Life Sciences Commons^™

Cook2024_Influence Of Planting Depth Data, Kyle A. Cook, Brad Geary, Phil S. Allen, April Hulet, Kevin Gunnell, Melissa Landeen, Shannon V. Nelson, Matthew D. Madsen

ScholarsArchive Data

This file contains the data description for the Cook2024_1_Influence of Planting Depth… Supplementary File.

The excel file contains two worksheets: 1) Lab Trial Data, and 2) Field Trial Data.

1) Lab Trial Data

A) Block: block (rep) of the sample

B) Soil Type: soil type for that sample- loam, sandy-loam, or loamy-sand

C) Seed Treatment: seed treatment, control or coated

D) Seeding Depth (mm): depth, in mm, the seeds were planted- 0, 3.2, 6.3, 12.7

E) Week 1 Emerge: total number of seedlings emerged in Week 1

F) Week 2 Emerge: total number of seedlings emerged in Week 2 (includes …

Fungicide Data, Amber Johnson

ScholarsArchive Data

This dataset contains emergence, biomass, and fungal biomass data collected during a laboratory study examining the effects of soil fungal level and seed coating treatment on the growth of bluebunch wheatgrass (Pseudoroegneria spicata). Pathogenesis from soil and seed-borne fungus can limit success when restoring native species. Fungicides can combat fungal pathogens, but in some studies, fungicides treatments are ineffective at improving seedling emergence over untreated, control seed. These studies suggest low fungal presence due to dry conditions may be the cause of the ineffectiveness of fungicide treatments for some years and sites. This study tested if fungicide treatment …

Larson2023_Slow Release Of Ga3_Data, Alexandra J.S. Larson, Maureen Cartwright, Whitney D. Jones, Katrina Luce, Mei Chen, Kate Petersen, Shannon V. Nelson, David J. Michaelis, Matthew D. Madsen

ScholarsArchive Data

This file contains the data description for the Larson2023_Slow-release of GA3 Hormone… Supplementary File.

The excel file contains four worksheets: 1) Palmer’s germination, 2) Palmer’s biomass, 3) germination other species, 4) biomass other species. Blank cells indicate either no coating was used or there was no plant.

1) “Palmer’s germination” and “germination other species” A) Temp (o C): germination chamber temperature setting B) Species: common name of penstemon species tested (“germination other species” only) C) Treatment: seed coating treatment D) Final Germination percentage: percent of seed that germinated. E) FGP: final germination percent in decimal form F) Time to 50% …

Gibberellic Acid Data, Amber Johnson

ScholarsArchive Data

This dataset contains plant emergence and survival data collected from a field study which focused on overcoming seed dormancy. Seed dormancy can present a challenge within a restoration scenario where rapid establishment is required. Soaking seeds in gibberellic acid (GA₃) can overcome dormancy and increase germination but this treatment may not be effective outside the laboratory. An easier and potentially more effective method to apply this hormone is to coat seeds with a GA₃-impregnated polymer, which provides a slow release of GA₃. Seed dormancy can also be mitigated by creating a favorable microsite with …

Duplicate Gene Expression In Allopolyploid Gossypium Reveals Two Temporally Distinct Phases Of Expression Evolution, Joshua Udall, Lex E. Flagel, Dan Nettleton, Jonathan F. Wendel

Faculty Publications

Polyploidy has played a prominent role in shaping the genomic architecture of the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species contain two divergent, although largely redundant genomes. Owing to this redundancy, these genomes can play host to an array of evolutionary processes that act on duplicate genes. Results- We compared homoeolog (genes duplicated by polyploidy) contributions to the transcriptome of a natural allopolyploid and a synthetic interspecific F1 hybrid, both derived from a merger between diploid species from the Gossypium A-genome and D-genome groups. Relative levels of A- and D-genome contributions to the petal transcriptome were determined for 1,383 …

Expression And Evolutionary Relationships Of The Chenopodium Quinoa 11s Seed Storage Protein Gene, Mikel Stevens, Peter J. Maughan, Daniel J. Fairbanks, Marie R. B. Balzotti, Jennifer N. Thornton, David A. Mcclellan, Eric N. Jellen, Craig E. Coleman

Faculty Publications

Quinoa (Chenopodium quinoa Willd.) is a food crop cultivated by subsistence farmers and commercial growers on the high Andean plateau, primarily in Bolivia, Peru, and Chile. Present interest in quinoa is due to its tolerance of harsh environments and its nutritional value. It is thought that the seed storage proteins of quinoa, particularly the 11S globulins and 2S albumins, are responsible for the relatively high protein content and ideal amino acid balance of the quinoa seed. Here we report the genomic and cDNA sequences for two 11S genes representing two orthologous loci from the quinoa genome. Important features of the …

Ecological Factors Determining Nesting Habitat For American Avocets, Landon R. Jones

Student Works

The American Avocet (Recurvirostra americana) is a large shorebird that breeds and congregates in open, shallow, saline wetlands (Robinson et al. 1997). Its long, curved bill is well adapted for stirring up and feeding on invertebrates from the benthos. Because they fill such a narrow habitat niche, the majority of avocets concentrate in the thousands to breed in a few hot spots such as Mono Lake in California, and the Great Salt Lake in Utah (Robinson et al. 1997). Avocets arrive at the Great Salt Lake in late March and nest from mid-April to mid-July (Sordahl 1981). They require 15-20 …

Assessment Of Genetic Diversity In The Usda And Cip-Fao International Nursery Collections Of Quinoa (Chenopodium Quinoa Willd.) Using Microsatellite Markers, S. A. Christensen, D. B. Pratt, C. Pratt, P. T. Nelson, M. R. Stevens, Eric N. Jellen, Craig E. Coleman, Daniel J. Fairbanks, A. Bonifacio, Michael J. Maughan

Faculty Publications

Quinoa (Chenopodium quinoa Willd.) is a staple food crop for millions of impoverished rural inhabitants of Andean South America where it has been cultivated for millennia. Interest in quinoa, due largely to its superior nutritional characteristics, is fuelling a growing export market and has led to an increased focus on genetic research and the development of quinoa breeding programmes throughout South America. The success of these breeding programmes will rely heavily on the development of core germplasm collections and germplasm conservation. We report the development of a set of fluorescence-tagged microsatellite molecular markers that can be used to characterize genetic …

Spotted Cotton Oligonucleotide Microarrays For Gene Expression Analysis, Joshua Udall, Lex E. Flagel, Foo Chung, Andrew W. Woodward, Ran Hovav, Ryan A. Rapp, Jordan M. Swanson, Jinsuk J. Lee, Alan R. Gingle, Dan Nettleton, Christopher D. Town, Z. Jeffrey Chen, Jonathan F. Wendel

Faculty Publications

Microarrays offer a powerful tool for diverse applications plant biology and crop improvement. Recently, two comprehensive assemblies of cotton ESTs were constructed based on three Gossypium species. Using these assemblies as templates, we describe the design and creation and of a publicly available oligonucleotide array for cotton, useful for all four of the cultivated species. Results: Synthetic oligonucleotide probes were generated from exemplar sequences of a global assembly of 211,397 cotton ESTs derived from <50 different cDNA libraries representing many different tissue types and tissue treatments. A total of 22,787 oligonucleotide probes are included on the arrays, optimized to target the diversity of the transcriptome and previously studied cotton genes, transcription factors, and genes with homology to Arabidopsis. A small portion of the oligonucleotides target unidentified protein coding sequences, thereby providing an element of gene discovery. Because many oligonucleotides were based on ESTs from fiber-specific cDNA libraries, the microarray has direct application for analysis of the fiber transcriptome. To illustrate the utility of the microarray, we hybridized labeled bud and leaf cDNAs from G. hirsutum and demonstrate technical consistency of results. Conclusion: The cotton oligonucleotide microarray provides a reproducible platform for transcription profiling in cotton, and is made publicly available through http://cottonevolution.info.

Variables Associated With Northern Goshawk Nesting On The Dixie National Forest, J. Jorgensen, R. L. Rodriguez, Landon R. Jones

Student Works

The Northern Goshawk (Accipiter genii/is) is a large forest raptor in the northern hemisphere that preys on small to medium-sized birds and mammals in mature forests (Squires and Reynolds 1997). Because forest structure and composition in the southwest have undergone significant change since pre-settlement times due to fire suppression, timber harvesting, livestock grazing, mining, and recreational use (Reynolds et al. 1992), the goshawk has been listed as a Forest Service sensitive species for Region 4, which includes the Dixie National Forest in Utah. This ranking dictates that for all actions on the Forest, effects to the species must be addressed. …

Northern Goshawk Nest Activity As An Indicator Of Habitat Quality On Three National Forests In Southern Utah, K. S. Marvel, R. L. Rodriguez, Landon R. Jones

Student Works

The Northern Goshawk (Accipiter gentilis) has been a species of concern in the western United States since it was thought to be in decline in the 1970s. Loss of critical breeding and wintering habitat has contributed, in part, to this decline. In the U.S., the goshawk was listed in 1991 as a sensitive species for the Intermountain Region of the Forest Service. This region includes all National Forests in Utah. The goshawk also holds the status of a Management Indicator Species (MIS) on all six National Forests in Utah (USDA Forest Service 1999). The aim of the Forest Service was …

Genetic Diversity And Low Reproductive Success In Isolated Populations Of Utah Juniper (Juniperus Osteosperma, Cupressaceae), Loreen Allphin, Val J. Anderson, Amy F. Hunt

Faculty Publications

Utah juniper (Juniperus osteosperma) has greatly expanded its historical range in the western United States. Management plans for the species have focused on curtailing its encroachment into sagebrush and grassland communities. These plans often include burning or other methods of elimination. These methods may result in subdivision or fragmentation of existing juniper stands. We initiated a study at Dugway Proving Ground, a U.S. Army facility, to examine the effects of fragmentation on the reproductive success of Utah juniper in isolated populations. We used enzyme electrophoresis to quantify genetic variability in isolated populations. We also determined population reproductive success by examining …

Evolution Of The Nanog Pseudogene Family In The Human And Chimpanzee Genomes, Daniel J. Fairbanks, Peter J. Maughan

Faculty Publications

The NANOG gene is expressed in mammalian embryonic stem cells where it maintains cellular pluripotency. An unusually large family of pseudogenes arose from it with one unprocessed and ten processed pseudogenes in the human genome. This article compares the NANOG gene and its pseudogenes in the human and chimpanzee genomes and derives an evolutionary history of this pseudogene family. Results: The NANOG gene and all pseudogenes except NANOGP8 are present at their expected orthologous chromosomal positions in the chimpanzee genome when compared to the human genome, indicating that their origins predate the human-chimpanzee divergence. Analysis of flanking DNA sequences demonstrates …

Seasonal Acceptance Of Fourwing Saltbush By Sheep When Crested Wheatgrass Is The Alternative, Val J. Anderson, R. D. Horrocks, Christine W. Royer, Stephen B. Monsen

Faculty Publications

Many sagebrush-grass ranges have been seeded to crested wheatgrass [Agropyron desertorum (Fischer ex Link) Shultes]. These ranges are generally nutritionally inadequate for sheep (Ovis aries L.), except for short grazing periods in the spring and fall. To increase production and diversity, particularly crude protein for late-season grazing, fourwing saltbush [Atriplex canescens (Pursch.) Nutt.] was planted in an existing stand of crested wheatgrass. Quantification of sheep forage preferences on these improved ranges aids in determining the length of the grazing season and the extent to which shrubs provide the supplemental nutrition required. This seasonal grazing study was conducted on a characteristic …

Genetic Variation In Ustilago Bullata: Molecular Genetic Markers And Virulence On Bromus Tectorum Host Lines, Mikel Stevens, Daniel J. Fairbanks, Susan E. Meyer, David L. Nelson, Suzette Clement, Jennifer Waters

Faculty Publications

The pathogen Ustilago bullata often causes epidemic levels of head smut disease in Intermountain populations of the inbreeding annual grass Bromus tectorum. We examined patterns of genetic variation for virulence and for amplified fragment length polymorphism (AFLP) markers in four U. bullata populations on B. tectorum in northern Utah and southern Nevada. Patterns of disease incidence generally supported a genefor-gene model for virulence and resistance in this pathosystem. Most host lines were susceptible to most or all paired isolates included in cross-inoculation tests, but we found evidence for the existence of four avirulence genes. Host lines with alleles conferring resistance …

Using Hydrothermal Time Concepts To Model Seed Germination Response To Temperature Dormancy Loss And Priming Effects In Elymus Elymoides, Phil S. Allen, Susan E. Meyer, Susan B. Debaene-Gill

Faculty Publications

Hydrothermal time (HTT) describes progress toward seed germination under various combinations of incubation water potential (Ψ) and temperature (T). To examine changes in HTT parameters during dormancy loss, seeds from two populations of the bunchgrass Elymus elymoides were incubated under seven temperature regimes following dry storage at 10, 20 and 30 °C for intervals from 0 to 16 weeks. Fully after-ripened seeds were primed for 1 week at a range of s. Data on germination rate during priming were used to obtain a HTT equation for each seed population, while data obtained following transfer to water were used to calculate …

Stomatal Characterization Of Grass Leaves By Four Preparation Techniques, Val J. Anderson, John S. Gardner, Joyce Phillips Hardy

Faculty Publications

Four leaf preparation techniques (air drying, tetramethylsilane air drying, critical point drying, and freeze substitution) used in scanning electron microscopy (SEM) were evaluated with respect to the degree of cellular distortion they produce in stomatal guard cells of leaves of Dactylis glomerata and Elymus canadensis. Surface morphological distortion and cuticle disruption in the air-dried and tetramethylsilane air-dried leaves, and cuticle disruption within the critical point-dried tissue made it difficult to obtain measurements.The freeze-substituted tissue experienced little cuticle disturbance, and the cellular morphology appeared normal. The length of the guard cells did not significantly differ between the air-dried, tetramethylsilane air-dried, critical …

Mammals Of Utah County, James W. Bee

Student Works

Based on the premises that an accurate determination and description of the mammals of Utah County is a prerequisite for subsequent research in ecology, geographic distribution and evolutionary taxonomy, this thesis is submitted. While it is essentially taxonomic, there are included related subjects to permit a more thorough interpretation of the subject as a whole.

Summarizing, the objectives are:

• a. To list and key the known mammals of Utah County with descriptions and measurements.
• b. To ascertain their geographic range within the county.
• c. To present significant ecological and geological data for the proper appreciation of the problems of evolutionary …