Engineering Commons^™

Preface: Earth Observation For Integrated Water And Basin Management: Challenges For Adaptation To A Changing Environment, María J. Polo, Maria P. González-Dugo, Christopher M.U. Neale

Daugherty Water for Food Global Institute: Faculty Publications

Integrated river basin management involves a sound knowledge of water and land interactions, and impacts from and feedbacks to human activity. Remote sensing has been an efficient and increasingly promising means of gathering direct information of the Earth surface, as well as information on water and energy fluxes. The recent generation of high-resolution sensors offers a huge potential for monitoring, assessing, and modelling our changing environment in a context of uncertainty about how future climate conditions will affect the current water resource and basin management framework. Moreover, large amounts of data are now available posing a challenging opportunity to the …

Riverbank Filtration Impacts On Post Disinfection Water Quality In Small Systems—A Case Study From Auburn And Nebraska City, Nebraska, Matteo D'Alessio, Bruce Dvorak, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

Small water systems can experience a fluctuating quality of water in the distribution system after disinfection. As chlorine is the most common disinfectant for small systems, the occurrence of disinfection byproducts (DBPs) represents a common problem for these systems. Riverbank filtration (RBF) can be a valuable solution for small communities located on riverbanks. The objectives of this study were to evaluate (i) the improvements in water quality at two selected RBF systems, and (ii) the potential lower concentrations of DBPs, in particular, trihalomethanes (THMs), in small systems that use RBF. Two small communities in Nebraska, Auburn and Nebraska City, using …

Flow Analysis Through Collectorwell Laterals: A Case Study From Sonoma County Water Agency, California, Matteo D'Alessio, John Lucio, Ernest Williams, Donald Seymour, Jay Jasperse, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

The Sonoma County Water Agency (SWCA) uses six radial collector wells along the Russian River west of Santa Rosa, to provide water for several municipalities and water districts in north-western California. Three collector wells (1, 2, and 6) are located in the Wohler area, and three collector wells (3, 4, and 5) are located in the Mirabel area. The objective of this paper is to highlight the performance of the three collector wells located in the Mirabel area since their construction. The 2015 investigation showed a lower performance of Collectors 3 and 4 compared to their original performances after construction …

Assessing The Feasibility Of Soil Infiltration Trenches For Highway Runoff Control On The Island Of Oahu, Hawaii, Martina Sobotkova, Jaromir Dusek, Ghasem Alavi, Laxman Sharma, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

The coastal waters of Hawaii are extremely important for recreation as well as for the health of the marine environment. Non-point source pollution from storm runoff poses a great threat to surface water quality in Hawaii. The State of Hawaii Department of Transportation (HDOT) includes infiltration trenches as a best management practice (BMP) option to reduce pollution caused by stormwater runoff. HDOT guidelines state that the implementation of BMPs is needed to reduce sediment and pollutant loads to streams and the ocean. In this study, the suitability of soils adjacent to highways on Oahu for the siting of infiltration trenches …

Simulating The Impacts Of Irrigation Levels On Soybean Production In Texas High Plains To Manage Diminishing Groundwater Levels, Vaishali Sharda, Prasanna H. Gowda, Gary Marek, Isaya Kisekka, Chittaranjan Ray, Pradip Adhikari

Nebraska Water Center: Faculty Publications

There is an increasing need to strategize and plan irrigation systems under varied climatic conditions to support efficient irrigation practices while maintaining and improving the sustainability of groundwater systems. This study was undertaken to simulate the growth and production of soybean [Glycine max (L.)] under different irrigation scenarios. The objectives of this study were to calibrate and validate the CROPGRO-Soybean model under Texas High Plains’ (THP) climatic conditions and to apply the calibrated model to simulate the impacts of different irrigation levels and triggers on soybean production. The methodology involved combining short-term experimental data with long-term historical weather data (1951–2012), …

Transition Pathways To Sustainable Agricultural Water Management: A Review Of Integrated Modeling Approaches, Erin M.K. Haacker, Vaishali Sharda, Amanda M. Cano, R. Aaron Hrozencik, Agustin Nunez, Zachary Zambreski, Soheil Nozari, Garvey Engulu B, Smith, Lacey Moore, Sumit Sharma, Prasanna Gowda, Chittaranjan Ray, Meagan Schipanski, Reagan Waskom

Nebraska Water Center: Faculty Publications

Agricultural water management (AWM) is an interdisciplinary concern, cutting across traditional domains such as agronomy, climatology, geology, economics, and sociology. Each of these disciplines has developed numerous process-based and empirical models for AWM. However, models that simulate all major hydrologic, water quality, and crop growth processes in agricultural systems are still lacking. As computers become more powerful, more researchers are choosing to integrate existing models to account for these major processes rather than building new cross-disciplinary models. Model integration carries the hope that, as in a real system, the sum of the model will be greater than the parts. However, …

Gmaim: An Analytical Pipeline For Microrna Splicing Profiling Using Generative Model, Kan Liu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

MicroRNAs (miRNAs) are a class of short (~22 nt) single strand RNA molecules predominantly found in eukaryotes. Being involved in many major biological processes, miRNAs can regulate gene expression by targeting mRNAs to facilitate their degradation or translational inhibition. The imprecise splicing of miRNA splicing which introduces severe variability in terms of sequences of miRNA products and their corresponding downstream gene expression regulation. For example, to study biogenesis of miRNAs, usually, biologists can deplete a gene in the miRNA biogenesis pathway and study the change of miRNA sequences, which can cause impression of miRNAs. Although high-throughput sequencing technologies such as …

Energy Demand And Water Footprint Study Of An Agricultural Machinery Industry, Mantoam E,J., Mesfin Mekonnen, T.L. Romanelli

Daugherty Water for Food Global Institute: Faculty Publications

The intensification of agricultural production systems demands power, supplied by agricultural machinery, besides more agricultural inputs such as fertilizers, pesticides and seeds. Agricultural mechanization provides increase in the global production of food, fiber and bioenergy; and it brought economic benefits to producers, but causing larger energy consumption. Energy embodiment in agricultural machinery has been done in earlier studies, but data usually are from car industry. This study aimed to determine the energy demand and water footprint in a plant that assembles five types of agricultural machinery from a multinational manufacturer located in Piracicaba municipality in Sao Paulo state, Brazil. That …

Scale-Out Algorithm For Apache Storm In Saas Environment, Ravi Kiran Puttaswamy

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

The main appeal of the Cloud is in its cost effective and flexible access to computing power. Apache Storm is a data processing framework used to process streaming data. In our work we explore the possibility of offering Apache Storm as a software service. Further, we take advantage of the cgroups feature in Storm to divide the computing power of worker machine into smaller units to be offered to users. We predict that the compute bounds placed on the cgroups could be used to approximate the state of the workflow. We discuss the limitations of the current schedulers in facilitating …

Reducing The Tail Latency Of A Distributed Nosql Database, Jun Wu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

The request latency is an important performance metric of a distributed database, such as the popular Apache Cassandra, because of its direct impact on the user experience. Specifically, the latency of a read or write request is defined as the total time interval from the instant when a user makes the request to the instant when the user receives the request, and it involves not only the actual read or write time at a specific database node, but also various types of latency introduced by the distributed mechanism of the database. Most of the current work focuses only on reducing …

Environmental Fate And Microbial Effects Of Monensin, Lincomycin, And Sulfamethazine Residues In Soil, Matteo D'Alessio, Lisa M. Durso, Daniel N. Miller, Brian Woodbury, Chittaranjan Ray, Daniel D. Snow

Nebraska Water Center: Faculty Publications

The impact of commonly-used livestock antibiotics on soil nitrogen transformations under varying redox conditions is largely unknown. Soil column incubations were conducted using three livestock antibiotics (monensin, lincomycin and sulfamethazine) to better understand the fate of the antibiotics, their effect on nitrogen transformation, and their impact on soil microbial communities under aerobic, anoxic, and denitrifying conditions. While monensin was not recovered in the effluent, lincomycin and sulfamethazine concentrations decreased slightly during transport through the columns. Sorption, and to a limited extent degradation, are likely to be the primary processes leading to antibiotic attenuation during leaching. Antibiotics also affected microbial respiration …

Controller Evolution And Divergence: A Software Perspective, Balaji Balasubramaniam

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Successful controllers evolve as they are refined, extended, and adapted to new systems and contexts. This evolution occurs in the controller design and also in its software implementation. Model-based design and controller synthesis can help to synchronize this evolution of design and software, but such synchronization is rarely complete as software tends to also evolve in response to elements rarely present in a control model, leading to mismatches between the control design and the software.

In this thesis, we perform a first-of-its-kind study on the evolution of two popular open-source safety-critical autopilot control software -- ArduPilot, and Paparazzi, to better …

Evoalloy: An Evolutionary Approach For Analyzing Alloy Specifications, Jianghao Wang

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Using mathematical notations and logical reasoning, formal methods precisely define a program’s specifications, from which we can instantiate valid instances of a system. With these techniques, we can perform a variety of analysis tasks to verify system dependability and rigorously prove the correctness of system properties. While there exist well-designed automated verification tools including ones considered lightweight, they still lack a strong adoption in practice. The essence of the problem is that when applied to large real world applications, they are not scalable and applicable due to the expense of thorough verification process. In this thesis, I present a new …

Deploying, Improving And Evaluating Edge Bundling Methods For Visualizing Large Graphs, Jieting Wu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

A tremendous increase in the scale of graphs has been witnessed in a wide range of fields, which demands efficient and effective visualization techniques to assist users in better understandings of large graphs. Conventional node-link diagrams are often used to visualize graphs, whereas excessive edge crossings can easily incur severe visual clutter in the node-link diagram of a large graph. Edge bundling can effectively remedy visual clutter and reveal high-level graph structures. Although significant efforts have been devoted to developing edge bundling, three challenging problems remain. First, edge bundling techniques are often computationally expensive and are not easy to deploy …

Water, Energy, And Carbon Footprints Of Bioethanol From The U.S. And Brazil, Mesfin Mekonnen, Thiago L. Romanelli, Chittaranjan Ray, Arjen Y. Hoekstra, Adam Liska, Christopher M. U. Neale

Adam Liska Papers

Driven by biofuel policies, which aim to reduce greenhouse gas (GHG) emissions and increase domestic energy supply, global production and consumption of bioethanol have doubled between 2007 and 2016, with rapid growth in corn-based bioethanol in the U.S. and sugar cane-based bioethanol in Brazil. Advances in crop yields, energy use efficiency in fertilizer production, biomass-to-ethanol conversion rates, and energy efficiency in ethanol production have improved the energy balance and GHG emission reduction potential of bioethanol. In the current study, the water, energy, and carbon footprints of bioethanol from corn in the U.S. and sugar cane in Brazil were assessed. The …

Evaluation Of The Weak Constraint Data Assimilation Approach For Estimating Turbulent Heat Fluxes At Six Sites, Xinlei He, Tongren Xu, Sayed M. Bateni, C.M.U. Neale, Thomas Auligne, Shaomin Liu, Kaicun Wang, Kebiao Mao, Yunjun Yao

Daugherty Water for Food Global Institute: Faculty Publications

A number of studies have estimated turbulent heat fluxes by assimilating sequences of land surface temperature (LST) observations into the strong constraint-variational data assimilation (SC-VDA) approaches. The SC-VDA approaches do not account for the structural model errors and uncertainties in the micrometeorological variables. In contrast to the SC-VDA approaches, the WC-VDA approach (the so-called weak constraint-VDA) accounts for the effects of structural and model errors by adding a model error term. In this study, the WC-VDA approach is tested at six study sites with different climatic and vegetative conditions. Its performance is also compared with that of SC-VDA at the …

Statistical Investigation Of Road And Railway Hazardous Materials Transportation Safety, Amirfarrokh Iranitalab

Department of Civil and Environmental Engineering: Dissertations, Theses, and Student Research

Transportation of hazardous materials (hazmat) in the United States (U.S.) constituted 22.8% of the total tonnage transported in 2012 with an estimated value of more than 2.3 billion dollars. As such, hazmat transportation is a significant economic activity in the U.S. However, hazmat transportation exposes people and environment to the infrequent but potentially severe consequences of incidents resulting in hazmat release. Trucks and trains carried 63.7% of the hazmat in the U.S. in 2012 and are the major foci of this dissertation. The main research objectives were 1) identification and quantification of the effects of different factors on occurrence and …

Supporting Diverse Customers And Prioritized Traffic In Next-Generation Passive Optical Networks, Naureen Hoque

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

The already high demand for more bandwidth usage has been growing rapidly. Access network traffic is usually bursty in nature and the present traffic trend is mostly video-dominant. This motivates the need for higher transmission rates in the system. At the same time, the deployment costs and maintenance expenditures have to be reasonable. Therefore, Passive Optical Networks (PON) are considered promising next-generation access technologies. As the existing PON standards are not suitable to support future-PON services and applications, the FSAN (Full Service Access Network) group and the ITU-T (Telecommunication Standardization Sector of the International Telecommunication Union) have worked on developing …

A Comprehensive Framework To Replicate Process-Level Concurrency Faults, Supat Rattanasuksun

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Concurrency faults are one of the most damaging types of faults that can affect the dependability of today’s computer systems. Currently, concurrency faults such as process-level races, order violations, and atomicity violations represent the largest class of faults that has been reported to various Linux bug repositories. Clearly, existing approaches for testing such faults during software development processes are not adequate as these faults escape in-house testing efforts and are discovered during deployment and must be debugged.

The main reason concurrency faults are hard to test is because the conditions that allow these to occur can be difficult to replicate, …

Optical Wireless Data Center Networks, Abdelbaset S. Hamza

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Bandwidth and computation-intensive Big Data applications in disciplines like social media, bio- and nano-informatics, Internet-of-Things (IoT), and real-time analytics, are pushing existing access and core (backbone) networks as well as Data Center Networks (DCNs) to their limits. Next generation DCNs must support continuously increasing network traffic while satisfying minimum performance requirements of latency, reliability, flexibility and scalability. Therefore, a larger number of cables (i.e., copper-cables and fiber optics) may be required in conventional wired DCNs. In addition to limiting the possible topologies, large number of cables may result into design and development problems related to wire ducting and maintenance, heat …

Magnetoelectric Memory Cells With Domain-Wall-Mediated Switching, Kirill Belashchenko, Oleg Tchernyshyov, Alexey Kovalev, Dmitri Nikonov

Kirill Belashchenko Publications

A magnetoelectric memory cell with domain - wall - mediated switching is implemented using a split gate architecture . The split gate architecture allows a domain wall to be trapped within a magnetoelectric antiferromagnetic ( MEAF ) active layer . An extension of this architecture applies to multiple gate linear arrays that can offer advantages in memory density , programmability , and logic functionality . Applying a small anisotropic in - plane shear strain to the MEAF can block domain wall precession to improve reliability and speed of switching

Girls Who Code 3rd-5th, Khristina Polivanov

Honors Expanded Learning Clubs

The goal of the club is to encourage girls to be confident in themselves and their abilities while teaching them basic concepts used in computer science.

The Future Is Now Science Club, Shane Stan

Honors Expanded Learning Clubs

The Future is Now! What will our planet look like in 10, 20, 50, or even 100 years? Where will we live, what will we eat, how will we travel? Believe it or not, in the coming decades, many ideas that were once science fiction will come through to realization. With this, many of the discoveries and technologies making all of this happen are being developed right now as we go about our daily lives.

In this club, appropriately titled, The Future Is Now Science Club, students will be inspired to think larger about the present world they live in. …

Detection, Occurrence And Fate Of Emerging Contaminants In Agricultural Environments, Daniel D. Snow, David A. Cassada, Saptashati Biswas, Mohammedreza Shafieifini, Xu Li, Matteo D'Alessio, Laura Carter, J. Brett Sallach

Daugherty Water for Food Global Institute: Faculty Publications

A total of 75 papers published in 2017 were reviewed ranging from detailed descriptions of analytical methods, to fate and occurrence studies, to ecological effects and sampling techniques for a wide variety of emerging contaminants likely to occur in agricultural environments. New methods and studies on veterinary pharmaceuticals, steroids, antibiotic resistance genes, and engineered nanoparticles agricultural environments continue to expand our knowledge base on the occurrence and potential impacts of these compounds. This review is divided into the following sections: Introduction, Analytical Methods, Fate and Occurrence, Pharmaceutical Metabolites, Anthelmintics, Antibiotic Resistance Genes, and Engineered Nanomaterials.

Minutes & Seconds: The Scientists, Patrick Aievoli

Zea E-Books Collection

Minutes & Seconds, is a captivating intelligible read for those who strive to understand where the “what if” moment has gone. Succeeding his other captivating books, Aievoli’s deep introspective lens dials his readers in to awaken the proverbial sleeping giant inside of our consciousness. He designs an insightful exciting romp through the surreal landscape of our society and illustrates how various pioneers have lead us to a crossroads. I’m truly impressed with Aievoli’s perspicacious comprehension of where digital has taken us through the hands of these select individuals. --Sequoyah Wharton

In creating Minutes & Seconds, Aievoli has assembled an interesting …

Report Of Community Conversations About Gender Roles In Livestock, Mamusha Lemma, Wole Kinati, Annet Mulema, Zekarias Bassa, Abiro Tigabe, Hiwot Desta, Mesfin Mekonnen, Tadious Asfaw

Daugherty Water for Food Global Institute: Faculty Publications

The International Livestock Research Institute (ILRI) and the International Center for Research in the Dry Areas (ICARDA) gender and animal health teams facilitated community conversations (CCs) about gender roles in livestock husbandry in three districts in the Southern Nations, Nationalities and Peoples Region (SNNPR) and Amhara region from 30 May–07 June 2018. These dictricts were: Doyogena (Hawora Arara and Ancha Sadicha kebeles) of SNNPR from 30 and 31 May; and Menz Gera district (Sine Amba kebele) and Menz Mama district (Key Afer kebele) of Amhara from June 6–7. In Doyogena, the team held the conversations in farmer training centres (FTCs) …

Assessing The Relationship Between Groundwater Nitrate Concentrations And Environmental Variables Through Repeat Sampling And Statistical Machine Learning: Dutch Flats, Nebraska, Martin Wells

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Nitrate-contaminated aquifers are common in landscapes dominated by agricultural land use. Health concerns related to consuming nitrate-contaminated groundwater are well documented and continued research aimed at decreasing concentrations is critical. A 1990s U.S. Geological Survey (USGS) study focused on groundwater characteristics in the Dutch Flats area of western Nebraska. Agricultural-related practices were determined to largely influence groundwater recharge and nitrate concentrations ([NO₃^-]). Since the conclusion of the USGS study, a transition to more efficient irrigation technology has been observed in this region. The emphasis of this 2016 study was to resample several well nests examined in 1998 …

Higher-Level Consistencies: Where, When, And How Much, Robert J. Woodward

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Determining whether or not a Constraint Satisfaction Problem (CSP) has a solution is NP-complete. CSPs are solved by inference (i.e., enforcing consistency), conditioning (i.e., doing search), or, more commonly, by interleaving the two mechanisms. The most common consistency property enforced during search is Generalized Arc Consistency (GAC). In recent years, new algorithms that enforce consistency properties stronger than GAC have been proposed and shown to be necessary to solve difficult problem instances.

We frame the question of balancing the cost and the pruning effectiveness of consistency algorithms as the question of determining where, when, and how much of a higher-level …

Cover Crops Have Negligible Impact On Soil Water In Nebraska Maize–Soybean Rotation, J. Burdette Barker, Derek M. Heeren, Katja Koehler-Cole, Charles Shapiro, Humberto Blanco-Canqui, Roger W. Elmore, Christopher A. Proctor, Suat Irmak, Charles A. Francis, Tim M. Shaver, Ali T. Mohammed

Biological Systems Engineering: Papers and Publications

One perceived cost of integrating winter cover cropping in maize (Zea mays L.) and soybean [Glycine max (L.) Merr.] rotation systems is the potential negative impact on soil water storage available for primary crop production. The objective of this 3-year study was to evaluate the effects of winter cover crops on soil water storage and cover crop biomass production following no-till maize and soybean rotations. Locations were near Brule (west-central), Clay Center (south-central), Concord (northeast), and Mead (east-central), Nebraska, United States. Treatments included crop residue only (no cover crop) and a multi-species cover crop mix, both broadcast-seeded before …

Scaling Up An Infrastructure For Controlled Experimentation With Testing Techniques, Wayne D. Motycka

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Software testing research often involves reproducing previous experimental results. Previous work created a repository infrastructure for containment and dissemination of testable research subjects using a private centralized storage mechanism for hosting these test subject archives. While this is a good way to store these subjects it can be inefficient when the size of subjects increases or the number of versions of the subject’s source code is large. The delivery of these large subjects from a centralized repository can be quite large and on occasion may not succeed requiring the user to repeat the download request. Coupled with the limited resources …