Engineering Commons^™

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Biological Systems Engineering: Papers and Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the United States Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, …

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Biological Systems Engineering: Papers and Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the U.S. Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, litter, …

High-Throughput Phenotyping Of Plant Leaf Morphological, Physiological, And Biochemical Traits On Multiple Scales Using Optical Sensing, Huichun Zhang, Lu Wang, Xiuliang Jin, Liming Bian, Yufeng Ge

Biological Systems Engineering: Papers and Publications

Acquisition of plant phenotypic information facilitates plant breeding, sheds light on gene action, and can be applied to optimize the quality of agricultural and forestry products. Because leaves often show the fastest responses to external environmental stimuli, leaf phenotypic traits are indicators of plant growth, health, and stress levels. Combination of new imaging sensors, image processing, and data analytics permits measurement over the full life span of plants at high temporal resolution and at several organizational levels from organs to individual plants to field populations of plants. We review the optical sensors and associated data analytics used for measuring morphological, …

Advanced Air Quality Management With Machine Learning, Cheng-Pin Kuo

Doctoral Dissertations

Air pollution has been a significant health risk factor at a regional and global scale. Although the present method can provide assessment indices like exposure risks or air pollutant concentrations for air quality management, the modeling estimations still remain non-negligible bias which could deviate from reality and limit the effectiveness of emission control strategies to reduce air pollution and derive health benefits. The current development in air quality management is still impeded by two major obstacles: (1) biased air quality concentrations from air quality models and (2) inaccurate exposure risk estimations

Inspired by more available and overwhelming data, machine learning …

Predicting Water Quality Vulnerability Under Climate Change With Machine Learning, Khanh Thi Nhu Nguyen

Doctoral Dissertations

Water quality deterioration is a global and pervasive issue due to pollution caused by industrialization, urbanization, agriculturalization, and human population growth in the modern era. This issue is even more challenging in the context of climate change due to warming temperatures and the intensification of precipitation. Therefore, assessing the potential impacts of climate change on water quality is a concern. Assessment is necessary so that planners can prepare for and reduce the negative impacts on water quality. At present, climate change impact assessment frameworks are relatively adolescent. Most studies rely on climate projections from General Circulation Models for simulations of …

Ag-Iot For Crop And Environment Monitoring: Past, Present, And Future, Nipuna Chamara, Md Didarul Islam, Geng Bai, Yeyin Shi, Yufeng Ge

Biological Systems Engineering: Papers and Publications

CONTEXT: Automated monitoring of the soil-plant-atmospheric continuum at a high spatiotemporal resolution is a key to transform the labor-intensive, experience-based decision making to an automatic, data-driven approach in agricultural production. Growers could make better management decisions by leveraging the real-time field data while researchers could utilize these data to answer key scientific questions. Traditionally, data collection in agricultural fields, which largely relies on human labor, can only generate limited numbers of data points with low resolution and accuracy. During the last two decades, crop monitoring has drastically evolved with the advancement of modern sensing technologies. Most importantly, the introduction …

Learning From Machines: Insights In Forest Transpiration Using Machine Learning Methods, Morgan Tholl

Dissertations and Theses

Machine learning has been used as a tool to model transpiration for individual sites, but few models are capable of generalizing to new locations without calibration to site data. Using the global SAPFLUXNET database, 95 tree sap flow data sites were grouped using three clustering strategies: by biome, by tree functional type, and through use of a k-means unsupervised clustering algorithm. Two supervised machine learning algorithms, a random forest algorithm and a neural network algorithm, were used to build machine learning models that predicted transpiration for each cluster. The performance and feature importance in each model were analyzed and compared …

Wastewater Aeration Process Dynamic Modelling: Combined Mechanistic And Machine Learning Approach, Yuehe Pan

Electronic Thesis and Dissertation Repository

The aeration process is the largest energy consumer in wastewater treatment plants (WWTPs), and the optimization of the process based on computational models can offer significant savings for the plant. Recent theoretical developments have revealed that many of the parameters commonly assumed as constants in aeration modelling, in fact, have a dynamic nature; however, there still lacks a universal way to model these factors in an easy, accurate and timely manner. This work proposed a machine learning-based modelling approach to offer real-time estimations of the oxygen transfer rate, airflow demand, and energy consumption.

Utilizing the field data collected from Adelaide …

Supervised Machine Learning Techniques Applied To Low-Cost Air Quality Sensor Suites, Peter Wahman

All Undergraduate Theses and Capstone Projects

Low-cost PM sensors have garnered interest for their ability to reduce the cost of investigating PM concentrations in both indoor and outdoor spaces. They perform well in high concentration lab testing with correlation coefficients greater than 0.9. In real-world applications, the correlation coefficients drop significantly because of sensing floors and adverse ambient conditions. There are plenty of supervised machine learning techniques that aim to correct the measurements ranging from linear regression to more advanced neural networks and random forests. This work aims to use those more complicated techniques to adjust the measurements using other data sets gathered by a sensor …

Assessing Machine Learning Utility In Predicting Hydrologic And Nitrate Dynamics In Karst Agroecosystems, Timothy Mcgill

Theses and Dissertations--Biosystems and Agricultural Engineering

Seasonal hypoxia in the Gulf of Mexico and harmful algal blooms experienced in many inland freshwater bodies is partially driven due to excessive nitrogen loading seen from agricultural watersheds. Within the Mississippi/Atchafalaya River Basin, many areas are underlain with karst features, and efforts to reduce nitrogen contributions from these areas have had varying success, due to lacking a complete understanding of nutrient dynamics in karst agricultural systems. To improve the understanding of nitrogen cycling in these systems, 35 months of high resolution in situ water quality and atmospheric data were collected and fed into a two-hidden layer extreme learning machine …

Uavs For Vegetation Monitoring: Overview And Recent Scientific Contributions, Ana I. De Castro, Yeyin Shi, Joe Mari Maja, Jose M. Peña

Biological Systems Engineering: Papers and Publications

This paper reviewed a set of twenty-one original and innovative papers included in a special issue on UAVs for vegetation monitoring, which proposed new methods and techniques applied to diverse agricultural and forestry scenarios. Three general categories were considered: (1) sensors and vegetation indices used, (2) technological goals pursued, and (3) agroforestry applications. Some investigations focused on issues related to UAV flight operations, spatial resolution requirements, and computation and data analytics, while others studied the ability of UAVs for characterizing relevant vegetation features (mainly canopy cover and crop height) or for detecting different plant/crop stressors, such as nutrient content/deficiencies, water …

Editorial: Predictive Modeling Of Human Microbiota And Their Role In Health And Disease, Hyun-Seob Song, Stephen R. Lindemann, Dong-Yup Lee

Biological Systems Engineering: Papers and Publications

No abstract provided.

Predicting Escherichia Coli Loads In Cascading Dams With Machine Learning: An Integration Of Hydrometeorology, Animal Density And Grazing Pattern, Olufemi P. Abimbola, Aaron R. Mittelstet, Tiffany Messer, Elaine D. Berry, Shannon L. Bartelt-Hunt, Samuel Hansen

Biological Systems Engineering: Papers and Publications

Accurate prediction of Escherichia coli contamination in surface waters is challenging due to considerable uncertainty in the physical, chemical and biological variables that control E. coli occurrence and sources in surface waters. This study proposes a novel approach by integrating hydro-climatic variables as well as animal density and grazing pattern in the feature selection modeling phase to increase E. coli prediction accuracy for two cascading dams at the USMeat Animal Research Center (USMARC), Nebraska. Predictive models were developed using regression techniques and an artificial neural network (ANN). Two adaptive neuro-fuzzy inference system (ANFIS) structures including subtractive clustering and fuzzy c-means …

Predicting Escherichia Coli Loads In Cascading Dams With Machine Learning: An Integration Of Hydrometeorology, Animal Density And Grazing Pattern, Olufemi P. Abimbola, Aaron R. Mittelstet, Tiffany Messer, Elaine D. Berry, Shannon L. Bartelt-Hunt, Samuel Hansen

Biological Systems Engineering: Papers and Publications

Accurate prediction of Escherichia coli contamination in surface waters is challenging due to considerable uncertainty in the physical, chemical and biological variables that control E. coli occurrence and sources in surface waters. This study proposes a novel approach by integrating hydro-climatic variables as well as animal density and grazing pattern in the feature selection modeling phase to increase E. coli prediction accuracy for two cascading dams at the US Meat Animal Research Center (USMARC), Nebraska. Predictive models were developed using regression techniques and an artificial neural network (ANN). Two adaptive neuro-fuzzy inference system (ANFIS) structures including subtractive clustering and fuzzy …

Vegetation Detection Using Deep Learning And Conventional Methods, Bulent Ayhan, Chiman Kwan, Bence Budavari, Liyun Kwan, Yan Lu, Daniel Perez, Jiang Li, Dimitrios Skarlatos, Marinos Vlachos

Electrical & Computer Engineering Faculty Publications

Land cover classification with the focus on chlorophyll-rich vegetation detection plays an important role in urban growth monitoring and planning, autonomous navigation, drone mapping, biodiversity conservation, etc. Conventional approaches usually apply the normalized difference vegetation index (NDVI) for vegetation detection. In this paper, we investigate the performance of deep learning and conventional methods for vegetation detection. Two deep learning methods, DeepLabV3+ and our customized convolutional neural network (CNN) were evaluated with respect to their detection performance when training and testing datasets originated from different geographical sites with different image resolutions. A novel object-based vegetation detection approach, which utilizes NDVI, computer …

High‑Throughput Analysis Of Leaf Physiological And Chemical Traits With Vis–Nir–Swir Spectroscopy: A Case Study With A Maize Diversity Panel, Yufeng Ge, Abbas Atefi, Huichun Zhang, Chenyong Miao, Raghuprakash Kastoori Ramamurthy, Brandi Sigmon, Jinliang Yang, James C. Schnable

Biological Systems Engineering: Papers and Publications

Hyperspectral reflectance data in the visible, near infrared and shortwave infrared range (VIS–NIR– SWIR, 400–2500 nm) are commonly used to nondestructively measure plant leaf properties. We investigated the usefulness of VIS–NIR–SWIR as a high-throughput tool to measure six leaf properties of maize plants including chlorophyll content (CHL), leaf water content (LWC), specific leaf area (SLA), nitrogen (N), phosphorus (P), and potassium (K). This assessment was performed using the lines of the maize diversity panel. Data were collected from plants grown in greenhouse condition, as well as in the field under two nitrogen application regimes. Leaf-level hyperspectral data were collected with …

Recent Advances In Low-Cost Particulate Matter Sensor: Calibration And Application, Jiayu Li

McKelvey School of Engineering Theses & Dissertations

Particulate matter (PM) has been monitored routinely due to its negative effects on human health and atmospheric visibility. Standard gravimetric measurements and current commercial instruments for field measurements are still expensive and laborious. The high cost of conventional instruments typically limits the number of monitoring sites, which in turn undermines the accuracy of real-time mapping of sources and hotspots of air pollutants with insufficient spatial resolution. The new trends of PM concentration measurement are personalized portable devices for individual customers and networking of large quantity sensors to meet the demand of Big Data. Therefore, low-cost PM sensors have been studied …

Water Quality Factor Prediction Using Supervised Machine Learning, Kathleen Joslyn

REU Final Reports

The objective of this research is to explore prediction accuracy of water quality factors, with techniques and algorithms in machine learning consisting of a variation of support vector machines - Support Vector Regression (SVR) and the gradient boosting algorithm Extreme Gradient Boosting (XGBoost). Both the XGBoost and SVR algorithms were used to predict nine different factors with success rates ranging from 79% to 99%. Parameters of these algorithms were also explored to test the prediction accuracy levels of individual water quality factors. These parameters included normalizing the data, filling missing data points, and training and testing on a large set …

Smart Classifiers And Bayesian Inference For Evaluating River Sensitivity To Natural And Human Disturbances: A Data Science Approach, Kristen Underwood

Graduate College Dissertations and Theses

Excessive rates of channel adjustment and riverine sediment export represent societal challenges; impacts include: degraded water quality and ecological integrity, erosion hazards to infrastructure, and compromised public safety. The nonlinear nature of sediment erosion and deposition within a watershed and the variable patterns in riverine sediment export over a defined timeframe of interest are governed by many interrelated factors, including geology, climate and hydrology, vegetation, and land use. Human disturbances to the landscape and river networks have further altered these patterns of water and sediment routing.

An enhanced understanding of river sediment sources and dynamics is important for stakeholders, and …

Integrated Data Fusion And Mining (Idfm) Technique For Monitoring Water Quality In Large And Small Lakes, Benjamin Vannah

Electronic Theses and Dissertations

Monitoring water quality on a near-real-time basis to address water resources management and public health concerns in coupled natural systems and the built environment is by no means an easy task. Furthermore, this emerging societal challenge will continue to grow, due to the ever-increasing anthropogenic impacts upon surface waters. For example, urban growth and agricultural operations have led to an influx of nutrients into surface waters stimulating harmful algal bloom formation, and stormwater runoff from urban areas contributes to the accumulation of total organic carbon (TOC) in surface waters. TOC in surface waters is a known precursor of disinfection byproducts …