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Full-Text Articles in Engineering
Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi
Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi
John David N. Dionisio
GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …
Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi
Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi
Biology Faculty Works
GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …
Visualization Of Deep Convolutional Neural Networks, Dingwen Li
Visualization Of Deep Convolutional Neural Networks, Dingwen Li
McKelvey School of Engineering Theses & Dissertations
Deep learning has achieved great accuracy in large scale image classification and scene recognition tasks, especially after the Convolutional Neural Network (CNN) model was introduced. Although a CNN often demonstrates very good classification results, it is usually unclear how or why a classification result is achieved. The objective of this thesis is to explore several existing visualization approaches which offer intuitive visual results. The thesis focuses on three visualization approaches: (1) image masking which highlights the region of image with high influence on the classification, (2) Taylor decomposition back-propagation which generates a per pixel heat map that describes each pixel's …
Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow
Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow
Computer Science and Engineering Faculty Publications
Biologists doing high-throughput high-content cellular analysis are generally not computer scientists or high performance computing (HPC) experts, and they want their workflow to support their science without having to be. We describe a new HPC enabled data analytics workflow with a web interface, HPC pipeline for analysis, and both traditional and new analytics tools to help them transition from a single workstation mode of operation to power HPC users. This allows the processing of multiple plates over a short period of time to ensure timely query and analysis to match potential countermeasures to individual responses.
Making Sense Of Email Addresses On Drives, Neil C. Rowe, Riqui Schwamm, Michael R. Mccarrin, Ralucca Gera
Making Sense Of Email Addresses On Drives, Neil C. Rowe, Riqui Schwamm, Michael R. Mccarrin, Ralucca Gera
Journal of Digital Forensics, Security and Law
Drives found during investigations often have useful information in the form of email addresses which can be acquired by search in the raw drive data independent of the file system. Using this data we can build a picture of the social networks that a drive owner participated in, even perhaps better than investigating their online profiles maintained by social-networking services because drives contain much data that users have not approved for public display. However, many addresses found on drives are not forensically interesting, such as sales and support links. We developed a program to filter these out using a Naïve …
Computer Graphics And Visualization Based Analysis And Record System For Hand Surgery And Therapy Practice, Venkatamanikanta Subrahmanyakartheek Gokavarapu
Computer Graphics And Visualization Based Analysis And Record System For Hand Surgery And Therapy Practice, Venkatamanikanta Subrahmanyakartheek Gokavarapu
Browse all Theses and Dissertations
In this thesis, we have designed and developed a computer graphics and visualization based analysis and record system for hand surgery and therapy practice. In particular, we have designed and developed three novel technologies: (i) model-based data compression for hand motion records (ii) model-based surface area estimation of a human hand and (iii) an emulated study of hand wound area estimation. First, we have presented a new data compression technique to better address the needs of electronic health record systems, such as file storage and privacy. In our proposed approach, we will extract the patient's hand motion information and store …
Miniatured Inertial Motion And Position Tracking And Visualization Systems Using Android Wear Platform, Dhruvkumar Navinchandra Patel
Miniatured Inertial Motion And Position Tracking And Visualization Systems Using Android Wear Platform, Dhruvkumar Navinchandra Patel
Browse all Theses and Dissertations
In this thesis, we have designed and developed a motion tracking and visualization system using the latest motion tracking sensory technologies. It is one of the enabling technologies for our novel visual-inertial odometer and human anatomy based 3D Locating, Mapping and Navigation system for endoscopy and drug delivery capsules used inside GI tract. In particular, we have: i) designed and completed a cloud-based sensory data collecting, processing and storage system to provide the reliable computing and storage platform; ii) explored different data processing methods to obtain improved-quality motion results from extremely noisy raw data, e.g., by using a low pass …