Engineering Commons^™

Utilizing Deep Learning Methods In The Identification And Synthesis Of Gene Regulations, Jiandong Wang

Theses and Dissertations

Gene expression is the fundamental differentiation and development process of life. Although all cells in an organism have essentially the same DNA, cell types and activities vary due to changes in gene expression. Gene expression can be influenced by many gene regulations. RNA editing contributes to the variety of RNA and proteins by allowing single nucleotide substitution. Reverse transcription can alter the expression status of genes by inducing genetic diversity and polymorphism via novel insertions, deletions, and recombination events. Gene regulation is critical to normal development because it enables cells to respond rapidly to environmental changes. However, identifying gene regulations …

Use Of Machine Learning And Natural Language Processing To Enhance Traffic Safety Analysis, Md Abu Sayed

Theses and Dissertations

Despite significant advances in vehicle technologies, safety data collection and analysis, and engineering advancements, tens of thousands of Americans die every year in motor vehicle crashes. Alarmingly, the trend of fatal and serious injury crashes appears to be heading in the wrong direction. In 2021, the actual rate of fatalities exceeded the predicted rate. This worrisome trend prompts and necessitates the development of advanced and holistic approaches to determining the causes of a crash (particularly fatal and major injuries). These approaches range from analyzing problems from multiple perspectives, utilizing available data sources, and employing the most suitable tools and technologies …

Image Restoration Under Adverse Illumination For Various Applications, Lan Fu

Theses and Dissertations

Many images are captured in sub-optimal environment, resulting in various kinds of degradations, such as noise, blur, and shadow. Adverse illumination is one of the most important factors resulting in image degradation with color and illumination distortion or even unidentified image content. Degradation caused by the adverse illumination makes the images suffer from worse visual quality, which might also lead to negative effects on high-level perception tasks, e.g., object detection.

Image restoration under adverse illumination is an effective way to remove such kind of degradations to obtain visual pleasing images. Existing state-of-the-art deep neural networks (DNNs) based image restoration …

Identifying And Discovering Curve Pattern Designs From Fragments Of Pottery, Jun Zhou

Theses and Dissertations

The surface of many cultural heritage objects, such as pottery sherds found in the Southeastern Woodlands, were embellished with curve patterns. The original full designs of these patterns reflect rich historical and cultural information. However, in practice, most objects are fragmentary, making the complete underlying designs unknowable at the scale of the sherd fragment. The challenge to reconstruct and study complete designs is stymied because 1) most pottery sherds contain only a small portion of the underlying full design, 2) curve patterns detected on a sherd are usually incomplete and noisy, and 3) in the case of a stamping application, …

Wound Image Classification Using Deep Convolutional Neural Networks, Behrouz Rostami

Theses and Dissertations

Artificial Intelligence (AI) includes subfields like Machine Learning (ML) and DeepLearning (DL) and discusses intelligent systems that mimic human behaviors. ML has been used in a wide range of fields. Particularly in the healthcare domain, medical images often need to be carefully processed via such operations as classification and segmentation. Unlike traditional ML methods, DL algorithms are based on deep neural networks that are trained on a large amount of labeled data to extract features without human intervention. DL algorithms have become popular and powerful in classifying and segmenting medical images in recent years. In this thesis, we shall study …

Deep Learning-Based, Passive Fault Tolerant Control Facilitated By A Taxonomy Of Cyber-Attack Effects, Dean C. Wardell

Theses and Dissertations

In the interest of improving the resilience of cyber-physical control systems to better operate in the presence of various cyber-attacks and/or faults, this dissertation presents a novel controller design based on deep-learning networks. This research lays out a controller design that does not rely on fault or cyber-attack detection. Being passive, the controller’s routine operating process is to take in data from the various components of the physical system, holistically assess the state of the physical system using deep-learning networks and decide the subsequent round of commands from the controller. This use of deep-learning methods in passive fault tolerant control …

Joint 1d And 2d Neural Networks For Automatic Modulation Recognition, Luis M. Rosario Morel

Theses and Dissertations

The digital communication and radar community has recently manifested more interest in using data-driven approaches for tasks such as modulation recognition, channel estimation and distortion correction. In this research we seek to apply an object detector for parameter estimation to perform waveform separation in the time and frequency domain prior to classification. This enables the full automation of detecting and classifying simultaneously occurring waveforms. We leverage a lD ResNet implemented by O'Shea et al. in [1] and the YOLO v3 object detector designed by Redmon et al. in [2]. We conducted an in depth study of the performance of these …

Object Detection With Deep Learning To Accelerate Pose Estimation For Automated Aerial Refueling, Andrew T. Lee

Theses and Dissertations

Remotely piloted aircraft (RPAs) cannot currently refuel during flight because the latency between the pilot and the aircraft is too great to safely perform aerial refueling maneuvers. However, an AAR system removes this limitation by allowing the tanker to directly control the RP A. The tanker quickly finding the relative position and orientation (pose) of the approaching aircraft is the first step to create an AAR system. Previous work at AFIT demonstrates that stereo camera systems provide robust pose estimation capability. This thesis first extends that work by examining the effects of the cameras' resolution on the quality of pose …

Scatter Reduction By Exploiting Behaviour Of Convolutional Neural Networks In Frequency Domain, Carlos Ivan Jerez Gonzalez

Theses and Dissertations

In X-ray imaging, scattered radiation can produce a number of artifacts that greatly

undermine the image quality. There are hardware solutions, such as anti-scatter grids.

However, they are costly. A software-based solution is a better option because it is

cheaper and can achieve a higher scatter reduction. Most of the current software-based

approaches are model-based. The main issues with them are the lack of flexibility, expressivity, and the requirement of a model. In consideration of this, we decided to apply

Convolutional Neural Networks (CNNs), since they do not have any of the previously

mentioned issues.

In our approach we split …

Model Augmented Deep Neural Networks For Medical Image Reconstruction Problems, Hongquan Zuo

Theses and Dissertations

Solving an ill-posed inverse problem is difficult because it doesn't have a unique solution. In practice, for some important inverse problems, the conventional methods, e.g. ordinary least squares and iterative methods, cannot provide a good estimate. For example, for single image super-resolution and CT reconstruction, the results of these conventional methods cannot satisfy the requirements of these applications. While having more computational resources and high-quality data, researchers try to use machine-learning-based methods, especially deep learning to solve these ill-posed problems. In this dissertation, a model augmented recursive neural network is proposed as a general inverse problem method to solve these …

Machine Intelligence For Advanced Medical Data Analysis: Manifold Learning Approach, Fereshteh S Bashiri

Theses and Dissertations

In the current work, linear and non-linear manifold learning techniques, specifically Principle Component Analysis (PCA) and Laplacian Eigenmaps, are studied in detail. Their applications in medical image and shape analysis are investigated.

In the first contribution, a manifold learning-based multi-modal image registration technique is developed, which results in a unified intensity system through intensity transformation between the reference and sensed images. The transformation eliminates intensity variations in multi-modal medical scans and hence facilitates employing well-studied mono-modal registration techniques. The method can be used for registering multi-modal images with full and partial data.

Next, a manifold learning-based scale invariant global shape …

A Microscopic Simulation Laboratory For Evaluation Of Off-Street Parking Systems, Yun Yuan

Theses and Dissertations

The parking industry produces an enormous amount of data every day that, properly analyzed, will change the way the industry operates. The collected data form patterns that, in most cases, would allow parking operators and property owners to better understand how to maximize revenue and decrease operating expenses and support the decisions such as how to set specific parking policies (e.g. electrical charging only parking space) to achieve the sustainable and eco-friendly parking.

However, there lacks an intelligent tool to assess the layout design and operational performance of parking lots to reduce the externalities and increase the revenue. To address …

Design And Implementation Of A Domain Specific Language For Deep Learning, Xiao Bing Huang

Theses and Dissertations

\textit {Deep Learning} (DL) has found great success in well-diversified areas such as machine vision, speech recognition, big data analysis, and multimedia understanding recently. However, the existing state-of-the-art DL frameworks, e.g. Caffe2, Theano, TensorFlow, MxNet, Torch7, and CNTK, are programming libraries with fixed user interfaces, internal representations, and execution environments. Modifying the code of DL layers or data structure is very challenging without in-depth understanding of the underlying implementation. The optimization of the code and execution in these tools is often limited and relies on the specific DL computation graph manipulation and scheduling that lack systematic and universal strategies. Furthermore, …