Engineering Commons^™

The Effect Of Manure Application Method On Nutrient And Microbial Runoff Transport And Soil Biological Health Indicators, Nicole R. Schuster

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Two projects were completed to provide significant new information to the agricultural industry regarding the environmental implications and soil health impacts related to land application of swine manure. The first study reports on the runoff transport of nutrients and microbials as affected by manure application method and time following application. The second study provides information about the effect of application method and time following application on soil health indicators using arthropod abundance and diversity as a biological indicator. The information gained through these studies will provide beneficial information to the pork industry on the impact of manure application method and …

Transforming C Openmp Programs For Verification In Civl, Michael Rogers

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

There are numerous way to express parallelism which can make it challenging for developers to verify these programs. Many tools only target a single dialect but the Concurrency Intermediate Verification Language (CIVL) targets MPI, Pthreads, and CUDA. CIVL provides a general concurrency model that can represent pro- grams in a variety of concurrency dialects. CIVL includes a front-end that support all of the dialects mentioned above. The back-end is a verifier that uses model checking and symbolic execution to check standard properties.

In this thesis, we have designed and implemented a transformer that will take C OpenMP programs and transform …

Integration And Delivery Of Interferometric Synthetic Aperture Radar [Insar] Data Into Stormwater Planning Within Karst Terranes, Brian Bruckno, Andrea Vaccari, Edward Hoppe, Scott Acton, Elizabeth Campbell

Department of Earth and Atmospheric Sciences: Faculty Publications

As part of two USDOT-funded studies focused on the development of satellite-based Interferometric Synthetic Aperture Radar (InSAR) technology, the researchers integrated InSAR-derived point cloud data into the transportation design process to optimize the location of a stormwater management system in a karst terrane. After initial validation, the InSAR data (over 1.67 million data points comprising various “scatterers”) were brought into a GIS dataframe and georeferenced to locations of known sinkholes. This dataset was then used to evaluate karst hazard within a 40x40km data frame located in the Valley and Ridge Province of Virginia. The group identified systematic kinematic differences in …

Mitigating The Risk Of Extreme Water Scarcity And Dependency: The Case Of Jordan, Joep F. Schyns, Arwa Hamaideh, Arjen Y. Hoekstra, Mesfin Mekonnen, Marlou Schyns

Daugherty Water for Food Global Institute: Faculty Publications

Jordan faces great internal water scarcity and pollution, conflict over trans-boundary waters, and strong dependency on external water resources through trade. This paper analyzes these issues and subsequently reviews options to reduce the risk of extreme water scarcity and dependency. Based on estimates of water footprint, water availability, and virtual water trade, we find that groundwater consumption is nearly double the groundwater availability, water pollution aggravates blue water scarcity, and Jordan’s external virtual water import dependency is 86%. The review of response options yields 10 ingredients for a strategy for Jordan to mitigate the risks of extreme water scarcity and …

Mutations Of Adjacent Amino Acid Pairs Are Not Always Independent, Jyotsna Ramanan, Peter Revesz

CSE Conference and Workshop Papers

Evolutionary studies usually assume that the genetic mutations are independent of each other. This paper tests the independence hypothesis for genetic mutations with regard to protein coding regions. According to the new experimental results the independence assumption generally holds, but there are certain exceptions. In particular, the coding regions that represent two adjacent amino acids seem to change in ways that sometimes deviate significantly from the expected theoretical probability under the independence assumption.

A Computational Translation Of The Phaistos Disk, Peter Revesz

CSE Conference and Workshop Papers

For over a century the text of the Phaistos Disk remained an enigma without a convincing translation. This paper presents a novel semi-automatic translation method that uses for the first time a recently discovered connection between the Phaistos Disk symbols and other ancient scripts, including the Old Hungarian alphabet. The connection between the Phaistos Disk script and the Old Hungarian alphabet suggested the possibility that the Phaistos Disk language may be related to Proto-Finno-Ugric, Proto-Ugric, or Proto-Hungarian. Using words and suffixes from those languages, it is possible to translate the Phaistos Disk text as an ancient sun hymn, possibly connected …

A Computational Model Of The Spread Of Ancient Human Populations Based On Mitochondrial Dna Samples, Peter Revesz

CSE Conference and Workshop Papers

The extraction of mitochondrial DNA (mtDNA) from ancient human population samples provides important data for the reconstruction of population influences, spread and evolution from the Neolithic to the present. This paper presents a mtDNA-based similarity measure between pairs of human populations and a computational model for the evolution of human populations. In a computational experiment, the paper studies the mtDNA information from five Neolithic and Bronze Age populations, namely the Andronovo, the Bell Beaker, the Minoan, the Rössen and the Únětice populations. In the past these populations were identified as separate cultural groups based on geographic location, age and the …

A-Maze-D: Advanced Maze Development Kit Using Constraint Databases, Shruti Daggumarti, Peter Revesz, Corey Svehla

CSE Conference and Workshop Papers

In this paper, we describe the A-Maze-D system which shows that constraint databases can be applied conveniently and efficiently to the design of maze games. A-Maze-D provides a versatile set of features by a combination of a MATLAB library and the MLPQ constraint database system. A-Maze-D is the first system that uses constraint databases to build maze games and opens new ideas in video game development.

A Computational Study Of The Evolution Of Cretan And Related Scripts, Peter Revesz

CSE Conference and Workshop Papers

Crete was the birthplace of several ancient writings, including the Cretan Hieroglyphs, the Linear A and the Linear B scripts. Out of these three only Linear B is deciphered. The sound values of the Cretan Hieroglyph and the Linear A symbols are unknown and attempts to reconstruct them based on Linear B have not been fruitful. In this paper, we compare the ancient Cretan scripts with four other Mediterranean and Black Sea scripts, namely Phoenician, South Arabic, Greek and Old Hungarian. We provide a computational study of the evolution of the three Cretan and four other scripts. This study encompasses …

Bioinformatics Approaches To Single-Cell Analysis In Developmental Biology, Dicle Yalcin, Zeynep M. Hakguder, Hasan H. Otu

Department of Electrical and Computer Engineering: Faculty Publications

Individual cells within the same population show various degrees of heterogeneity, which may be better handled with single-cell analysis to address biological and clinical questions. Single-cell analysis is especially important in developmental biology as subtle spatial and temporal differences in cells have significant associations with cell fate decisions during differentiation and with the description of a particular state of a cell exhibiting an aberrant phenotype. Biotechnological advances, especially in the area of microfluidics, have led to a robust, massively parallel and multi-dimensional capturing, sorting, and lysis of single-cells and amplification of related macromolecules, which have enabled the use of imaging …

Three-Dimensional Scaffolds Of Graphene, Carbon Nanotubes And Transition-Metal Oxides For Applications In Electronics, Sensors And Energy Storage, Gilbert N. Mbah

Department of Chemistry: Dissertations, Theses, and Student Research

Electronics, sensors and energy storage devices are the new waves behind economic development, security and communication¹. Engineering small sizes of electronic, sensors and energy storage devices is the hurdle limiting efficient, portable and vast applications of Nano-devices for economic, security and communication advancement². Silicon the major material used in transistors has approached its limit to fabricated Nano-devices³. The discovery of free standing, one atomic layer thick and two-dimensional graphene sheets with high conductivity, inert, high specific surface area, stable and high tensile strength material in 2004 has shown capabilities to replaced silicon in electronics, …

Enabling Distributed Scientific Computing On The Campus, Derek J. Weitzel

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Campus research computing has evolved from many small decentralized resources, such as individual desktops, to fewer, larger centralized resources, such as clusters. This change has been necessitated by the increasing size of researcher's workloads, but this change has harmed the researcher's user experience. We propose to improve the user experience on the computational resources by creating an overlay cluster they are able to control. This overlay should transparently scale to national cyberinfrastructure as the user's demands increase.

We explore methods for improving the user experience when submitting jobs on a campus grid. To this end, we created a remote submission …

Multiphysics Modeling To Enhance Understanding Of Microwave Heating Of Food In Domestic Ovens, Jiajia Chen

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Nonuniform heating is the biggest issue in the microwave heating of prepared meals. Multiphysics based models are promising tools to improve microwave heating uniformity by properly designing the food product. However, limited availability of accurate temperature-dependent material properties, inadequate model prediction accuracy, and high computational power and complexity in model development are three gaps that greatly limited the application of these models in the food industry.

To fill in the gaps, firstly, we developed a multitemperature calibration protocol to measure temperature-dependent dielectric properties (dielectric constant and loss factor). The temperature-dependent dielectric and thermal (thermal conductivity and specific heat capacity) properties …

Robust And Real-Time Stereo Matching On Parallel Graphics Hardware Using Gradient-Based Disparity Refinement, Jedrzej Kowalczuk

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Computer vision attempts to provide camera-equipped machines with visual perception, i.e., the capability to comprehend their surroundings through the analysis and understanding of images. The ability to perceive depth is a vital component of visual perception that enables machines to interpret the three-dimensional structure of their surroundings and allows them to navigate through the environment. In computer vision, depth perception is achieved via stereo matching, a process that identifies correspondences between pixels in images acquired using a pair of horizontally offset cameras. It is possible to calculate depths from correspondences or, more specifically, the positional offsets (disparities) between pixels in …

Should Nuclear Energy Be More Heavily Incorporated By The United States?, Matthew Romer

Nebraska College Preparatory Academy: Senior Capstone Projects

America is involved in one of the biggest races towards electrical efficiency, cleanliness, and productivity. Nuclear energy is a major part of the U.S.’s non-­‐carbon emitting electricity, and has strict regulations for management. However, this form of energy has been on the decline in the past couple decades due to cost and competition with cheaper, less clean methods. Is nuclear energy feasible enough to continue?

Visual Analytics For Large Communication Trace Data, Jieting Wu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Executions of modern parallel programs often yield complex communications among compute nodes of large-scale clusters of workstations or supercomputers. Analyzing communication patterns is becoming increasingly critical to performance optimiza- tion. As the scale and complexity of parallel applications drastically increases, visu- alization has become a feasible means to conduct analysis of massive communication patterns. However, most visualization tools fall short in showing comprehensive dy- namic communication graph and addressing the scalability issue. Our solution for analyzing dynamic communication patterns is based on an analytics framework cou- pled with a new visualization technique, named CommGram [29], that provides a flexible solution …

Nebraska’S Natural Resources Districts: An Assessment Of A Large-Scale Locally Controlled Water Governance Framework, Ann Bleed, Christina Hoffman Babbitt

Daugherty Water for Food Global Institute: Faculty Publications

In 1972 the State of Nebraska created the Natural Resources Districts (NRDs) to consolidate a multitude of single-purpose local natural resource districts into a more comprehensive, holistic, and efficient natural resources governance system. While consolidation and efficiency was important, so was the concept of maintaining local control. Thus, Nebraska rejected the governance framework of a single top-down state agency, preferring to create NRDs that are each governed by a locally elected board. The locally elected governing boards of the NRDs were given broad authorities over many of the state’s natural resources, including groundwater. Such a governance structure was, and to …

Sustainability, Efficiency And Equitability Of Water Consumption And Pollution In Latin America And The Caribbean, Mesfin Mekonnen, Markus Pahlow, Maite M. Aldaya, Erika Zarate

Daugherty Water for Food Global Institute: Faculty Publications

This paper assesses the sustainability, efficiency and equity of water use in Latin America and the Caribbean (LAC) by means of a geographic Water Footprint Assessment (WFA). It aims to provide understanding of water use from both a production and consumption point of view. The study identifies priority basins and areas from the perspectives of blue water scarcity, water pollution and deforestation. Wheat, fodder crops and sugarcane are identified as priority products related to blue water scarcity. The domestic sector is the priority sector regarding water pollution from nitrogen. Soybean and pasture are priority products related to deforestation. We estimate …

Clustering Header Categories Extracted From Web Tables, George Nagy, David W. Embley, Mukkai Krishnamoorthy, Sharad C. Seth

CSE Conference and Workshop Papers

Revealing related content among heterogeneous web tables is part of our long term objective of formulating queries over multiple sources of information. Two hundred HTML tables from institutional web sites are segmented and each table cell is classified according to the fundamental indexing property of row and column headers. The categories that correspond to the multi-dimensional data cube view of a table are extracted by factoring the (often multi-row/column) headers. To reveal commonalities between tables from diverse sources, the Jaccard distances between pairs of category headers (and also table titles) are computed. We show how about one third of our …

Sci Pop Talks! Presenter Guidelines, Kiyomi D. Deards, Raychelle Burks

UNL Libraries: Faculty Publications

Presenter guidelines for the nUniversity of Nebraska-Lincoln (UNL) Sci Pop! Talks series.

2015 Nebraska Groundwater Quality Monitoring Report

Nebraska Department of Environmental Quality: Reports

The 2001 Nebraska Legislature passed LB329 (Neb. Rev. Stat. §46-1304) which, in part, directed the Nebraska Department of Environmental Quality (NDEQ) to report on groundwater quality monitoring in Nebraska. Reports have been issued annually since December 2001. The text of the statute applicable to this report follows: “The Department of Environmental Quality shall prepare a report outlining the extent of ground water quality monitoring conducted by natural resources districts during the preceding calendar year. The department shall analyze the data collected for the purpose of determining whether or not ground water quality is degrading or improving and shall present the …

Detection, Occurrence And Fate Of Emerging Contaminants In Agricultural Environments, Daniel D. Snow, David A. Cassada, Shannon L. Bartelt-Hunt, Xu Li, Matteo D'Alessio, Rachel Levine, Yun Zhang, J. Brett Sallach

Nebraska Water Center: Faculty Publications

A total of 43 papers published in 2014 were reviewed ranging from detailed descriptions of analytical methods, to fate and occurrence studies, to measuring and predicting biological effects for a wide variety of emerging contaminants likely to occur in agricultural environments. New methods and studies on veterinary pharmaceuticals, natural and synthetics steroids, and antibiotic resistance genes in agricultural environments continue to expand our knowledge base on the occurrence and potential impacts of these compounds. This review is divided into the following sections: Introduction, Analytical Methods, Occurrence and Fate, Antibiotic Resistance Genes, and Risk Assessment.

Nephrotoxic Contaminants In Drinking Water And Urine, And Chronic Kidney Disease In Rural Sri Lanka, Tewodros Rango, Marc Jeuland, Herath Manthrithilake, Peter G. Mccornick

Daugherty Water for Food Global Institute: Faculty Publications

Chronic kidney disease of unknown (“u”) cause (CKDu) is a growing public health concern in Sri Lanka. Prior research has hypothesized a link with drinking water quality, but rigorous studies are lacking. This study assesses the relationship between nephrotoxic elements (namely arsenic (As), cadmium (Cd), lead (Pb), and uranium (U)) in drinking water, and urine samples collected from individuals with and/or without CKDu in endemic areas, and from individuals without CKDu in nonendemic areas. All water samples—from a variety of source types (i.e., shallow and deep wells, springs, piped, and surface water)—contained extremely low concentrations of nephrotoxic elements, and all …

Demonstration Of A Daily High-Resolution (375-M) Alexi Evapotranspiration Product For The Nena Region, Christopher Hain, Martha C. Anderson, Mitch Schull, Christopher M.U. Neale

Daugherty Water for Food Global Institute: Faculty Publications

While the current constellation of geostationary sensors provides near-global coverage (60N to 60S) – it requires merging data from 7 satellites [resolving time differences; view angles; atmospheric correction]. Polar orbiting sensors such as MODIS and VIIRS provide daily global coverage of LST at higher resolutions than GEO sensors but at only two times per day.

Assessment Of Village Chicken Production Systems In Kambata Tambaro And Wolaita Zones, Snnpr, Ethiopia, Aman Getiso, Fitsum Tessema, Mesfin Mekonnen, Addisu Jimma, Bereket Zeleke

Daugherty Water for Food Global Institute: Faculty Publications

The study was conducted in four woredas (Damot Gale,Of a, Angacha and Hadero Tunto) the first two of them found in Wolaita zone and two of them in Kambata Tambaro Zone of SNNPR, Ethiopia respectively. A cross-sectional survey was conducted in the study areas to assess village chicken production systems, productive and reproductive performance of village chicken and identifying constraints to village chicken production. Stratified random sampling technique was used to select 240 farming households and administer a pre-tested and structured questionnaire. The results showed that the mean age of interviewed farmers was 37.8±9.3 years; average family size & chicken …

Yield Gap Analysis Of Field Crops: Methods And Case Studies, V. O. Sadras, Kenneth Cassman, Patricio Grassini, W. G.M. Bastiaanssen, A. G. Laborte, A. E. Milne, G. Sileshi, P. Steduto

Daugherty Water for Food Global Institute: Faculty Publications

The challenges of global agriculture have been analysed exhaustively and the need has been established for sustainable improvement in agricultural production aimed at food security in a context of increasing pressure on natural resources. Whereas the importance of R&D investment in agriculture is increasingly recognised, better allocation of limited funding is essential to improve food production. In this context, the common and often large gap between actual and attainable yield is a critical target. Realistic solutions are required to close yield gaps in both small and large scale cropping systems worldwide; to make progress in this direction, we need (1) …

Sustainability And Economic Analysis Of Propylene Carbonate And Polypropylene Carbonate Production Processes Using Co2 And Propylene Oxide, Yaşar Demirel

Yaşar Demirel Publications

Currently, the industrially important polycarbonates are synthesized from bisphenol A and diphenyl carbonate, which are highly toxic and hence other feasible alternatives are preferable. Following the considerable advances on the catalyst for the synthesis of carbonates from CO₂ and propylene oxide (PO), industrial scale processes for the productions of propylene carbonate (PC) and polypropylene carbonate (PPC) have been designed and simulated with sustainability and economic analyses. The CO₂ is supplied by a nearby bioethanol plant, while the PO from a petrochemical process. The first part of the study is for the production of 200 million lb/year cyclic PC …

Multiferroic Tunnel Junctions And Ferroelectric Control Of Magnetic State At Interface, Y. W. Yin, M. Raju, W. J. Hu, John D. Burton, Y.-M. Kim, A. Y. Borisevich, S. J. Pennycook, S. M. Yang, T. W. Noh, Alexei Gruverman, X. G. Li, Z. D. Zhang, Evgeny Y. Tsymbal, Qi Li

Alexei Gruverman Publications

As semiconductor devices reach ever smaller dimensions, the challenge of power dissipation and quantum effect place a serious limit on the future device scaling. Recently, a multiferroic tunnel junction (MFTJ) with a ferroelectric barrier sandwiched between two ferromagnetic electrodes has drawn enormous interest due to its potential applications not only in multi-level data storage but also in electric field controlled spintronics and nanoferronics. Here, we present our investigations on four-level resistance states, giant tunneling electroresistance (TER) due to interfacial magnetoelectric coupling, and ferroelectric control of spin polarized tunneling in MFTJs. Coexistence of large tunneling magnetoresistance and TER has been observed …

Voigt, Reuss, Hill, And Self-Consistent Techniques For Modeling Ultrasonic Scattering, Christopher M. Kube, Joseph A. Turner

Department of Mechanical and Materials Engineering: Faculty Publications

An elastic wave propagating in a metal loses a portion of its energy from scattering caused by acoustic impedance differences existing at the boundaries of anisotropic grains. Theoretical scattering models capture this phenomena by assuming the incoming wave is described by an average elastic moduli tensorC_0ijkl (x) that is perturbed by a grain with elasticityC_ijkl (x ') where the scattering event occurs when x = x’. Previous models have assumed that C_0ijkl (x) is the Voigt average of the singlecrystal elastic moduli tensor. However, this assumption …

Acoustic Nonlinearity Parameters For Transversely Isotropic Polycrystalline Materials, Christopher M. Kube, Joseph A. Turner

Department of Mechanical and Materials Engineering: Faculty Publications

This article considers polycrystalline materials with macroscopic elastic anisotropy and the effect of the anisotropy on the quadratic nonlinearity parameter used to describe second harmonic generation in solids. The polycrystal is assumed to have transversely isotropic elastic symmetry, which leads to a directional dependence of the nonlinearity parameters. Additionally, the anisotropy leads to second harmonic generation from an input shear wave. Estimates of the longitudinal and shear wave nonlinearity parameters are given as a function of single-crystal elastic constants, macroscopic anisotropy constants, and propagation direction. An inverse model is presented that relates measured nonlinearity parameters to the macroscopic anisotropy constants. …