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Full-Text Articles in Engineering

Multipath And Rate Stability, Junjie Liu, Roch A. Guérin Dec 2016

Multipath And Rate Stability, Junjie Liu, Roch A. Guérin

All Computer Science and Engineering Research

Originally Published In Proc. IEEE Globecom Conference - CQRM: Communication QoS, Reliability & Modeling Symposium


Indoor Scene Localization To Fight Sex Trafficking In Hotels, Abigail Stylianou Dec 2016

Indoor Scene Localization To Fight Sex Trafficking In Hotels, Abigail Stylianou

McKelvey School of Engineering Theses & Dissertations

Images are key to fighting sex trafficking. They are: (a) used to advertise for sex services,(b) shared among criminal networks, and (c) connect a person in an image to the place where the image was taken. This work explores the ability to link images to indoor places in order to support the investigation and prosecution of sex trafficking. We propose and develop a framework that includes a database of open-source information available on the Internet, a crowd-sourcing approach to gathering additional images, and explore a variety of matching approaches based both on hand-tuned features such as SIFT and learned features …


Bayesian Networks To Assess The Newborn Stool Microbiome, William E. Bennett Jr. Aug 2016

Bayesian Networks To Assess The Newborn Stool Microbiome, William E. Bennett Jr.

McKelvey School of Engineering Theses & Dissertations

In human stool, a large population of bacterial genes and transcripts from hundreds of genera coexist with host genes and transcripts. Assessments of the metagenome and transcriptome are particularly challenging, since there is a great deal of sequence overlap among related species and related genes. We sequenced the total RNA content from stool samples in a neonate using previously-described methods. We then performed stepwise alignment of different populations of RNA sequence reads to different indices, including ribosomal databases, the human genome, and all sequenced bacterial genomes. Each pool of RNA at each alignment step was subjected to compression to assess …


In-Network Retransmissions In Named Data Networking, Hila Ben Abraham, Patrick Crowley Jul 2016

In-Network Retransmissions In Named Data Networking, Hila Ben Abraham, Patrick Crowley

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The strategy layer is an important architectural component in both Content-Centric Networking (CCN) and Named Data Networking (NDN). This component introduces a new forwarding model that allows an application to configure its namespace with a forwarding strategy. A core mechanism in every forwarding strategy is the decision of whether to retransmit an unsatisfied Interest or to wait for an application retransmission. While some applications request control of all retransmissions, others rely on the assumption that the strategy will retransmit an Interest when it is not satisfied. Although an application can select the forwarding strategy used in the local host, it …


Mercator (Mapping Enumerator For Cuda) User's Manual, Stephen V. Cole, Jeremy Buhler Jul 2016

Mercator (Mapping Enumerator For Cuda) User's Manual, Stephen V. Cole, Jeremy Buhler

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Welcome to the MERCATOR user's manual! MERCATOR is a CUDA/C++ system designed to assist you in writing efficient CUDA applications by automatically generating significant portions of the GPU-side application code. We hope you find it helpful; please feel free to contact the authors with any questions or feedback.


Revelation Of Yin-Yang Balance In Microbial Cell Factories By Data Mining, Flux Modeling, And Metabolic Engineering, Gang Wu May 2016

Revelation Of Yin-Yang Balance In Microbial Cell Factories By Data Mining, Flux Modeling, And Metabolic Engineering, Gang Wu

McKelvey School of Engineering Theses & Dissertations

The long-held assumption of never-ending rapid growth in biotechnology and especially in synthetic biology has been recently questioned, due to lack of substantial return of investment. One of the main reasons for failures in synthetic biology and metabolic engineering is the metabolic burdens that result in resource losses. Metabolic burden is defined as the portion of a host cells resources either energy molecules (e.g., NADH, NADPH and ATP) or carbon building blocks (e.g., amino acids) that is used to maintain the engineered components (e.g., pathways). As a result, the effectiveness of synthetic biology tools heavily dependents on cell capability to …


Visualization Of Deep Convolutional Neural Networks, Dingwen Li May 2016

Visualization Of Deep Convolutional Neural Networks, Dingwen Li

McKelvey School of Engineering Theses & Dissertations

Deep learning has achieved great accuracy in large scale image classification and scene recognition tasks, especially after the Convolutional Neural Network (CNN) model was introduced. Although a CNN often demonstrates very good classification results, it is usually unclear how or why a classification result is achieved. The objective of this thesis is to explore several existing visualization approaches which offer intuitive visual results. The thesis focuses on three visualization approaches: (1) image masking which highlights the region of image with high influence on the classification, (2) Taylor decomposition back-propagation which generates a per pixel heat map that describes each pixel's …


Grafalgo - A Library Of Graph Algorithms And Supporting Data Structures (Revised), Jonathan Turner Jan 2016

Grafalgo - A Library Of Graph Algorithms And Supporting Data Structures (Revised), Jonathan Turner

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This report provides an (updated) overview of Grafalgo, an open-source library of graph algorithms and the data structures used to implement them. The programs in this library were originally written to support a graduate class in advanced data structures and algorithms at Washington University. Because the code's primary purpose was pedagogical, it was written to be as straightforward as possible, while still being highly efficient. Grafalgo is implemented in C++ and incorporates some features of C++11. The library is available on an open-source basis and may be downloaded from https://code.google.com/p/grafalgo/. Source code documentation is at www.arl.wustl.edu/~jst/doc/grafalgo.


Locality-Aware Dynamic Task Graph Scheduling, Jordyn Maglalang, Sriram Krishnamoorthy, Kunal Agrawal Jan 2016

Locality-Aware Dynamic Task Graph Scheduling, Jordyn Maglalang, Sriram Krishnamoorthy, Kunal Agrawal

All Computer Science and Engineering Research

Dynamic task graph schedulers automatically balance work across processor cores by scheduling tasks among available threads while preserving dependences. In this paper, we design NabbitC, a provably efficient dynamic task graph scheduler that accounts for data locality on NUMA systems. NabbitC allows users to assign a color to each task representing the location (e.g., a processor core) that has the most efficient access to data needed during that node’s execution. NabbitC then automatically adjusts the scheduling so as to preferentially execute each node at the location that matches its color—leading to better locality because the node is likely to make …