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Automating Deployment Of Several Gbrowse Instances, Neil Moore, Jerzy W. Jaromczyk, Christopher L. Schardl, Joedocei Hill, Devin Wright
Automating Deployment Of Several Gbrowse Instances, Neil Moore, Jerzy W. Jaromczyk, Christopher L. Schardl, Joedocei Hill, Devin Wright
Computer Science Presentations
Background
As part of the fungal endophyte genomes project, we maintain genome browsers for several dozen strains of fungi from the Clavicipitaceae and related families. These genome browsers are based on the GBrowse software, with a large collection of in-house software for visualization, analysis, and searching of genome features.
Although GBrowse supports serving multiple data sources, such as distinct genome assemblies, from a single GBrowse instance, there are advantages to maintaining separate instances for each genome. Besides permitting per-genome customizations of the software, page layout, and database schemas, our use of separate instances also allows us to maintain different security …