Engineering Commons^™

The Interconnection Of The Vestibular And Oculomotor Systems Analyzed In Healthy Young Adults By Examining Postural Sway, Cassandra Martin

Theses

In order to study the human brain in a non-invasive way, the vestibular and oculomotor systems have been analyzed simultaneously. To achieve this, an eye movement and balance assessment was conducted for 29 (23 male; 21.6 ± 3.8 years) healthy participants with no history of concussions, brain injuries, vertigo, migraines, brain surgeries, eye surgeries, or amblyopia. The tasks consisted of eyes open, eyes closed, horizontal saccades, vertical saccades, vergence jumps, horizontal vestibulo-ocular reflex (VOR), and vertical VOR. Each task was completed in two stances: feet shoulder width apart and feet together. Distance, velocity, sway area, center of pressure (COP) frequency, …

Drug Releasing Hydrogels For Opioid Use Disorder, Kaytlyn M. Crowe

Theses

Ease of access to prescription opioids and the strength of synthetic opioids have contributed to the rise in over use disorders, overdose, and death rates during the opioid epidemic. The current overdose standard of care, rescue NLX (NLX), is a competitive antagonist to the μ-opioid receptor but has a relatively short period of action compared to opioid agonists, especially synthetic agonists. Rises in the abuse of these synthetic and semi-synthetic agents in recent years have shown the weaknesses of rescue NLX, as it can leave overdose patients vulnerable to renarcotization and precipitated withdrawal. To prevent both from occurring, we developed …

The Effects Of Design Parameters On The Neural Recordings With Micro-Ecog Arrays, Manan Amish Sethia

Theses

In the field of neural prosthetics, electro-cortico-graph (ECoG) arrays are commonly used to record neural activity of the brain cortex both in animal and human subjects. A finite element model (FEM) was developed to simulate the electric field generated by a single neuron in the rat brain cortex and a micro ECoG array (µECoG) placed on the pia surface for recording the neural signal. The neuron was simulated as a dipole current source with a magnitude of 1µA and placed at three different depths in the motor cortex corresponding to different layers under the µECoG array. The array design was …

Real Time Analysis Of Eye Movements Using Computer Aided Software, Farhan Ahmad

Theses

Eye movement analysis is a slow and tasking job that require a trained vision analyst to sift through hundreds of eye movements. The difficulty of the task increases when a subject has undiagnosed eye related disorders. One such disorder is Convergence insufficiency (CI) which affects nearly 12 million people in the US. Convergence insufficiency occurs when the eyes are unable to coordinate simultaneous inward movement for near focal tracking. Individuals with CI are unable to coordinate eye movements this can result in many symptoms such as double vision, blurred vision, headaches, vision strain, and fatigue. A diagnosis for CI relies …

Neurovascular Catheter Measurement System Development For Process And Design Effect Evaluation, Cathal Tadhg Merz

Theses

Neurovascular guide catheters are used to treat problems affecting blood vessels within the brain through minimally invasive procedures. Catheters are inserted into the patient via their femoral or brachial arteries and manually navigated to the brain to deliver treatment. This procedure replaces the requirement to cut into the patient’s skull and brain tissue but is limited by reduction of blood vessel lumen diameter and increase in tortuosity of blood vessels deep in the brain. During these procedures, catheters can sometimes fail by kinking or fracturing into two pieces. The rate of failure by fracture of a particular neurovascular catheter device …

Cycloidal-Drive Joint Design For Wearable Exoskeletons, Abhi J. Rawal

Theses

This thesis's scope was to construct a highly back drivable and compact joint design that can be used for wearable exoskeletons specifically designed to assist with rehabilitation. A compact cycloidal gear transmission was designed to satisfy the compactness requirement while ensuring the minimum torque is required for backdriving the mechanism. The joint was designed based on the compact cycloidal drive specifications, and the backdrivability test was performed to measure the minimum torque required (1.20 Nm) to backdrive. The joint design incorporates various important features such as rotation lock feature to prevent hyperextension, a housing design that offers the benefit of …

Comparison Of Longitudinal Changes In Resting State Functional Magnetic Resonance Imaging Between Alzheimer’S And Healthy Controls, Berk Can Yilmaz

Theses

Resting State Functional Magnetic Resonance Imaging (rs-fMRI) is a technique that is widely used for analyzing brain function using different approaches and methods. This study involves rs-fMRI analysis of Blood Oxygenation Level Dependent (BOLD) signals acquired from Alzheimer’s disease (AD) Patients and Healthy Controls (HC). Each subject in the study had both functional and anatomical images with at least one rs-fMRI scan with their Anatomical (T1) scans. Previous rs-fMRI studies have demonstrated that AD shows differences in Amplitude of Low Frequency (<0.1 Hz) Fluctuations (ALFF), and Regional Homogeneity (ReHo) measures according to HCs.

The aim of the study is to investigate individual and group level differences using ReHo and mALFF related …

A Model For Thermal Diffusion And Local Tissue Damage From The Measurement Of Temperature In Electrosurgical Incision, Marek Vira

Theses

The extremely high temperatures applied over extremely short time intervals that are characteristic of electrosurgery result in a unique tissue damage pattern. Cesarean delivery and hysterectomy, the two most frequently performed procedures in obstetrics and gynecology (OB/GYN), commonly employ electrosurgical incision. While it is controversial, it has been suggested that tissue damage produced by electrosurgery could increase surgical site infection rates. While recommendations for the settings in the use of the electrosurgical unit do exist, there is no current technique for real time assessment of the viability of tissue around the site of the electrosurgical incision. Current methods for analyzing …

Model-Based Deep Siamese Autoencoder For Clustering Single Cell Rna-Seq Data, Zixia Meng

Theses

In the biological field, the smallest unit of organisms in most biological systems is the single cell, and the classification of cells is an everlasting problem. A central task for analysis of single-cell RNA-seq data is to identify and characterize novel cell types. Currently, there are several classical methods, such as K-means algorithm, spectral clustering, and Gaussian Mixture Models (GMMs), which are widely used to cluster the cells. Furthermore, typical dimensional reduction methods such as PCA, t-SNE, and ZIDA have been introduced to overcome “the curse of dimensionality”. A more recent method scDeepCluster has demonstrated improved and promising performances in …

Micro Pipes – A Portable Integrated Platform For Electrochemical Sensing Using Essence Architecture, Hansin Kim

Theses

The field of microfluidics and lab-on-chip (LOC) technology has the potential to have a truly transformative effect in biological engineering. This includes areas such as single-cell analysis, environmental monitoring, regenerative medicine, and point-of-care diagnostics. Yet despite being the subject of intense research over the past two decades, LOC devices have not been widely adopted. It is increasingly evident that there is a need for an effective and adaptable integration strategy to realize the potential of this technology.

Presented in this thesis is a design for a chip-to-world interface that aims to improve integration while maintaining cost-efficiency and ease of fabrication. …

Lithium As A Possible Therapeutic Drug In Posttraumatic Brain Injury, Tulika Das

Theses

Lithium, a popular drug for treating mental health disorder has shown promising effect in recent research on traumatic brain injury (TBI). The mechanism of lithium for treating bipolar mood disorder is still not properly understood, but recent studies showed that lithium is neuroprotective in TBI. In my thesis, the neuroprotective effects of lithium were examined in primary neuronal culture and mild blunt injury using rodent model of Lateral Fluid Percussion Injury (LFPI). At first determination of the neuroprotective/toxicity effects of lithium in neuronal culture was done and observed that 0.5 - 1.0 mM concentrations were found to be neuroprotective as …

Vergence Eye Movement Parameters For Pre/Post-Obvat And Sham Therapy On Binocularly Normal Controls, Joel V. Rajah

Theses

Vergence is the disjunctive movement of the eyes to maintain single binocular vision. Vergence eye movements are necessary to maintain the object of interest on the fovea of each eye as an individual looks from one object to another. Recent studies show that office based vergence/accommodative therapy (OBVAT) is an effective treatment for the binocular dysfunction known as convergence insufficiency. This study was performed to investigate the changes in oculomotor parameters parameter data for pre- and post-therapy subjects who are binocularly normal controls. A haploscope was used to collect eye movement data pre- and post-therapy. The analysis of the eye …

Experimentally Linking Head Kinematics To Brain Deformation, Imouline Algharbi

Theses

Traumatic brain injury (TBI) research is used to study the effects of brain injuries and the rehabilitations for them. TBI contributes to major cause of disability and deaths quantifying up to 30% of all the head injuries. To mimic real world impact to understand the mechanism of injury head-surrogate models are used. This thesis describes a method to record head kinematics from acceleration and angular rate sensors of head-brain surrogate model for blast and blunt injury. This methodology is validated through experimental testing. To get a better insight of the head kinematics experienced by a real skull a drop tower …

Longitudinal Investigation Of Disparity Vergence In Young Adult Convergence Insufficiency Patients, Patrick C. Crincoli

Theses

Vergence is a form of eye movement in which the eyes move in opposite directions to minimize retinal disparity. It allows an object at different distances from a viewer to appear single during binocular vision by centering the image on the fovea of each retina. Convergence insufficiency (CI) is a binocular disfunction in which blurry and double vision is a symptom. Office-based Vergence/Accommodative Therapy (OBVAT) has been shown to be effective in treating CI. A randomized clinical trial was designed to study fifty participants with CI before and after therapy using randomized therapy treatment (active and placebo), standardized clinical definitions, …

Feasibility Of Integrating Microfluidics Into Point-Of-Care Bio-Diagnostics, Swetha Manoharan

Theses

Potassium in the body needs to be maintained in proper levels for the normal functioning of heart and kidneys. The aim of this work is to develop a simple technique to measure the concentration of Potassium present in a bodily fluid sample, which can be used to assess the health condition of extremely sick patients, especially when the patient's condition needs to be diagnosed and results needs to be obtained rapidly under Point-of-Care settings. Microfluidics is one of the platforms used in bio-diagnostics because of several advantages such as low sample volume requirement and integration into high-throughput screening. In this …

Head Impacts In The A7fl, Stephen Mcgeever

Theses

The American 7s Football League (A7FL) is a semi professional football league that does not use helmets or pads. The theory is that the game is safer without helmets and pads because players feel more vulnerable and use a different tackling technique to protect themselves. Rather than lowering and leading with their head when the players tackle, as many helmeted football players do, A7FL players primarily use their arms to wrap the opponent up. A7FL players were given Vector mouth guards designed by Athlete Intelligence to wear. These mouth guards have built in tri-axial accelerometers to record impact data, which …

Changes In Nadph Oxidase (Nox) Protein Isoforms And Downstream Reactions As Function Of Time And Overpressure In Blast Tbi, Smit Prakash Shah

Theses

Blast-induced Traumatic brain injury (bTBI) is a leading cause of morbidity in soldiers on the battlefield and training sites with long-term neurological and psychological pathologies. Among many pathological sequela of blast TBI, oxidative stress has been identified as a major factor contributing to the pathophysiology of bTBI. Recent studies have demonstrated activation of oxidative stress pathways following blast injury but their distribution among different brain regions as function of post injury time and Blast over pressure (BOP) have not been explored. The present study examines the protein expression of NADP oxidase (NOX) isoforms 1 & 2, corresponding superoxide production, a …

Carbon Fiber Electrodes For In Vivo Neural Recording, Esma Cetinkaya

Theses

Multi-channel micro electrodes for neural recording is a growing field that thrives on novel materials and fabrication techniques offered by micro fabrication technology. The material and the design of microelectrodes have a critical role on the quality of neural signals recorded. The neural signals collected by chronic implantation of these devices in experimental animals reveal new information about the brain functions and guide the development of new diagnostic and treatment options for neurological disorders.

Ideally, a microelectrode should meet two important criteria: longevity after implantation and minimal tissue insult. Carbon fibers` high tensile strength and flexibility allow fabrication of micro-scale …

Spatial And Temporal Deformation Pattern Of The Brain From Blunt Trauma, Abdus Ali

Theses

It is widely accepted that under extreme loadings the soft tissue of the brain will deform inside the skull, creating large amounts of both stress and strain on the tissue. This can result in a focal injury, or in the case of acceleration and deceleration, diffuse injuries. Any attempt at understanding the underlying mechanisms and effects of TBI, have to start by focusing on what is actually occurring within the brain. The objective of this experiment is to record differences in the spatial and temporal patterns of deformation within the brain during blunt trauma when changing impact parameters. A linear …

Interaction Of Voluntary Activity And Functional Electrical Stimulation In The Upper Extremity As A Method For Short-Term Alteration Of Corticospinal Excitability And Force Control, Katherine Maia Gerton

Theses

Repetitive movement training (RMT) is a well-established method for rehabilitating functional movement. However, many stroke survivors are not able to participate in RMT for the necessary duration to produce results due to rapid muscle fatigue or inability to perform the desired movement at all. Often, functional electrical stimulation (FES) is applied passively, as a rehabilitative therapy, to stroke subjects who are unable to participate in RMT. The effects of voluntary contraction and FES are not well understood for the upper extremity following a stroke. This experiment was designed to elucidate the mechanisms of functional and neurophysiological changes associated with combining …

Subject And Group Level Changes And Comparison In Functional Connectivity Under Low Vs. High Cognitively Demanding Naturalistic Viewing Conditions Using Fmri, Rakibul Hafiz

Theses

Resting State fMRI is used extensively for analysing brain regions. fMRI is also used to determine task induced activations from cerebral networks. This study involves both rest and task activation data and implements statistical methods applied on Blood Oxygenation Level Dependent (BOLD) signals. The conventional task based designs are very specific and may not reflect day to day activities. The two task conditions in this study are watching a movie called INSCAPE with low cognitive load and segments of contextual Hollywood movies under continuous and natural conditions.

The aim is to investigate individual and group level Functional Connectivity changes between …

Profiling The Neurovascular Cell Interactions In Alcohol Exposure And Hiv-1 Infection, Agnieszka Agas

Theses

Alcohol use is known to exacerbate the progression of human immunodeficiency virus associated acquired immunodeficiency syndrome or HIV/AIDS in the brain, known as the NeuroAIDS. The mechanisms of this accelerated progression are still poorly understood. The purpose of my thesis is to review the parameters contributing to the co-morbid effects of alcohol in the progression of NeuroAIDS. The first aim will evaluate the exacerbating effects of alcohol on HIV-1 transmission, infection, and the role of metabolic energy imbalance during NeuroAIDS progression, which will enable me to formulate the possible mechanism for NeuroAIDS progression. The second aim will help me establish …

Experimental Study Of Bubble Rupture During Shock-Fluid Interaction, Subhalakshmi Chandrasekaran

Theses

Head injuries are associated with exposure to high energy explosive detonation. There are four distinct types of blast induced neurotrauma (BINT): 1) these caused by supersonic shock waves propagating in the atmosphere (primary), 2) high velocity impact of shrapnel and debris (secondary) 3) acceleration and deceleration of the body and collision with the solid objects in the field (tertiary) and 4) exposure to high temperature and toxic gases (quaternary). One of the mechanisms implicated in non-impact primary blast-induced traumatic brain injury (bTBI) is cavitation. It is hypothesized that cavitation can occur in the cerebrospinal fluid (CSF) layer, brain interstitial fluid, …

Measurement Of Finger Coordination During A Motor Learning Task, Robert Ebel

Theses

The focus of this study is to observe the changes in whole hand grasp strategy, in healthy subjects, over time in a series of isometric force control learning tasks. During a series of trials with real-time visual feedback of the five finger forces, subjects adapted their grasp strategy in order to reach the target in a time efficient manner. In early trials, it is very evident that subjects focus on controlling the force output of one finger at a time until they reach the goal. As the block of trials progresses, subjects alter their strategy to a more coordinated movement …

Denoising Techniques Reveal Neural Correlates Of Modulation Masking Release In Auditory Cortex, Sahil Chaubal

Theses

Hearing aids allow hearing impaired (HI) individuals to regain auditory perception in quiet settings. However, despite advances in hearing aid technology, HI individuals do not perform as well in situations with background sound as normally hearing (NH) listeners. An extensive literature demonstrates that when comparing tone detection performance in background noise, NH listeners have better thresholds when that noise is temporally modulated as compared to temporally unmodulated. However, this perceptual benefit, called Modulation Masking Release (MMR), is much reduced in HI listeners, and this is thought to be a reason for why HI listeners struggle in the presence of background …

Development & Validation Of An Improved Biomechanical Model For Motion Analysis, Darren Dawson

Theses

Three dimensional motion analysis systems are utilised across a number of different disciplines, including clinical gait analysis, sports performance studies and analysis of tasks of daily living. These systems utilise biomechanical models which define body segment coordinate systems and calculate kinematic and kinetic relationships about the joints between adjacent coordinate systems. In this study, a biomechanical model for general use in motion analysis was developed and validated. It was designed to improve upon the accuracy and capability of currently available models. The newly developed model utilises state of the art techniques to accurately define body segment coordinate systems. Accurate predictive …

Antibacterial Efficacy Of Nanometals In Conjunction With Electrical Stimulus, Syed A. Hussain

Theses

Hospital related infections generally result from the combined effect of preexisting bacteria on the patient and invasive devices. This demonstrates the significance in improving these medical devices to increase the quality of life of the patients that require them. This study will attempt to evaluate the antibacterial efficacy of nanocopper particles and an electrical stimulus for the usage in medical device development and the hospital environment.

For devices such as catheters, infections typically result from bacteria entering the body from the outside. This is accomplished by bacteria attaching themselves to the exterior of the device and producing biofilm which allows …

Response Of Stretch-Injured Schwann Cells, Stephanie Iring

Theses

Axon fibers are covered by myelin sheath. After axonal damage, demyelination follows with the production of debris. In the Central Nervous System many studies have been performed to observe and analyze stretch injured axons, but very little has been done to study the white matter axonal tracts, oligodendrocytes. Schwann cells can help take a first look into stretch injured glia cells from the Peripheral nervous system. In order to observe changes in Schwann Cells a stretch injury device is used to produce the effects of severe and moderate injuries. Schwann Cells are stretch injured in both their undifferentiated and differentiated …

Effect Of Melt Method On Thoracolumbar Connective Tissue, Faria Sanjana

Theses

Approximately, 31 million adults in the United States suffer from low back pain (LBP). Altered connective tissue structure has been identified in adults with chronic LBP. Numerous novel treatments are being developed targeting the connective tissue and nervous system to relieve people from LBP. One such self-care treatment is the MELT method. The objective of this study was to determine whether thickness of thoracolumbar connective tissue and other biomechanical and viscoelastic properties of myofascial tissue in the low back region change in subjects with chronic LBP as a result of MELT.

Using ultrasound imaging and an algorithm developed in MATLAB, …

Continuum Mechanical Analysis Of Space And Time Dependent Deformation Pattern Of Brain With Blunt Injury, Chen Miao

Theses

Deformation of human brain due to acceleration impact has been widely accepted as the direct connection to the Trauma Brain Injury (TBI). However, the limitation of obtaining deformation data of TBI is a major obstacle to understanding TBI mechanism. This experiment mainly focuses on developing a method to measure deformation pattern of brain with blunt injury. First of all, displacement data of markers on sagittal plane of an injury head model was collected using 3D reconstruction software after an impact test. Second, the displacement data was used to calculate 2D Lagrangian strain tensor and the principal strain. The temporal and …