Life Sciences Commons^™

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Understanding The Importance Of Intermittently Fragmented Stream Habitat For Isolated Westslope Cutthroat Trout (Oncorhynchus Clarki Lewisi) In The Colville National Forest, Washington, Forrest Michael Carpenter

Dissertations and Theses

Climate change and anthropogenic effects have vastly reduced Westslope Cutthroat Trout (Oncorhynchus clarki lewisi, WCT) habitat throughout their range, including the Colville National Forest in northeastern Washington where this study was conducted. Many native salmonid populations have declined in abundance since the early 1900s due to a variety of climate- and human-driven forces. Westslope Cutthroat Trout are especially sensitive to habitat loss or degradation and to climate change. Together, climate change, habitat degradation, and non-native salmonid invasions are contributing to increasingly fragmented WCT populations. Ongoing and predicted future warming trends are expected to further fragment these populations and …

Effective Tandem Hoop Net Sampling Effort For Evaluation Of Channel Catfish Populations In Reservoirs, Philip B. Malone

Theses and Dissertations from 2016

Channel Catfish Ictalurus punctatus have an important role in Arkansas’s commercial and recreational fisheries. This importance promoted sampling strategy investigations for obtaining information that assist with future management decisions. My study focused on determining effective sampling effort and sample size requirements needed for detecting changes in relative abundance within Channel Catfish populations, and explored relationships between catch per unit effort (CPUE) and reservoir habitat characteristics. My study was conducted during the spring of 2014 in six reservoirs (Lake Nimrod, Lake Overcup, Lake Catherine, De Queen Lake, Lake Erling, and Lake Columbia). General stock assessments consisting of length frequency distributions, growth …

Gonadal Intersex In Teleosts: Mechanisms, Molecular Biomarkers And Diagnostic Assays, Ahmed M.E. Abdel-Moneim Mohamed

Open Access Dissertations

Natural and synthetic estrogenic and androgenic compounds are continuously released into aquatic ecosystems. Exposure of teleost fishes to these contaminants can negatively impact sex differentiation and reproductive output. Specifically, development of gonadal intersex in gonochoristic (fixed sex) fish species has been studied extensively in relation to exposure to this class of compounds. The main objectives of this dissertation were to: 1) conduct field and laboratory studies to investigate the molecular signaling pathways behind the development of gonadal intersex; and 2) establish molecular biomarkers and assays for testing the ability of environmental pollutants to develop this condition using a battery of …

Bloom Or Bust: Retrospective Analysis Of The Giant Jellyfish, Nemopilema Nomurai (Scyphozoa: Rhizostomeae), Ecology In The East Asian Marginal Seas, Naomi Yoder

Master's Theses

The Giant Jellyfish, Nemopilema nomurai, is a large-bodied bloom-forming jellyfish that occurs in the semi-enclosed basins of the East Asian Marginal Seas. N. nomurai has bloomed more frequently in the past 20 years than in any period previously recorded. In Japan, recent N. nomurai blooms were responsible for millions of dollars in lost revenue and equipment damage to commercial fisheries alone. This study statistically analyzed 21 environmental factors in connection with N. nomurai occurrence (using occurrence as a proxy for blooms). Eight factors resulted in a statistically significant or marginally significant (p ≤ 0.10), linear or non-linear relationship with …

Regional Recruitment Dynamics And Seasonal Ecology Of Juvenile Bluefish (Pomatomus Saltatrix), David G. Stormer

Doctoral Dissertations

Recruitment in fishes, defined as the survival of a cohort through the first year of life, can be highly variable and affected by small changes in biological and physical factors. Much of the historical focus into the sources of recruitment variability has concentrated on the larval stage, but recent attention has shifted to the relatively longer juvenile period. Spawning behavior that results in the production of multiple cohorts over time and space within a year-class may dampen recruitment variability by decreasing natural mortality risk. The bluefish (Pomatomus saltatrix) is a migratory marine species that produces multiple cohorts of …

Ecological Consequences Of Lost Anadromous Forage Fish In Freshwater Ecosystems, Steven R. Mattocks

Masters Theses

Beginning in the early 1600s, dam construction in New England obstructed anadromous fish access to spawning grounds during migration. As a result, anadromous forage fish populations have declined, which has impacted freshwater, marine, and terrestrial ecosystems. To determine the impacts of dams on anadromous forage fish and freshwater ecosystems, I used historical and current data to estimate population changes in alewives (Alosa pseudoharengus) from 1600-1900. A significant reduction in spawning habitat occurred in New England as a result of 1,642 dams constructed between 1600 and 1900, resulting in 14.8% and 16.6% lake and stream habitat remaining by 1900, …

River Herring Conservation In Freshwater: Investigating Fish Reproductive Success And The Educational Value Of Citizen Monitoring Programs, Meghna Marjadi

Masters Theses

Over the last century anadromous alewife (Alosa psuedoharengus) and blueback herring (Alosa aestivalis), collectively called river herring, suffered drastic declines throughout their range from Newfoundland (Canada) to North Carolina (USA). A 2011 petition to include river herring in the Endangered Species Act (ESA) was rejected, partly due to inadequate information towards identifying coast-wide population status. Additionally, knowledge gaps were identified with basic ecology of the river herring life cycle in freshwater, including species reproductive strategies. In Chapter 2, I investigated how body size, spawning arrival time, and sex influence river herring reproductive success. I collaborated with …

Whiting Events Off Southwest Florida: Remote Sensing And Field Observations, Jacqueline Long

USF Tampa Graduate Theses and Dissertations

“Whiting” is a term used to describe a sharply defined patch of water that contains high levels of suspended, fine-grained calcium carbonate (CaCO₃). These features are named for their bright (at times white) appearance when compared to surrounding waters, and have been found to occur globally, persisting for multiple consecutive days. Although whitings have been widely studied using chemical, biological, geological, and physical techniques, there has been little effort to document their spatio-temporal distributions in a systematic way, not to mention the lack of consensus on what generates whitings and allows them to persist for days to weeks …

Understanding The Impact Of Commercial Harvest On White Suckers (Catostomus Commersonii) In Maine, Megan A. Begley

Electronic Theses and Dissertations

The State of Maine issues an unlimited number of commercial permits for the harvest of White Suckers Catostomus commersonii in Maine’s inland waters. The fishery provides a necessary source of fresh lobster Homarus americanus bait to coastal communities at a time when other bait sources are scarce. The impacts of the increasing number of permits and subsequent numbers of fishermen on the white sucker population is unknown. The Maine Department on Inland Fisheries and Wildlife (MDIFW) has closed a number of waters due to concerns that overfishing and incidental catch of other fish species may occur.

In Chapter 1, we …

A Landscape Approach To Determining And Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing And Growth Patterns Prior To Ocean Entry, Amelia Lee Johnson

Dissertations and Theses

Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period …

Burt Lake Watershed Planning Project: Biological Management Plan, Jenna Lyons

Honors Projects

In order to provide a management plan for Burt Lake, a survey was conducted from July to August in which potential habitat was surveyed for the reintroduction of Lake Sturgeon (Acipenser fulvescens). This was done so by evaluating physical parameters of Burt Lake and the surrounding tributaries, presence and absence of invasive plants and unknown algae, and presence of crayfish. For sturgeon habitat, sediment and physical properties (light, temperature, pH, turbidity, dissolved oxygen, conductivity) were sampled on 14 sites in Burt Lake . Similar measurements and samples were also taken in 3 sites on each of the surrounding tributaries, with …

Shortnose Sturgeon (Acipenser Brevirostrum) Spawning Potential In The Penobscot River, Maine: Considering Dam Removals And Emerging Threats, Catherine Johnston

Electronic Theses and Dissertations

Dam removals from the Penobscot River in Maine restored access to freshwater habitat critical for the life cycle of endangered shortnose sturgeon. Prior to the dam removals, shortnose sturgeon spawning activity had not been documented. Instead, evidence suggested that individuals emigrated from the Penobscot River to spawn in the Kennebec complex, 140 km away. A central question of this thesis was whether spawning activity would commence in the first two years following dam removal. Consistent with pre-dam removal movement patterns determined using acoustic telemetry, the majority (78%) of tagged individuals emigrated from the Penobscot River at some point over the …

Development Of An Automated Detection System For Nitrite In Aquatic Environments, Tim Schierenbeck

Theses and Dissertations

The main objective of the project is to develop an automated nitrite sensor for use in aquatic environments, and more specifically for use in recirculating aquaculture systems (RAS), where monitoring can help sustain a controlled environment, protect against nitrite intoxication, and promote fish health. Detecting nitrite manually with semi-quantitative colorimetric test kits, although inexpensive and simple, is prone to inter-user variability and poor sensitivity. An automated nitrite sensor has potential to provide higher resolution measurements at both concentration and time scales and can serve as a research tool for the study of filtration systems essential in maintaining a healthy RAS …

Movement, Habitat Use, Reproduction, And Commercial Harvest Of Paddlefish In Lake Dardanelle, Arkansas, Adam Geik

Theses and Dissertations from 2016

Paddlefish Polyodon spathula are a valuable commercial species throughout much of their range including Lake Dardanelle, one of the most important commercial paddlefish fisheries in Arkansas. While fecundity, mortality, and age and growth of paddlefish stocks in Lake Dardanelle have been assessed previously, information on their movements, habitat utilization, and commercial harvest rates is lacking. To help fill this information gap, 39 paddlefish were tracked a minimum of once per month from October 2014 through September 2015. Habitat selection was determined for eight macrohabitat types and four bathymetric habitat types by comparing percent usage to percent availability. Four high-use (≥10%) …

Assessment Of Benthic Habitat Quality In Lower Green Bay, Lake Michigan With Special Regard To Potential Hexagenia Recolonization, Christopher Michael Groff

Theses and Dissertations

With environmental remediation in the Great Lakes, Hexagenia have recovered or are recovering in systems from which they were once extirpated. An active Hexagenia recovery does not appear to be taking place in lower Green Bay. This study first examines the highly fluidized nature of lower Green Bay sediment as a possible cause for their lack of recovery due to nymphs’ potential inability to construct and maintain burrows essential to the completion of their life cycles. Hexagenia bilineata nymphs collected from the Upper Mississippi River were distributed into oxygenated aquaria containing substrates from lower Green Bay or the Upper Mississippi …

Growth And Reproduction Of Southern Flounder (Paralichthys Lethostigma) In The North-Central Gulf Of Mexico, Morgan Marie Corey

Master's Theses

Southern Flounder Paralichthys lethostigma is the most commonly harvested flatfish in the north-central Gulf of Mexico (GOM) and supports a major inshore recreational fishery, yet knowledge of the species’ life history is greatly limited. The objective of this research was to describe the growth and reproduction of Southern Flounder in the Mississippi stock. Fish were collected during September 2014 to March 2016 using primarily recreational fishing techniques. Otoliths (n = 313) were sectioned to estimate age, and multiple length-at-age models were fit to total length (TL, mm) and age estimate (y) data. Gonadal tissue samples (n = 221) …

Development Of Genomic Resources For The Evaluation Of Red Snapper, An Emerging Species Candidate For Marine Aquaculture And Stock Enhancement, Adrienne Elise Norrell

Master's Theses

The northern red snapper (Lutjanus campechanus) is a highly targeted reef fish candidate for marine aquaculture and stock enhancement in the southern United States. This work aimed to develop genomic resources for the genetic management of aquaculture programs and to investigate population structure using high-throughput sequencing technologies. Eighty-four new microsatellite markers were developed through screening of Illumina paired-end sequencing reads. Microsatellite loci and Single Nucleotide Polymorphisms (SNPs) generated through Restriction Site Associated DNA (RAD) sequencing were assayed in 5 outbred full-sib families to construct a high-density linkage map of the red snapper genome. The map consists of 7,964 …

Diversity And Distribution Of Diatom Endosymbionts In Amphistegina Spp. (Foraminifera) Based On Molecular And Morphological Techniques, Kwasi H. Barnes

USF Tampa Graduate Theses and Dissertations

Diatoms associated with foraminifers of the genus Amphistegina were assessed using a combination of morphological and molecular techniques. These included: 1) microscopic identification of diatoms cultured from the host, 2) sequencing of portions of the small subunit of the ribosomal RNA gene (18S) and the large subunit of the ribulose-1,5-bisphosphate carboxylase/oxygenase [i.e., RubisCO] gene (rbcL) from DNA extracted directly from the Amphistegina hosts and also from diatoms cultured from these hosts, and 3) denaturing gradient gel electrophoresis (DGGE) profiles of rbcL and internal transcribed spacer 1 (ITS1) PCR amplicons from DNA extracted directly from …

Design Of An Aquaponics System, Jesse Birsinger

BioResource and Agricultural Engineering

This Senior Project discusses the design, cost analysis, and evaluation of an aquaponics system. The system incorporates aquaculture and hydroponics to create a source of fish protein and various crops. The system was sized based off a minimum requirement of pounds of fish available per week. The system designed is capable of generating 2080 pounds of catfish, and 16,000 pounds of produce annually. The first year of operation the system will operate at a loss due to the significant cost of the components of the system, however, the project is projected to generate a minimum stream of revenue of $10,600 …

Ménage À Trois In The Atlantic Brief Squid (Lolliguncula Brevis): Prior Presence Affects Mate Choice, Rachel A. Schlessinger

Theses and Dissertations

Lolliguncula brevis given prior presence experienced a significantly greater number of contacts with opposite sex squid than rivals. Males given prior presence also spent significantly more time in proximity to females than rivals. This suggests that for both female and male Atlantic brief squid, having prior presence influences mating behavior.

Assessment Of A Hatchery Based Rainbow Smelt Supplementation Effort, Andrew O'Malley

Electronic Theses and Dissertations

Rainbow Smelt (Osmerus mordax) are an important fish distributed throughout northeastern North America with both anadromous and landlocked populations. Abundance, size at age, and maximum size vary widely among populations and life histories. In order to compare anadromous and landlocked populations, we collected spawning adults in 2014 from four anadromous and three landlocked populations. Scales and otoliths from the anadromous fish were examined and compared for estimates of bias and precision in ageing. Analysis of both scales and otoliths provided age estimates that were acceptable, but estimates from scales were more precise and had less bias. Otoliths were …

The Effect Of Water Quality On The Survival And Fitness Of Brook Trout (Salvelinus Fontinalis) Eggs, Alevins And Fry In Aquaculture And Deep Springs Along The South River In Waynesboro, Va, Thomas D. Teears

Masters Theses, 2010-2019

Brook trout populations have been extirpated in many Virginia streams due to poor water quality thus establishing populations of brook trout for recreational fishing is an important priority of fisheries management. The ability of a stream to protect developing brook trout (Salvelinus fontinalis) eggs and larval fish from adverse effects from acidification and metal toxicity as well as provide needed minerals such as magnesium (Mg²⁺) and calcium (Ca²⁺) for early-stage development is controlled primarily by geology, which influences water hardness and acid-neutralizing capacity (ANC). The focus of this research was on the effects of …

Summer 2015 Gis Analyst Internship At The Connecticut Department Of Energy & Environmental Protection, Old Lyme, Connecticut, Stuart R. Deland

International Development, Community and Environment (IDCE)

I worked as the Geographic Information Systems (GIS) Internee for the Connecticut Department of Energy & Environmental Protection (CT DEEP) from May 18, 2015 through August 14th of the same year. I was stationed at the Old Lyme Field office and worked under the direct supervision of Deb Pacileo, my boss and GIS analyst for CT DEEP. My function in the agency was similar to my supervisor's as I had no single project that dominated my time, but was given a multitude of projects to create, edit, oversee, and produce. Some of these project included editing python scripts of former …

Impacts To Phytoplankton After The Establishment Of Quagga Mussels In Lake Mead, Nevada, Warren Bruce Turkett

UNLV Theses, Dissertations, Professional Papers, and Capstones

Quagga mussels (Dreissena rostriformis bugensis) are an invasive species that were discovered in Lake Mead in January of 2007, and rapidly spread throughout the lake. Quagga mussels are about the size of a fingernail, but are known to clog pipes, damage infrastructure and alter ecosystems. In large numbers, mussels can have a dramatic impact on an ecosystem by reducing the phytoplankton and potentially increasing toxin producing cyanobacteria. This research analyzed data collected from three separate basins in Lake Mead to determine if water quality characteristics that are commonly impacted by invasive mussels have changed. Transparency, chlorophyll-a, phytoplankton and zooplankton samples …

Population Genetic Analysis Of Atlantic Horseshoe Crabs (Limulus Polyphemus) In Coastal Massachusetts., Katherine T. Johnson

Masters Theses

Atlantic horseshoe crabs (Limulus polyphemus) have endured decades of intense harvest pressure. Genetics studies have shown evidence of distinct sub-groups spanning the coast, although few fine-scale studies have been done to delineate these groups on a local level. Massachusetts lies directly between two of these sub-groups. With documented differences in prosomal widths of horseshoe crabs from either side of Cape Cod, it is possible that Cape Cod is a barrier to gene flow and that there are two distinct genetic groups within Massachusetts. Regulations currently consider all horseshoe crabs to be of one stock. I examined 6 microsatellite …

Assessing Freshwater Mussels (Bivalvia: Unionidae) In South Dakota And Identifying Drivers Of Assemblage Variation, Kaylee L. Faltys

Electronic Theses and Dissertations

Native freshwater mussels (Family: Unionidae) are among the most threatened groups of freshwater fauna on Earth. Approximately 35 species have gone extinct since the 1900s and 72% of remaining species are considered endangered, threatened, or species of special concern. Unionid research can begin by establishing species presence and distributions via surveys. Objectives for this study were to 1) implement the first comprehensive unionid survey for South Dakota to assess distribution, composition, and decline, 2) estimate assemblage density and determine local versus broad scale habitat drivers of assemblage variation, and 3) determine areas of unionid conservation priority in South Dakota. Mussels …

A Comparative Analysis Of The Metabolism And Energetics Of Darters (Percidae), Emma Kirsten Kist

Theses, Dissertations and Capstones

Ecological niche theory suggests two species cannot live in the same ecological niche and differences should exist among species that appear to cohabitate. Variations in physiology and behavior that potentially enable species coexistence can be reflected in metabolism. This study investigated coexisting darter fishes by measuring the metabolism of greenside (Etheostoma blennioides) and variegate (E. variatum) darters over 48 h using intermittent-flow respirometry. Activity was analyzed using time-lapse videos. E. blennioides mean metabolic rate (154.64 ± SE 52.54 mg O2·kg-1 ·hr-1 ; n=14; p=0.0006) was significantly greater than and varied more than E. variatum’s mean rate (92.51 ± SE 32.70 …

Hibernacula Site Selection Of The Eastern Box Turtle, Terrapene C. Carolina, In A West Virginia Population, Benjamin Owen Koester

Theses, Dissertations and Capstones

Eastern Box Turtles (Terrapene c. carolina) are a terrestrially hibernating reptile found throughout the eastern United States. Despite their prevalence, little, outside of anecdotal observations, is known about their hibernacula selection. This study examines if they preferentially select hibernacula locations, and if so, what characteristics they select in a West Virginia population. Over the course of two years, radio-tagged turtles (n=12) were followed into hibernation in Wayne County, WV. Upon entering hibernation, ~36 data point were collected in a grid-like fashion around the hibernacula, with an additional point collected at the hibernacula. At each point, seven variables were recorded: soil …

Testing The Efficacy Of Anuran Callback Surveys, Matthew S. Grisnik

Theses, Dissertations and Capstones

Monitoring programs often suffer from imperfect detection resulting in skewed population estimates, biased estimates of changes in occupancy over time, and can result in an underestimated proportion of area occupied (PAO) by a species. To increase the detection probability, researchers must increase sampling both spatially and temporally. Callback surveys are an active form of sampling that have been used to monitor many avian and mammal species. During callback surveys, the call of a conspecific male is projected with the intention of increasing probability of detection by eliciting a response from territorial males. These methods work for organisms that establish breeding …