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University of Massachusetts Amherst

2007

Dynamic flux balance analysis

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Genome-Scale Analysis Of Saccharomyces Cerevisiae Metabolism And Ethanol Production In Fed-Batch Culture, Radhakrishnan Mahadevan, Michael A. Henson Aug 2007

Genome-Scale Analysis Of Saccharomyces Cerevisiae Metabolism And Ethanol Production In Fed-Batch Culture, Radhakrishnan Mahadevan, Michael A. Henson

Michael A Henson

A dynamic flux balance model based on a genome-scale metabolic network reconstruction is developed for in silico analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture. Metabolic engineering strategies previously identified for their enhanced steady-state biomass and/or ethanol yields are evaluated for fed-batch performance in glucose and glucose/xylose media. Dynamic analysis is shown to provide a single quantitative measure of fed-batch ethanol productivity that explicitly handles the possible tradeoff between the biomass and ethanol yields. Productivity optimization conducted to rank achievable fed-batch performance demonstrates that the genetic manipulation strategy and the fed-batch operating policy should be considered simultaneously. …