabolic burden is defined as the portion of a host cells resources either energy molecules (e.g., NADH, NADPH and ATP) or carbon building blocks (e.g., amino acids) that is used to maintain the engineered components (e.g., pathways). As a result, the effectiveness of synthetic biology tools heavily dependents on cell capability to …

The Origin And Expansion Of The Eastern Red Fox, Adrienne Egge Kasprowicz

University of New Orleans Theses and Dissertations

When new populations are first identified in a region there are multiple potential sources: introduction of a non-native species, extra-range expansion of a nearby population, or demographic growth of a previously unnoticed species. Red foxes were absent or rare in the mid-eastern portion United States until the late 1800s. Their origins potentially include natural population increase/expansion, translocations from Europe, and, eventually, 20th century fur farming. In this study I attempt to identify the relative impact of native expansion versus human mediated introductions of both colonial era European foxes and early 20^th century fur-farm foxes on the establishment of red …

Sensory Modalities Underlying The Escape Response Of The Cricket, Acheta Domesticus, To Looming Stimuli, Ariel M. Childs

Senior Honors Projects, 2010-2019

In order to prevent injury or capture by a predator, animals have evolved escape behavior. Despite offering a more realistic, multimodal, approximation of an approaching predator, looming stimuli have rarely been used to evoke escape behavior in crickets. Wind stimuli, however, have been used on a variety of insects, including crickets where it has been found that direction of escape is directly correlated to the angle of incoming wind stimuli. Wind stimuli are detected by sensilla trichodea, small filiform hairs covering the cerci of crickets, locusts and cockroaches. Despite having other complex sensory systems, such as antennae and vision, …

The Influence Of Beached Harmful Algal Blooms On Terrestrial Arthropods On The Shore Of Lake Erie, Nadejda Mirochnitchenko, Kevin E. Mccluney

Honors Projects

Marine primary inputs, such as sea wrack and algae, offer a great niche for insects and other animals to exploit. The existence of a similar niche on the coast of lakes has received less attention. To complicate matters, many freshwater systems are seeing increases in proliferation of toxic and non-toxic cyanobacteria blooms. This study examined patterns in lake shore terrestrial arthropod abundance, diversity, and community composition across gradients of beached algae, with varying toxicity. We detected water microcystin effects on arthropod richness in survey three, beached material effects on Shannon’s Diversity in survey two, and water microcystin effects on the …