Engineering Commons^™

Invasion Of The P Elements: Tolerance Is Not Futile, Colin D. Meiklejohn, Justin P. Blumenstiel

Biological Systems Engineering: Papers and Publications

Organisms are locked in an eternal struggle with parasitic DNA sequences that live inside their genomes and wreak havoc on their host’s chromosomes as they spread through populations. To combat these parasites, host species have evolved elaborate mechanisms of resistance that suppress their activity. A new study in Drosophila indicates that, prior to the acquisition of resistance, individuals can vary in their ability to tolerate the activity of these genomic parasites, ignoring or repairing the damage they induce. This tolerance results from variation at genes involved in germline development and DNA damage checkpoints and suggests that these highly conserved cellular …

Measuring Landscape Performance: Case Study Investigation, Hannah Michelle Lopresto, Brandon Zambrano, Catherine De Almeida

UCARE Research Products

Participating in the Landscape Architecture Foundation’s 2018 Case Study Investigation has been an incredibly informative experience for our research team at the University of Nebraska-Lincoln. We are eager to shine a spotlight on the landscape performance of two Great Plains projects: P Street Corridor, a revitalized downtown streetscape in Lincoln, Nebraska, and Tom Hanafan River’s Edge Park, a waterfront redevelopment in Council Bluffs, Iowa. Working on the post-occupancy study of both projects has been extremely beneficial in understanding how reclaiming underutilized sites can create high-performing landscapes. Both are public projects in urban settings with primary goals of transforming formerly unpleasant, …

Cover Crops Have Negligible Impact On Soil Water In Nebraska Maize–Soybean Rotation, J. Burdette Barker, Derek M. Heeren, Katja Koehler-Cole, Charles Shapiro, Humberto Blanco-Canqui, Roger W. Elmore, Christopher A. Proctor, Suat Irmak, Charles A. Francis, Tim M. Shaver, Ali T. Mohammed

Biological Systems Engineering: Papers and Publications

One perceived cost of integrating winter cover cropping in maize (Zea mays L.) and soybean [Glycine max (L.) Merr.] rotation systems is the potential negative impact on soil water storage available for primary crop production. The objective of this 3-year study was to evaluate the effects of winter cover crops on soil water storage and cover crop biomass production following no-till maize and soybean rotations. Locations were near Brule (west-central), Clay Center (south-central), Concord (northeast), and Mead (east-central), Nebraska, United States. Treatments included crop residue only (no cover crop) and a multi-species cover crop mix, both broadcast-seeded before …

Plant Community Composition, Floristic Quality, And Establishment Of Roadside Revegetation In Nebraska, Usa., Jonathan M. Soper

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Roadside revegetation poses a challenge and opportunity for biodiversity conservation, as the land area occupied by roadsides is not expected to decline in the future. In the context of roadside revegetation activities in rural regions dominated by agricultural land uses, revegetation efforts can establish plant communities that offer unique species that would otherwise be absent on the landscape. To determine the efficacy of roadside revegetation efforts in 1) providing plant communities of high biodiversity value and 2) meeting the expectations of roadside revegetation managers for establishment, we quantified botanical composition, floristic quality, and success in seeding efforts to meet manager …

Evaluation Of Effectiveness Of Streambank Stabilization Practices And Flood Impact On Cedar River, Nebraska, Naisargi N. Dave

Department of Environmental Engineering: Theses and Student Research

Stream restoration has been a major environmental objective for preserving biodiversity, reducing loss of valuable cropland and improving water quality. The impact and efficiency of streambank stabilization practices has been simulated using erosion-prediction models; however, evaluation of the erosion-control practices to measure their efficiency is often neglected. This project monitored changes in fluvial geomorphology on the Cedar River in Nebraska and quantified the effectiveness of 18 sites with streambank stabilization practices. A flood event in 2010 due to dam failure acted as a major parameter in measuring the efficiency of the erosion control practices. The methodology included aerial imagery to …

Evaluating Opportunities And Barriers To Improving The Energy Efficiency Of Small Nebraska Wastewater Treatment Plants, Matthew J. Thompson

Department of Environmental Engineering: Theses and Student Research

Wastewater treatment plants (WWTP)s account for about 0.8% of U.S. electricity use. Small WWTPs serving communities of populations less than 10,000 accounts for 95% of treatment plants in Nebraska. These plants are significantly less efficient compared to large systems and thus improving their energy efficiency (E2) is a growing focus in efforts to reduce greenhouse gas emissions associated with their operation. Energy use of plant unit operations was evaluated for several plants and included analysis of energy for space heating. Specific infrastructure and/or operational changes reported by operators following an E2 benchmarking project were evaluated by quantifying the change in …

Portable Flux Tower Deployments Field Campaign Report, M. S. Torn, L Kuepper, S. C. Biraud, D. P. Billesbach

Biological Systems Engineering: Papers and Publications

Contents

Acronyms and Abbreviations...................................................................... iii

1.0 Summary ....................................................... 1

2.0 Results ........................................... 1

3.0 Publications and References ................................................. 2

4.0 Lessons Learned .................................................................... 2

Tradeoffs In Model Performance And Effort For Long-Term Phosphorus Leaching Based On In Situ Field Data, Ryan P. Freiberger, Derek M. Heeren, Dean E. Eisenhauer, Aaron R. Mittelstet, Guillermo Baigorria

Biological Systems Engineering: Papers and Publications

Phosphorus and N are critical nutrients for agriculture but are also responsible for surface water enrichment that leads to toxic algal growth. Although P loading to surface waters has traditionally been thought to occur primarily in surface runoff, contributions from subsurface transport can also be significant. The primary objectives of this research were to evaluate several methods of representing macropore flow and transport in a finite element model using plot-scale infiltration and leaching data and to compare several models of various levels of complexity to simulate long-term P leaching. To determine flow and transport parameters, single- and dual-porosity models in …

U.S. Agro-Climate In 20th Century: Growing Degree Days, First And Last Frost, Growing Season Length, And Impacts On Crop Yields, Meetpal Singh Kukal, Suat Irmak

Biological Systems Engineering: Papers and Publications

Significant air temperature changes have occurred globally during the 20th century, which are spatially variable to a considerable degree and these changes can have substantial implications in agroecosystem productivity. The agroclimate indicators that are responsible in these contexts are first fall frost (FFF), last spring frost (LSF), climatological growing season (CGS) length, and heat accumulation (growing degree days, GDD). We explore spatial and temporal trends associated with these indices across the continental U.S. (CONUS) during 1900–2014 using datasets collected at 1218 sites. On average, FFF has been occurring later (by 5.4 days century⁻¹), and LSF has been occurring …

Wetland Conservation Effects Result In Enhanced Playa Functionality In The Rainwater Basin, Nebraska, Hong Zhang

Community and Regional Planning Program: Theses and Student Projects

This study assessed the functionality level of wetland hydrology, hydrophyte and soil conditions, and then identified the restorable potential of conserved playas. The distribution of hydrology and hydrophyte were geospatially examined through annual tracking the quantity and quality of wetlands on historical hydric soil footprints under different conservation programs in the Rainwater Basin (RWB) in Nebraska, USA during 2004-2015. The results show that the historical hydric soil footprints with the conservation programs had significantly higher functionality of ponded water and hydrophyte than non-conserved wetlands. The yearly average of ponded water areas within footprints varies at 12.59% for the Waterfowl Production …

Rainwater Harvesting System Scenario Analysis On Runoff Reduction Potential In Surabaya, Indonesia: A Geospatial Analysis For Brantas Hilir Watershed, Putri Sukmahartati

Department of Civil and Environmental Engineering: Dissertations, Theses, and Student Research

Global warming has become an environmental concern over the past several decades and its impact on the water cycle is very crucial to the well-being of the human population. In the hydrological cycle, water evaporates by the heat of the sun and atmosphere, where it is accumulated in the atmosphere via clouds and it then falls as rain. With warmer temperatures, more intensive evaporation and downpours occur. In addition, impervious surfaces are increasing as a result of urban development. Those surfaces cause more water to flow faster into open water bodies, creating more extensive flooding, and additionally reducing water quality. …

Evaluation Of A Hybrid Reflectance-Based Crop Coefficient And Energy Balance Evapotranspiration Model For Irrigation Management, J. Burdette Barker, Christopher M. U. Neale, Derek M. Heeren, Andrew E. Suyker

Biological Systems Engineering: Papers and Publications

Accurate generation of spatial soil water maps is useful for many types of irrigation management. A hybrid remote sensing evapotranspiration (ET) model combining reflectance-based basal crop coefficients (K_cbrf) and a two-source energy balance (TSEB) model was modified and validated for use in real-time irrigation management. We modeled spatial ET for maize and soybean fields in eastern Nebraska for the 2011-2013 growing seasons. We used Landsat 5, 7, and 8 imagery as remote sensing inputs. In the TSEB, we used the Priestly-Taylor (PT) approximation for canopy latent heat flux, as in the original model formulations. We also used the …

Climate-Driven Crop Yield And Yield Variability And Climate Change Impacts On The U.S. Great Plains Agricultural Production, Meetpal Singh Kukal, Suat Irmak

Biological Systems Engineering: Papers and Publications

Climate variability and trends affect global crop yields and are characterized as highly dependent on location, crop type, and irrigation. U.S. Great Plains, due to its significance in national food production, evident climate variability, and extensive irrigation is an ideal region of investigation for climate impacts on food production. This paper evaluates climate impacts on maize, sorghum, and soybean yields and effect of irrigation for individual counties in this region by employing extensive crop yield and climate datasets from 1968–2013. Variability in crop yields was a quarter of the regional average yields, with a quarter of this variability explained by …

Dynamic Rops Test For Tractors Over 6,000 Kilograms, Caleb M. Lindhorst, Roger M. Hoy, Santosh Pitla, Michael F. Kocher

Biological Systems Engineering: Papers and Publications

OECD static tests (Codes 4, 6, 7, and 8) for agricultural rollover protective structures (ROPS) have become accepted standards for evaluating the ability of these structures to protect the operator during tractor rollover events. The strength properties of some materials typically used in ROPS change because of cold weather embrittlement at low temperatures. The static ROPS tests lack the ability to evaluate the strength of these structures during cold weather. The use of the dynamic ROPS test is well noted as a means for proving cold weather embrittlement resistance properties. Unfortunately, application of the OECD dynamic ROPS test (Code 3) …

Field-Based Scoring Of Soybean Iron Deficiency Chlorosis Using Rgb Imaging And Statistical Learning, Geng Bai, Shawn Jenkins, Wenan Yuan, George L. Graef, Yufeng Ge

Biological Systems Engineering: Papers and Publications

Iron deficiency chlorosis (IDC) is an abiotic stress in soybean that can cause significant biomass and yield reduction. IDC is characterized by stunted growth and yellowing and interveinal chlorosis of early trifoliate leaves. Scoring IDC severity in the field is conventionally done by visual assessment. The goal of this study was to investigate the usefulness of Red Green Blue (RGB) images of soybean plots captured under the field condition for IDC scoring. A total of 64 soybean lines with four replicates were planted in 6 fields over 2 years. Visual scoring (referred to as Field Score, or FS) was conducted …

Crop Evapotranspiration, Irrigationwater Requirement And Water Productivity Of Maize From Meteorological Data Under Semiarid Climate, Koffi Djaman, Michael O'Neill, Curtis K. Owen, Daniel Smeal, Komlan Koudahe, Margaret West, Samuel Allen, Kevin Lombard, Suat Irmak

Biological Systems Engineering: Papers and Publications

Under the semiarid climate of the Southwest United States, accurate estimation of crop water use is important for water management and planning under conservation agriculture. The objectives of this study were to estimate maize water use and water productivity in the Four Corners region of New Mexico. Maize was grown under full irrigation during the 2011, 2012, 2013, 2014 and 2017 seasons at the Agricultural Science Center at Farmington (NM). Seasonal amounts of applied irrigation varied from 576.6 to 1051.6 mm and averaged 837.7 mm and the total water supply varied from 693.4 to 1140.5 mm. Maize actual evapotranspiration was …

Unmanned Aerial Systems-Based Remote Sensing For Monitoring Sorghum Growth And Development, Sanaz Shafian, Nithya Rajan, Ronnie Schnell, Muthukumar Bagavathiannan, John Valasek, Yeyin Shi, Jeff Olsenholler

Biological Systems Engineering: Papers and Publications

Unmanned Aerial Vehicles and Systems (UAV or UAS) have become increasingly popular in recent years for agricultural research applications. UAS are capable of acquiring images with high spatial and temporal resolutions that are ideal for applications in agriculture. The objective of this study was to evaluate the performance of a UAS-based remote sensing system for quantification of crop growth parameters of sorghum (Sorghum bicolor L.) including leaf area index (LAI), fractional vegetation cover (f_c) and yield. The study was conducted at the Texas A&M Research Farm near College Station, Texas, United States. A fixed-wing UAS equipped with a …

Hydrologic Evaluation Of Residential Rain Gardens Using A Stormwater Runoff Simulator, A. R. Anderson, T. G. Franti, D. P. Shelton

Biological Systems Engineering: Papers and Publications

Engineered bioretention cells with underdrains have shown water quality and hydrologic benefits for abating urban stormwater problems. Less is known about the hydrologic performance of residential rain gardens that rely on in situ soil infiltration as the primary mechanism of volume control. Eleven residential rain gardens in Lincoln, Nebraska, were evaluated using a variable-rate stormwater runoff simulator. A volume-based water quality volume (WQV) design storm of 3.0 cm was applied to each rain garden as an SCS Type II runoff hydrograph until the system began overflowing to test the rain gardens for surface and subsurface storage capacity, drawdown rate, ponding …

Evaluation Of Critical Nitrogen And Phosphorus Models For Maize Under Full And Limited Irrigation Conditions, Koffi Djaman, Suat Irmak

Biological Systems Engineering: Papers and Publications

Proper nitrogen (N) fertiliser application rates and timing of application, coupled with optimum irrigation management can improve the sustainability of maize production and reduce the risk of environmental contamination by nutrients. The impact of full and limited irrigation and rainfed conditions on in-season maize (Zea mays L.) shoot biomass nutrient concentration and critical N and phosphorus (P) indices were evaluated using a combination of measured nutrients and critical N and P models in south central Nebraska in 2009 and 2010. Four irrigation treatments [fully-irrigated treatment (FIT), 75% FIT, 60% FIT and 50% FIT) and rainfed] were imposed. Irrigation regimes …

Sustainable Waste-To-Energy Technologies: Bioelectrochemical Systems, Rami Ziara, Bruce Dvorak, Jeyamkondan Subbiah

Department of Civil and Environmental Engineering: Faculty Publications

The food industry produces a large amount of waste and wastewater, of which most of the constituents are carbohydrates, proteins, lipids, and organic fibers. Therefore food wastes are highly biodegradable and energy rich. Bioelectrochemical systems (BESs) are systems that use microorganisms to biochemically catalyze complex substrates into useful energy products, in which the catalytic reactions take place on electrodes. Microbial fuel cells (MFCs) are a type of bioelectrochemical systems that oxidize substrates and generate electric current. Microbial electrolysis cells (MECs) are another type of bioelectrochemical systems that use an external power source to catalyze the substrate into by-products such as …

Three-Dimensional Modeling Of Nitrate-N Transport In Vadose Zone: Roles Of Soil Heterogeneity And Groundwater Flux, Simin Akbariyeh, Shannon L. Bartelt-Hunt, Daniel D. Snow, Xu Li, Zhenghong Tang, Yusong Li

Department of Civil and Environmental Engineering: Faculty Publications

Contamination of groundwater from nitrogen fertilizers in agricultural lands is an important environmental and water quality management issue. It is well recognized that in agriculturally intensive areas, fertilizers and pesticides may leach through the vadose zone and eventually reach groundwater. While numerical models are commonly used to simulate fate and transport of agricultural contaminants, few models have considered a controlled field work to investigate the influence of soil heterogeneity and groundwater flow on nitrate-N distribution in both root zone and deep vadose zone.

In this work, a numerical model was developed to simulate nitrate-N transport and transformation beneath a center …

Impact Of Vegetative Treatment Systems On Multiple Measures Of Antibiotic Resistance In Agricultural Wastewater, Lisa M. Durso, Daniel N. Miller, Christopher G. Henry

Biological Systems Engineering: Papers and Publications

Wastewater is an important vector of antibiotic resistant bacteria and antibiotic resistance genes (ARB/G). While there is broad agreement that ARB/G from agricultural (ag) wastewaters can be transported through the environment and may contribute to untreatable infectious disease in humans and animals, there remain large knowledge gaps surrounding applied details on the types and amounts of ARB/G associated with different agricultural wastewater treatment options and different ag production systems. This study evaluates a vegetative treatment system (VTS) built to treat the wastewater from a beef cattle feedlot. Samples were collected for three years, and plated on multiple media types to …

Special Issue: Microbial Community Modeling: Prediction Of Microbial Interactions And Community Dynamics, Hyun-Seob Song

Biological Systems Engineering: Papers and Publications

Microbial communities are networks of species, the interaction structure of which dynamically reorganizes in a varying environment. Even in a static condition, community dynamics are often difficult to predict due to highly nonlinear interspecies interactions. Understanding the fundamental principles of microbial interactions is therefore key for predicting and harnessing community function and properties. As extensively reviewed previously, mathematical models and computational methods that can predictively link interactions to community behaviors are indispensable tools for achieving this goal [1].

2018 Nebraska Groundwater Quality Monitoring Report

Nebraska Department of Environmental Quality: Reports

The 2001 Nebraska Legislature passed LB329 (Neb. Rev. Stat. §46-1304) which, in part, directed the Nebraska Department of Environmental Quality (NDEQ) to report on groundwater quality monitoring in Nebraska. Reports have been issued annually since December 2001. The text of the statute applicable to this report follows: “The Department of Environmental Quality shall prepare a report outlining the extent of ground water quality monitoring conducted by natural resources districts during the preceding calendar year. The department shall analyze the data collected for the purpose of determining whether or not ground water quality is degrading or improving and shall present the …

Comparison Of Three Regionalization Techniques For Predicting Streamflow In Ungaged Watersheds In Nebraska, Usa Using Swat Model, Michael W. Van Liew, Aaron R. Mittelstet

Biological Systems Engineering: Papers and Publications

This study compared three approaches, regional averaging, nearest neighbor, and donor techniques, to regionalize parameters in the Soil and Water Assessment Tool (SWAT) on eleven watersheds located in the Dissected Plains, Plains, and Rolling Hills Landforms in the eastern portion of the State of Nebraska, USA. Within the Rolling Hills Landform, three watersheds were randomly selected as calibration watersheds while two were randomly selected as validation watersheds. Two watersheds were randomly selected as calibration watersheds while one was randomly selected as a validation watershed within each of the Dissected Plains and Plains Landforms. The seven calibration watersheds were used to …

Impact Of Eastern Redcedar Proliferation On Water Resources In The Great Plains Usa—Current State Of Knowledge, Chris B. Zou, Dirac Twidwell, Christine H. Bielski, Dillon T. Fogarty, Aaron R. Mittelstet, Patrick J. Starks, Rodney E. Will, Yu Zhong, Bharat Sharma Acharya

Biological Systems Engineering: Papers and Publications

In the Great Plains of the central United States, water resources for human and aquatic life rely primarily on surface runoff and local recharge from rangelands that are under rapid transformation to woodland by the encroachment of Eastern redcedar (redcedar; Juniperus virginiana) trees. In this synthesis, the current understanding and impact of redcedar encroachment on the water budget and water resources available for non-ecosystem use are reviewed. Existing studies concluded that the conversion from herbaceous-dominated rangeland to redcedar woodland increases precipitation loss to canopy interception and vegetation transpiration. The decrease of soil moisture, particularly for the subsurface soil layer, …

Integration Of Hydrogeophysical Datasets And Empirical Orthogonal Functions For Improved Irrigation Water Management, Catherine E. Finkenbiner, Trenton E. Franz, Justin P. Gibson, Derek M. Heeren, J. D. Luck

Biological Systems Engineering: Papers and Publications

Precision agriculture offers the technologies to manage for infield variability and incorporate variability into irrigation management decisions. The major limitation of this technology often lies in the reconciliation of disparate data sources and the generation of irrigation prescription maps. Here the authors explore the utility of the cosmic-ray neutron probe (CRNP) which measures volumetric soil water content (SWC) in the top ~ 30 cm of the soil profile. The key advantages of CRNP is that the sensor is passive, non-invasive, mobile and soil temperature-invariant, making data collection more compatible with existing farm operations and extending the mapping period. The objectives …

Phenotypic Responses To Interspecies Competition And Commensalism In A Naturally Derived Microbial Co-Culture, Nymul Khan, Yukari Maezato, Ryan S. Mcclure, Colin J. Brislawn, Jennifer M. Mobberley, Nancy Isern, William B. Chrisler, Lye Meng Markillie, Brett M. Barney, Hyun-Seob Song, William C. Nelson, Hans C. Bernstein

Biological Systems Engineering: Papers and Publications

The fundamental question of whether different microbial species will co-exist or compete in a given environment depends on context, composition and environmental constraints. Model microbial systems can yield some general principles related to this question. In this study we employed a naturally occurring co-culture composed of heterotrophic bacteria, Halomonas sp. HL-48 and Marinobacter sp. HL- 58, to ask two fundamental scientific questions: 1) how do the phenotypes of two naturally co-existing species respond to partnership as compared to axenic growth? and 2) how do growth and molecular phenotypes of these species change with respect to competitive and commensal interactions? We …

Surface Detention On Cropland, Rangeland, And Conservation Reserve Program Areas, John E. Gilley

Biological Systems Engineering: Papers and Publications

One of the factors contributing to overland flow on upland areas is water stored temporarily in a thin sheet on the soil surface as surface detention. This study was conducted to quantify surface detention on selected cropland, rangeland, and Conservation Reserve Program (CRP) sites. Surface detention was determined from the recession portion of runoff hydrographs corresponding with the period when rainfall had ceased but runoff continued. The hydrographs were generated from six previously reported rainfall simulation studies conducted on paired 3.7 m wide  10.7 m long plots on which approximately 128 mm of rainfall was applied. Surface detention values …

Evaluation Of The Accuracy Of Machine Reported Can Data For Engine Torque And Speed (J1939), Rodney A. Rohrer, Joe D. Luck, Santosh K. Pitla, Roger M. Hoy

Biological Systems Engineering: Papers and Publications

Most modern off-road machinery use embedded electronic controllers connected to a controller area network (CAN) to broadcast machine information for on-board processes and diagnostics. Commercially available tools can record CAN data for a variety of research and commercial uses. For agricultural tractors, there is an opportunity to create advanced test procedures that are more representative of field operations and that could supplement existing machine performance tests, such as the OECD Code 2 Standard Code for the Official Testing of Agricultural and Forestry Tractor Performance. CAN parameters provide an efficient way to collect tractor performance data during field operations. However, the …