Life Sciences Commons^™

Bridging Biological Systems With Social Behavior, Conservation, Decision Making, And Well-Being Through Hybrid Mathematical Modeling, Maggie Renee Sullens

Faculty Publications and Other Works -- Mathematics

This dissertation defense presentation highlights the power of hybrid mathematical modeling and addresses crucial issues such as:

1️. The Impact of Industry Collapse on Community Mental Health: A Complex Contagion ODE Model.

2️. Budget Allocation and Illegal Fishing: A Game Theoretic Model.

3️. Reactive Scope Model with an Energy Budget and Multiple Mediators: An ODE Model

The overarching theme of Hybrid Mathematical Modeling beautifully captures the essence of this work, demonstrating its potential to unravel ecological issues while addressing the intricate interactions between humans and the environment.

Save Maine Lobstermen Website, June 2023, Maine Lobstermen's Association, Sutherland Weston

History of Maine Fisheries

Screen capture of the #SaveMaineLobstermen website created on June 2, 2023. The screen capture includes the web pages: "The Issue," "The Solution," "Join the Fight," "In Court," "Shop to Support," and "Contact." The website was created in reaction to the 2021 call by the National Marine Fisheries Services (NMFS) "ten-year whale plan that requires the Maine lobster fishery to reduce its already minimal risk to right whales by 98 percent."

This document includes all material available through the website on June 2, 2023, regarding the September 2021 lawsuit filed by the Maine Lobstermen's Association (MLA) challenging the 10-year whale plan. …

An Exploration Of Palauan Fishing Methods And Fisheries: A Study For The Conservation Of Dugongs, Mia Glover

Electronic Theses and Dissertations

The dugong (Dugong dugon) is an important marine mammal in Palau. However, current population dynamics are not well understood. This study aimed to connect scientific data with local knowledge by examining the social implications of changing fishing methods and their impact on dugong population dynamics in the face of climate change and fisheries commercialization. Through interviews with local fishers, it was found that destructive fishing methods like trawling and long lining have led to habitat loss and degradation for dugongs. These tactics, driven by economic factors, have disrupted the delicate balance between human activities and the preservation of dugong habitats, …

American Eel (Anguilla Rostrata) And Other Fishes As Surveyed By Environmental Dna In The Bronx River And Hudson River Watershed, Sam C. Chin

Dissertations, Theses, and Capstone Projects

Mounting an effective response to the threats faced by freshwater fish may require expansions to aquatic biomonitoring in excess of what is feasible using the capture-based survey techniques currently relied upon by natural resource managers. Methods for analyzing environmental DNA (eDNA) are emerging as a minimally invasive and cost-effective approach for surveying fish and other organisms. By detecting taxon-specific DNA sequences recovered from environmental samples (e.g. water, sediment), eDNA methods are able to infer species presence from samples that can be collected rapidly with simple equipment. In many cases, eDNA detection rates of fish species have been shown to meet …

List Of Fish Species Present In Galápagos, Ecuador, And California, U.S.A., With Notes On Their Commercial Importance And Conservation Status, Erin J. Hanson, Jose R. Marin Jarrin

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Abundance Of Shell-Boring Polychaete Worms And Other Fouling Organisms In Aquacultured Oysters From Maine Used For Reef Restoration In Great Bay, Nh, Haleigh Wright

Honors College

Restoration projects on the oyster reefs in Great Bay, NH have been active since 2009 with the most recent involving the transfer of oysters from Maine oyster farms into the Bay. In an attempt to prevent the transfer of non-native species from oyster farms to the reefs, samples of oysters from each farm were inspected for shell-boring polychaete infestations. Polydora websteri, a common shell-boring species worldwide, was in high abundance in reference samples from oyster farms in Great Bay and in samples from the restoration grounds, themselves. A second shell-boring species, provisionally identified as P. onagawaensis, is present on oyster …

Overfishing Drives Over One-Third Of All Sharks And Rays Toward A Global Extinction Crisis, Nicholas K. Dulvy, Nathan Pacoureau, Cassandra L. Rigby, Riley A. Pollom, Rima W. Jabado, David A. Ebert, Brittany Finucci, Caroline M. Pollock, Jessica Cheok, Danielle H. Derrick, Katelyn B. Herman, C. Samantha Sherman, Wade J. Vanderwright, Julia M. Lawson, Rachel H.L. Walls, John K. Carlson, Patricia Charvet, Kinattumkara K. Bineesh, Daniel Fernando, Gina M. Ralph, Jay H. Matsushiba, Craig Hilton-Taylor, Sonja V. Fordham, Colin A. Simpfendorfer

Biological Sciences Faculty Publications

The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing …

Assessing The Short-Term Effects Of Translocation On Freshwater Mussels: Is Habitat Or Water Quality More Important?, Joshua D. Arnold

Masters Theses

Freshwater mussels (Order: Unionida) are very important to the function of aquatic ecosystems and are typically indicators of good water quality. They provide a valuable link between the water column and the benthic substrate in which they live and are a valuable food resource for many species of animals. However, most species native to North America are currently threatened with extinction, to the point that more than 70% of native freshwater mussels are listed as either threatened or endangered at the state or federal level. The cause of this decline can be attributed to historical over exploitation, habitat alteration, and …

Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody

Institute Publications

Olympia oysters (Ostrea lurida) are our only native oyster species here in the Salish Sea. Olympia oysters once covered an estimated 13-26% of the intertidal area in Puget Sound, mostly near the heads of inlets. A combination of overharvest, pollution, and habitat loss reduced the current population to less than 4% of historic numbers, though sparse numbers of Olympia oysters can still be found throughout most of their historic distribution. Looking to the future, as our region’s marine waters experience effects of climate change and ocean acidification (OA), native species such as the Olympia oyster may prove to …

An Ecosystem Is Not A Monument, And Other Challenges To Fishing In The 21st Century, Roger Mann

VIMS Articles

The continental shelf of the United States was once the preserve of commercial fishermen. This is no longer the case. The exclusive economic zone is increasingly becoming the focus of other economically powerful, sometimes incompatible uses, including green energy, shipping, communications, mining, military exclusion zones, and conservation regions. These other uses generally have fixed boundaries. The distribution of fished species moves in relation to warming of shelf waters, presenting challenges to both federal regional fishery management councils and industry alike. There is need for continued engagement between user groups with respectful use of guiding science and legal structure to ensure …

Potential Solar Replacement Of Hydroelectricity To Reopen Rivers: Maine As A Case Example, Shailesh Sharma, John Waldman

Publications and Research

Hydroelectricity provides 6% of U.S. electrical power needs, but hydro-dams also cause environmental harm, including the retardation or complete blockage of spawning runs of anadromous fishes. To facilitate fish movements, engineered-fishways have long been used but many have performed poorly. Dam-removal is the most effective way of restoring dwindling migratory fish populations by allowing unrestricted pathways to their spawning areas and for the downstream migrations of post-spawning adults and juveniles. However, removals of hydro-dams result in a loss of electricity production. For the replacement of energy foregone from hydro-dam removals, various alternative energy installations are now feasible. We present one-to-one …

First Record Of Blacknape Large-Eye Bream Gymnocranius Satoi (Perciformes: Lethrinidae) In The Philippines, Nicko Amor Flores, Jade Tifany Rey, Jeffrey T. Williams, Kent Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

The Philippines has been regarded as the center of the center of marine shorefish biodiversity, having the highest number of fish species per square area in the world. The blacknape large-eye bream, Gymnocranius satoi, has been reported to occur from Southern Japan, Taiwan to Northwestern Australia and to the Coral Sea, but has not previously been recorded from the Philippines. From 2011 – 2019, the National Fisheries Research and Development Institute (NFRDI) collaborated with the National Museum of Natural History of the Smithsonian Institution (NMNH/SI), USA, and the Old Dominion University (ODU), Virgina, USA, to inventory all commercial fish …

Translating Globally Threatened Marine Species Information Into Regional Guidance For The Gulf Of Mexico, Kyle Strongin, Beth Polidoro, Christi Linardich, Gina Ralph, Kent Carpenter

Biological Sciences Faculty Publications

A comprehensive understanding of the status of marine organisms in the Gulf of Mexico is critical to the conservation and improved management of marine biodiversity in the region. Threats and extinction risk, based on application of the IUCN Red List Categories and Criteria at the global level, were analyzed for 1,300 Gulf of Mexico marine species. These species include all known marine mammals, sea birds, marine reptiles, cartilaginous fishes, bony shorefishes, corals, mangroves, seagrasses and complete clades of select invertebrates. Analyses showed that 6% of these species are threatened, 2% Near Threatened, 9% Data Deficient, and 83% Least Concern. However, …

Distribution, Density, Movement, And Support For Management Of Mountain Sucker, Pantosteus Jordani, In The Black Hills Of South Dakota, Seth J. Fopma

Electronic Theses and Dissertations

Mountain Sucker, Pantosteus jordani, is a cold-water species native to the Intermountain West. Fringe populations of Mountain Sucker have experienced declines in recent decades. The population of Mountain Sucker found in the Black Hills of South Dakota represents the eastern fringe of the species’ native range. Recognized as both an indicator of biologic health and as a species of greatest conservation need in South Dakota, recent studies have suggested significant declines in both distribution and abundance. Despite the recent study of Mountain Sucker in the region, increased understanding of Mountain Sucker ecology is needed to effectively manage for the conservation …

Operationalizing Ecological Resilience Concepts For Managing Species And Ecosystems At Risk, Jeanne C. Chambers, Craig R. Allen, Samuel A. Cushman

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

This review provides an overview and integration of the use of resilience concepts to guide natural resources management actions. We emphasize ecosystems and landscapes and provide examples of the use of these concepts from empirical research in applied ecology. We begin with a discussion of definitions and concepts of ecological resilience and related terms that are applicable to management. We suggest that a resilience-based framework for management facilitates regional planning by providing the ability to locate management actions where they will have the greatest benefits and determine effective management strategies. We review the six key components of a resilience-based framework, …

Assessing Populations Of Eastern Brook Trout (Salvelinus Fontinalis) Above And Below Waterfalls In Mountain Streams Of Virginia, Hannah Eisemann Macmillan

Masters Theses, 2010-2019

Anthropogenically driven factors, such as increasing temperature and sediment in valley streams, acidification of mountain streams, and the introduction of non-native trout, are restricting habitat suitable for healthy populations of eastern brook trout (Salvelinus fontinalis) throughout their native Appalachian range. Brook trout are important as predators of insects in mountain streams and as a favorite of anglers. It is crucial that remaining populations in sustainable habitats be identified and preserved. Waterfalls are geologic knickpoints preventing base-level lowering that create unique, stable landscapes above them, which may alleviate the temperature-productivity/acidity “habitat squeeze” for populations of brook trout and could …

An Acoustic Monitoring Method For Assessing River Dolphin Presence And Changes In The Context Of Anthropogenic Development, Charles A. Muirhead

Graduate Masters Theses

Populations of river dolphins throughout Asia are in decline as a direct result of intensified anthropogenic activity along river systems. Water development projects, land use change, contamination, and intensified fishing practices are known factors contributing to the probable extinction of the Yangtze river dolphin (Lipotes vexillifer) and declining populations of the South Asian river dolphin (Platanista gangetica spp.), Irrawady dolphin (Orcaella brevirostris), and finless porpoise (Neophocaena a. asiaeorientalis). Although not yet as extensive, river system development in South America is following a similar path as that of Asia, with impacts on dolphin species likely to follow. Currently, the Amazon river …

Conservation Of Freshwater Live-Bearing Fishes: Development Of Germplasm Repositories For Goodeids, Yue Liu

LSU Doctoral Dissertations

Fishes of the family Goodeidae are considered to be among the most imperiled taxa in the world. The goal of this project was to provide a foundation for development of sperm repositories for goodeids and to use them as a model to assist conservation programs for imperiled freshwater live-bearing fishes. Development of such repositories is challenging because of unusual reproductive characteristics of live-bearing fishes, such as sperm bundles, internal fertilization, and the bearing of live young. Standardized methods were established to evaluate quality-related attributes of sperm bundles. The different features between activation of free and bundled sperm were investigated and …

Debating The Effectiveness Of Marine Protected Areas, Linwood H. Pendleton, Gabby N. Ahmadia, Howard I. Browman, Ruth Thurstan, David M. Kaplan, Valerio Bartolino

VIMS Articles

Increasing the size and number of marine protected areas (MPAs) is widely seen as a way to meet ambitious biodiversity and sustainable development goals. Yet, debate still exists on the effectiveness of MPAs in achieving ecological and societal objectives. Although the literature provides significant evidence of the ecological effects of MPAs within their boundaries, much remains to be learned about the ecological and social effects of MPAs on regional and seascape scales. Key to improving the effectiveness of MPAs, and ensuring that they achieve desired outcomes, will be better monitoring that includes ecological and social data collected inside and outside …

The Effect Of Size On Juvenile Green Sturgeon (Acipenser Medirostris) Behavior Near Water-Diversion Fish Screens, Jamilynn B. Poletto, Dennis E. Cocherell, Natalie Ho, Joseph J. Cech Jr., A. Peter Klimley, Nann A. Fangue

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Anthropogenic water management projects and facilities that alter the local and regional hydrology of riverine environments greatly influence the behavior, physiology, and survival of native fishes. To mitigate for losses of native fishes at these structures, many are outfitted with fish-exclusion screens to reduce entrainment. The effect of fish size and age on behavior near fish screens, however, is largely unknown. Therefore, we tested two size classes of juvenile green sturgeon (Acipenser medirostris; small, early juveniles: 9.2 ± 0.2 cm fork length [FL], 6.9 ± 0.3 g; intermediate juveniles: 18.8 ± 0.2 cm FL, 36.9 ± 0.8 g) …

Evaluating Elasmobranch Bycatch And Shark Depredation In The Georgia Shrimp Fishery, Matthew M. Scanlon

Electronic Theses and Dissertations

The Georgia shrimp fishery has seen a dramatic decrease in profit and productivity since the 1980’s due to a number of economic factors. Additional, yet undocumented, pressures on this fishery include interactions between foraging sharks with trawl gear. Fishermen report that sharks frequently bite nets in an attempt to prey on netted fish, resulting in large holes in the gear. Further elasmobranch interactions with trawl gear occur as bycatch; shrimp trawls represent nearly 100% of elasmobranch commercial bycatch in Georgia state waters, the species composition of which is largely unstudied. Shark interactions with nets were detailed through fishery-dependent observations on …

Evaluating Habitat-Based Niche Requirements And Potential Recruitment Bottlenecks For Imperiled Bluehead Sucker (Catostomus Discobolus), Bryan C. Maloney

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Changes to rivers that alter physical and thermal habitat may cause fish population abundance to decline, due to fewer individuals maturing and entering the adult population. The Weber River has become highly degraded with many dams and diversions altering fish habitat, river volume, velocity, and temperature, and limiting movement between reaches. Bluehead suckers (Catostomus discobolus) occupy only 47% of their historical range and the genetically-distinct Weber River (northern UT) population is declining and contains few young, juvenile fish. My objectives were to determine whether spawning and rearing habitat available in the Weber River may be limiting bluehead sucker …

Body Shape Diversification Of Pecos Pupfish (Cyprinodon Pecosensis) On Varying Habitats As Evaluated By Geometric Morphometrics, Qianna Xu

Masters Theses & Specialist Projects

During the 19th and 20th centuries, alterations to the Pecos River in New Mexico and Texas, USA due to anthropogenic activities, including damning and river channelization, vast water extraction for irrigation, as well as pollution of associated habitats, have greatly impacted the fish fauna within the drainage. One of the endemic fish species, the Pecos pupfish (Cyprinodon pecosensis), might be the most affected. Historically abundant and widespread large populations have been disrupted and became a series of small isolated subpopulations that persist at a few highly fragmented habitats restricted to a small area in southern New Mexico. The connectivity among …

Protected Areas As Social-Ecological Systems: Perspectives From Resilience And Social-Ecological Systems Theory, Graeme S. Cumming, Craig R. Allen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Conservation biology and applied ecology increasingly recognize that natural resource management is both an outcome and a driver of social, economic, and ecological dynamics. Protected areas offer a fundamental approach to conserving ecosystems, but they are also social-ecological systems whose ecological management and sustainability are heavily influenced by people. This editorial, and the papers in the invited feature that it introduces, discuss three emerging themes in social-ecological systems approaches to understanding protected areas: (1) the resilience and sustainability of protected areas, including analyses of their internal dynamics, their effectiveness, and the resilience of the landscapes within which they occur; (2) …

A Descriptive Analysis Of Regal Fritillary (Speyeria Idalia) Habitat Utilizing Biological Monitoring Data Along The Big Bend Of The Platte River, Ne, Andrew J. Caven, Kelsey C. King, Joshua D. Wiese, Emma M. Brinley Buckley

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Speyeria idalia populations have declined as much as 95 percent over the last three decades. Here we critically evaluate prairie habitat components along the Platte River in central Nebraska that S. idalia populations require in an effort to better inform conservation efforts. We utilized S. idalia count data from biological monitoring transects where vegetation, soils, land management, and flooding frequency data were also collected to describe the habitat constituents associated with S. idalia presence. We utilize comparative statistics, Pearson’s correlation analysis, and random forest analysis to model S. idalia habitat on land owned and managed by a small conservation NGO. …

The Conservation Status Of Marine Biodiversity Of The Pacific Islands Of Oceania, H. Pippard, G. M. Ralph, M. S. Harvey, K. E. Carpenter, J. R. Buchanan, D. W. Greenfield, H. D. Harwell, H. K. Larson, A. Lawrence, C. Linardich, K. Matsuura, H. Motomura, T. A. Munroe, R. F. Myers, B. C. Russell, W. F. Smith-Vaniz, J. C. Vié, R. R. Thaman, J. T. Williams

Biological Sciences Faculty Publications

The Pacific Islands of Oceania are small islands and atolls occurring over a vast expanse of ocean that are characterized by immense biodiversity and endemism. This project represents a major expansion of the coverage of the Pacific Islands’ marine biodiversity on the IUCN Red List of Threatened Species. The threats to Pacific Island marine biodiversity are many. Results from IUCN Red List initiatives such as this can guide decision-making and conservation prioritization of Pacific Island governments, non-governmental organizations (NGOs) and the private sector. By shaping regional and national policies with these data in mind, priority sites for maintaining marine biodiversity …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

An Investigation Of Juvenile Alewife (Alosa Pseudoharengus) Habitat Use And Growth Using Natural Markers, Gregory Norman Labonte Ms

All Student Scholarship

This research attempts to connect patterns in growth and migration of an anadromous species. The goal of this research was to understand habitat movements and growth of juvenile alewives (Alosa pseudoharengus) in the Penobscot Estuary and Bay through the use of otolith microchemistry, otolith growth increments, and a laboratory stable isotope turnover study. Understanding the connection between growth and movement of juvenile alewives may lead to more accurate and sophisticated conservation and restoration methods for anadromous species.

Viewing The Status Of Virginia’S Environment Through The Lens Of Freshwater Fishes, Paul L. Angermeier, Michael J. Pinder

Virginia Journal of Science

We summarize a range of topics related to the status of Virginia’s freshwater fishes, their reflection of environmental quality, and their contribution to human wellbeing. Since 1994 the list of extant Virginia fishes has lengthened from 210 species to 227 species, mostly due to taxonomic reorganizations. Virginia’s list of Species of Greatest Conservation Need currently contains 96 fish species, predominated by darters (32 species) and minnows (28 species). Increasing trends in species rarity and threats to fishes suggest that Virginia’s aquatic environment is becoming less hospitable for fishes. Prevailing anthropogenic threats to fishes include agriculture, urban development, mineral extraction, forestry, …

Slides: Gwc Review Report, Larry Macdonnell

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Larry MacDonnell, University of Colorado Law School

12 slides