Engineering Commons^™

A Versatile Python Package For Simulating Dna Nanostructures With Oxdna, Kira Threlfall

Computer Science and Computer Engineering Undergraduate Honors Theses

The ability to synthesize custom DNA molecules has led to the feasibility of DNA nanotechnology. Synthesis is time-consuming and expensive, so simulations of proposed DNA designs are necessary. Open-source simulators, such as oxDNA, are available but often difficult to configure and interface with. Packages such as oxdna-tile-binding pro- vide an interface for oxDNA which allows for the ability to create scripts that automate the configuration process. This project works to improve the scripts in oxdna-tile-binding to improve integration with job scheduling systems commonly used in high-performance computing environments, improve ease-of-use and consistency within the scripts compos- ing oxdna-tile-binding, and move …

Multifunctional Programmable Self-Assembled Nanoparticles In Nanomedicine, Yoshie Sakamaki

Graduate Theses and Dissertations

Developing methodologies to control the architecture of nanoparticles (NPs) at the atomic level prevents their inhomogeneity and leads to a variety of expected functions. Rationally designed nanoparticles can either be programmed or crystallized structures into pre-determined structures achieving tunable particle pore size and physiochemistry. In this dissertation, two broad classes of multifunctional nanoparticles are developed, metal-organic frameworks and DNA-NP aggregates.

Metal-organic frameworks are a novel class of highly porous crystalline materials built from organic linkers and metal cluster-based secondary building units. However, applications in bioremediation have not been developed very well especially in applications regarding drug delivery systems (DDS). The …

Two-Dimensional Black Phosphorus For Terahertz Emission And Near-Field Radiative Heat Transfer, Mahmudul Hasan Doha

Graduate Theses and Dissertations

The main focus of this work is to investigate two potential optical and optoelectronic applications of black phosphorus (BP): the near-field radiative heat transfer in plasmonic heterostructures with graphene and terahertz emission from multi-layer BP photoconductive antennas. When the separation distance between graphene-black phosphorene is much smaller than or comparable to the thermal wavelength at different temperatures, a near-field radiation heat transfer breaks the Planck blackbody limit. The magnitude of the near-field radiation enhancement acutely depends on the gate voltage, doping, and vacuum gap of the graphene and BP pair. The strong near-field radiation heat transfer enhancement of the specific …

Applications Of Cathodoluminescence In Plasmonic Nanostructures And Ultrathin Inas Quantum Layers, Qigeng Yan

Graduate Theses and Dissertations

Due to the advanced focusing ability, characterization methods based on the electron-beam excitation have been broadly applied to investigate nanomaterials. Structural or compositional information is commonly acquired using electron microscopes. Moreover, taking advantage of the super spatial resolution of the focused electron beam, optical properties of nanomaterials can be also obtained. Herein, general concepts and processes of the interaction between electrons and materials are studied. Two specific optical nanomaterials, including plasmonic nanostructures and semiconductor quantum layers, are investigated by the cathodoluminescence (CL) measurement.

Surface plasmonic resonance can be generated when high-energy electrons strike the interface between the dielectric medium and …

Opto-Thermal Characterization Of Plasmon And Coupled Lattice Resonances In 2-D Metamaterial Arrays, Vinith Bejugam

Graduate Theses and Dissertations

Growing population and climate change inevitably requires longstanding dependency on sustainable sources of energy that are conducive to ecological balance, economies of scale and reduction of waste heat. Plasmonic-photonic systems are at the forefront of offering a promising path towards efficient light harvesting for enhanced optoelectronics, sensing, and chemical separations. Two-dimensional (2-D) metamaterial arrays of plasmonic nanoparticles arranged in polymer lattices developed herein support thermoplasmonic heating at off-resonances (near infrared, NIR) in addition to regular plasmonic resonances (visible), which extends their applicability compared to random dispersions. Especially, thermal responses of 2-D arrays at coupled lattice resonance (CLR) wavelengths were comparable …

Study Of Plasmonic Properties Of The Gold Nanorods In The Visible To Near Infrared Light Regime, Pijush Kanti Ghosh

Graduate Theses and Dissertations

Nanostructures of noble metals show unique plasmonic behavior in the visible to near-infrared light range. Gold nanostructures exhibit a particularly strong plasmonic response for these wavelengths of light. In this study we have investigated optical enhancement and absorption of gold nanorods with different thickness using finite element method simulations. This study reports on the resonance wavelength of the sharp-corner and round-corner rectangles of constant length 100 nm and width 60 nm. The result shows that resonance wavelength depends on the polarization of the incident light; there also exists a strong dependence of the optical enhancement and absorption on the thickness …

Self-Assembly Of Gold Nanosphere Dimers By Inertial Force, George Andrew Christopher Sakhel

Graduate Theses and Dissertations

The morphology and composition of a nanoparticle (NP) play a critical role in determining the NP's properties and function. To date, researchers have created a myriad of NPs of different shapes, sizes, and compositions with interesting attributes and applications ushering a revolution in medicine, electronics, microscopy, and microfluidics.

In this study, gold (Au) nanosphere dimers (NSDs) have been synthesized through a novel self-assembly method. These particles were created from Au NPs mono-dispersed in aqueous solution via a process of centrifugation and capping agent replacement. Au NSDs consist of two Au NPs combined together with minimal gaps between them. Optical spectral …

Refractive Index Chemical Sensing With Noble Metal Nanoparticles, Phillip Blake

Graduate Theses and Dissertations

Chemical sensing is a key component in modern society, especially in engineering applications. Because of their widespread impact, improvements to chemical sensors are a significant area of research. One class of sensors, plasmonic sensors, is being heavily researched because of their ability to detect low levels of analyte in near real time without destroying the analyte. This work studies a new class of plasmonic sensor that utilizes diffractive coupling to improve sensor performance. Specifically, this work outlines the first study of diffractive coupling sensors with typical nanoparticle shapes. Sensitivity of this new class of sensor is directly compared to typical …