Engineering Commons^™

Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

In this thesis, we present the design and implementation of a stand-alone tool for metabolic simulations. This system is able to integrate custom-built SBML models along with external user’s input information and produces the estimation of any reactants participating in the chain of the reactions in the provided model, e.g., ATP, Glucose, Insulin, for the given duration using numerical analysis and simulations. This tool offers the food intake arguments in the calculations to consider the personalized metabolic characteristics in the simulations. The tool has also been generalized to take into consideration of temporal genomic information and be flexible for simulation …

Parallelization Of A Three-Dimensional Full Multigrid Algorithm To Simulate Tumor Growth, Dylan Goodin, Chin F. Ng, Hermann B. Frieboes

Commonwealth Computational Summit

We present the performance gains of an openMP implementation of a fully adaptive nonlinear full multigrid (FMG) algorithm to simulate three-dimensional multispecies desmoplastic tumor growth on computer systems of varying processing capabilities. The FMG algorithm is applied to solve a recently published thermodynamic mixture model that uses a diffuse interface approach with fourth-order reaction-advection-diffusion PDEs (Cahn-Hilliard-type equations) that are coupled, nonlinear, and numerically stiff. The model includes multiple cell species and extracellular matrix (ECM), with adhesive and elastic energy contributions in chemical potential terms, as well as including blood and lymphatic vessels represented as continuous vasculatures. Advection-reaction-diffusion PDEs are employed …

Integrated Environment And Proximity Sensing For Uav Applications, Shawn S. Brackett

Electronic Theses and Dissertations

As Unmanned Aerial Vehicle (UAV), or “drone” applications expand, new methods for sensing, navigating and avoiding obstacles need to be developed. The project applies an Extended Kalman Filter (EKF) to a simulated quadcopter vehicle though Matlab in order to estimate not only the vehicle state but the world state around the vehicle. The EKF integrates multiple sensor readings from range sensors, IMU sensors, and radiation sensors and combines this information to optimize state estimates. The result is an estimated world map to be used in vehicle navigation and obstacle avoidance.

The simulation handles the physics behind the vehicle flight. As …

Full Simulation For The Qweak Experiment At 1.16 And 0.877 Gev And Their Impact On Extracting The Pv Asymmetry In The N→Δ A Transition, Hend Abdullah Nuhait

Doctoral Dissertations

The Qweak project is seeking to find new physics beyond the Standard Model. It is aimed to measure the weak charge of the proton, which has never been measured, at 4% precision at low momentum transfer. The experiment is performed by scattering electrons from protons and exploiting parity violation in the weak interaction at low four-momentum transfer.

In this experiment, two measurements were considered: which are elastic and inelastic. The elastic is to measure the proton's weak charge. In addition, the inelastic asymmetry measurement, which will extract the low energy constant dΔ. That measurement works in the neutral current …

On The Simulation And Mitigation Of Anisoplanatic Optical Turbulence For Long Range Imaging, Russell C. Hardie, Daniel A. Lemaster

Russell C. Hardie

We describe a numerical wave propagation method for simulating long range imaging of an extended scene under anisoplanatic conditions. Our approach computes an array of point spread functions (PSFs) for a 2D grid on the object plane. The PSFs are then used in a spatially varying weighted sum operation, with an ideal image, to produce a simulated image with realistic optical turbulence degradation. To validate the simulation we compare simulated outputs with the theoretical anisoplanatic tilt correlation and differential tilt variance. This is in addition to comparing the long- and short-exposure PSFs, and isoplanatic angle. Our validation analysis shows an …

Simulation Of Anisoplanatic Imaging Through Optical Turbulence Using Numerical Wave Propagation With New Validation Analysis, Russell C. Hardie, Jonathan D. Power, Daniel A. Lemaster, Douglas R. Droege, Szymon Gladysz, Santasri Bose-Pillai

Russell C. Hardie

We present a numerical wave propagation method for simulating imaging of an extended scene under anisoplanatic conditions. While isoplanatic simulation is relatively common, few tools are specifically designed for simulating the imaging of extended scenes under anisoplanatic conditions. We provide a complete description of the proposed simulation tool, including the wave propagation method used. Our approach computes an array of point spread functions (PSFs) for a two-dimensional grid on the object plane. The PSFs are then used in a spatially varying weighted sum operation, with an ideal image, to produce a simulated image with realistic optical turbulence degradation. The degradation …

On The Simulation And Mitigation Of Anisoplanatic Optical Turbulence For Long Range Imaging, Russell C. Hardie, Daniel A. Lemaster

Electrical and Computer Engineering Faculty Publications

We describe a numerical wave propagation method for simulating long range imaging of an extended scene under anisoplanatic conditions. Our approach computes an array of point spread functions (PSFs) for a 2D grid on the object plane. The PSFs are then used in a spatially varying weighted sum operation, with an ideal image, to produce a simulated image with realistic optical turbulence degradation. To validate the simulation we compare simulated outputs with the theoretical anisoplanatic tilt correlation and differential tilt variance. This is in addition to comparing the long- and short-exposure PSFs, and isoplanatic angle. Our validation analysis shows an …

Trim Tuning Of Sps-Series Dqw Crab Cavity Prototypes, S. Verdú-Andrés, J. Skaritka, Q. Wu, A. Ratti, S. Baurac, C. H. Boulware, T. Grimm, J. Yancey, W. Clemens, E. A. Mcewen, H. Park

Physics Faculty Publications

The final steps in the manufacturing of a superconducting RF cavity involve careful tuning before the final welds to match the target frequency as fabrication tolerances may introduce some frequency deviations. The target frequency is chosen based on analysis of the shifts induced by remaining processing steps including acid etching and cool down. The baseline fabrication of a DQW crab cavity for the High Luminosity LHC (HL-LHC) envisages a first tuning before the cavity subassemblies are welded together. To produce a very accurate final result, subassemblies are trimmed to frequency in the last machining steps, using a clamped cavity assembly …

A Predictor Analysis Framework For Surface Radiation Budget Reprocessing Using Design Of Experiments, Patricia Allison Quigley

Engineering Management & Systems Engineering Theses & Dissertations

Earth’s Radiation Budget (ERB) is an accounting of all incoming energy from the sun and outgoing energy reflected and radiated to space by earth’s surface and atmosphere. The National Aeronautics and Space Administration (NASA)/Global Energy and Water Cycle Experiment (GEWEX) Surface Radiation Budget (SRB) project produces and archives long-term datasets representative of this energy exchange system on a global scale. The data are comprised of the longwave and shortwave radiative components of the system and is algorithmically derived from satellite and atmospheric assimilation products, and acquired atmospheric data. It is stored as 3-hourly, daily, monthly/3-hourly, and monthly averages of 1°x1° …

Using The Vehicle Routing Problem To Reduce Field Completion Times With Multiple Machines, Hasan Seyyedhasani, Joseph S. Dvorak

Biosystems and Agricultural Engineering Faculty Publications

The Vehicle Routing Problem (VRP) is a powerful tool used to express many logistics problems, yet unlike other vehicle routing challenges, agricultural field work consists of machine paths that completely cover a field. In this work, the allocation and ordering of field paths among a number of available machines has been transformed into a VRP that enables optimization of completion time for the entire field. A basic heuristic algorithm (a modified form of the common Clarke-Wright algorithm) and a meta-heuristic algorithm, Tabu Search, were employed for optimization. Both techniques were evaluated through computer simulations in two fields: a hypothetical basic …

Simulation Of Anisoplanatic Imaging Through Optical Turbulence Using Numerical Wave Propagation With New Validation Analysis, Russell C. Hardie, Jonathan D. Power, Daniel A. Lemaster, Douglas R. Droege, Szymon Gladysz, Santasri Bose-Pillai

Electrical and Computer Engineering Faculty Publications

We present a numerical wave propagation method for simulating imaging of an extended scene under anisoplanatic conditions. While isoplanatic simulation is relatively common, few tools are specifically designed for simulating the imaging of extended scenes under anisoplanatic conditions. We provide a complete description of the proposed simulation tool, including the wave propagation method used. Our approach computes an array of point spread functions (PSFs) for a two-dimensional grid on the object plane. The PSFs are then used in a spatially varying weighted sum operation, with an ideal image, to produce a simulated image with realistic optical turbulence degradation. The degradation …

An Adaptive Agent-Based Approach To Traffic Simulation, Johan Barthelemy, Timoteo Carletti

SMART Infrastructure Facility - Papers

The aim of this work is to present the initial exploration of a behavioural Dynamic Traffic Assignment model, particularly suitable to be used and implemented in agent-based micro-simulations. The proposal relies on the assumption that travellers take routing policies rather than paths, leading us to introduce the possibility for each simulated agent to apply, in real time, a strategy allowing him to possibly re-route his path depending on the perceived local traffic conditions, jam and/or time spent. The re-routing process allows the agents to directly react to any change in the road network. For the sake of simplicity, the agents' …

Railnet: A Simulation Model For Operational Planning Of Rail Freight, Guillaume Michal, Nam N. Huynh, Nagesh Shukla, Albert Munoz, Johan Barthelemy

SMART Infrastructure Facility - Papers

In many rail networks, infrastructure constraints force the shared usage of lines between passenger and freight movements. Scheduling additional freight movements around existing passenger services and peak traffic based curfews presents significant challenges to commodity industries eager to increase export volumes. This paper addresses the problem of inserting additional freight movements in a constrained railway network. To this end, a railway operations planning model was developed to simulate and insert feasible rail movements in a non-periodic timetable. The simulation modelling platform developed in this paper is called RailNet, which simulates the existing railway network constraints and is capable of adding …

Autonomous Driving With A Simulation Trained Convolutional Neural Network, Cameron Franke

University of the Pacific Theses and Dissertations

Autonomous vehicles will help society if they can easily support a broad range of driving environments, conditions, and vehicles.

Achieving this requires reducing the complexity of the algorithmic system, easing the collection of training data, and verifying operation using real-world experiments. Our work addresses these issues by utilizing a reflexive neural network that translates images into steering and throttle commands. This network is trained using simulation data from Grand Theft Auto V~\cite{gtav}, which we augment to reduce the number of simulation hours driven. We then validate our work using a RC car system through numerous tests. Our system successfully drive …

Horizontal Directional Drilling Pilot Bore Simulation, Paulius Tervydis, Ruta Jankuniene

Turkish Journal of Electrical Engineering and Computer Sciences

Various underground communications (water or gas supply systems, sewage, power lines) have been installed in recent years using trenchless technologies, i.e. horizontal directional drilling (HDD). This technique by its nature does not disturb the traffic and is environmentally friendly. One must be aware that, with HDD, pipeline building time is shortened. With respect to the above, HDD is especially effective in highly populated or industrial areas. However, it is necessary to ensure that HDD works, in order to prevent damage to installed underground facilities. The aim of this work is to propose a user-friendly and inexpensive simulation tool with required …