Engineering Commons^™

Engineered Microalgae Cultivations Systems: Conversion Of Wastewater Nutrients Into Biofuels And Bioplastics, Jacob Watkins

All Graduate Theses and Dissertations, Fall 2023 to Present

Dissolved Nitrogen and Phosphorus in wastewater can contribute to harmful algae blooms if released into the environment. One technology that can be used to recover dissolved nutrients from wastewater is the Rotating Algae Biofilm Reactor (RABR), which supports microalgae growth in an easily-harvested biofilm and produces nitrogenand phosphorus-rich biomass that can be used to produce slow-release fertilizers, biofuels, and compostable bioplastics. This thesis (1) examines the effects of several environmental factors on the biomass production rate and nutrient removal efficiency of RABRs treating municipal wastewater, (2) quantifies the composition and biofuel yields of microalgae biomass cultivated using a RABR at …

Analysis Of An Outdoor Pilot-Scale Rotating Algae Biofilm Reactor For Power Optimization, Ash-Enhanced Productivity, And Nutrient Uptake, Peter F. Jeppesen

All Graduate Theses and Dissertations, Fall 2023 to Present

Outdoor testing of a rotating algae biofilm reactor (RABR) was performed to see how well it could remove nutrients from water and produce algae. By adjusting the operation settings, we found the lowest power needed to remove nitrogen and phosphorus. The lowest power values needed were 1.36 kWh per kilogram of nitrogen and 20.1 kWh per kilogram of phosphorus. The algae production rate reached a maximum of 7.09 grams per square meter per day. Detailed analysis showed that the reactor worked like a continuous flow system, and the performance was influenced by factors including light and temperature. The results also …

Nanofiber-Hydrogel Composite Scaffold Fabrication Methods For Peripheral Nerve Regeneration, Jacob Lee Carter

Theses and Dissertations

Nerve graft conduits (NGCs) are a rapidly advancing field for treating peripheral nerve injuries that aim to guide the growth of regenerating axons across damaged gaps. A more effective NGC can be manufactured by combining the use of nanofibers to act as guidewires within a 3-D hydrogel that imitates the extracellular matrix of nerve tissue. Several methods have been developed to embed aligned nanofibers in an ordered architecture within a hydrogel matrix. The first method involves layer-by-layer additive manufacturing to create NGCs with rows of polycaprolactone (PCL) nanofibers surrounded by a gelatin methacrylate (GelMe) hydrogel in a 3-D structure. A …

A Novel Perfused Contusion Spinal Cord Injury Model To Assess Rapid Mechanical Properties Changes After Blood Spinal Cord Barrier Breakdown, Laura De Marchi

Theses and Dissertations

Blood-spinal cord barrier (BSCB) disruption exacerbates the tissue damage caused by spinal cord injury (SCI), but the mechanisms and dynamics of how the barrier breakdown affects the mechanical properties of the tissue remain unclear. The perfused bovine ex vivo indentation injury model described here represents a new platform to investigate the short-term effects of altered blood flow and vascular permeability following traumatic spinal cord injury. Our results indicate that injured cords exhibit changes to bulk perfusion, as evidenced by laser speckle contrast imaging, in addition to decreased barrier function shortly after injury. Indentation tests that simultaneously simulate a crush injury …

Prostate Tissue Motion Tracking And Ultrasound Elastography Using Tissue Mechanics Derived Constraints, Tristan S. Curry

Electronic Thesis and Dissertation Repository

Current prostate cancer detection methods can be costly to obtain, such as magnetic resonance imaging, or lack specificity, such as a digital rectal exam. Ultrasound elastography, a method that can be used to develop and test algorithms that output stiffness, strain, and displacement data captured by ultrasound radio frequency readings, offers a potential solution to these challenges. An initial algorithm utilizing dynamic programming and analytic minimization estimates the radial and angular displacements from a pre- and post-compression data set to determine the required material properties. This estimate of displacements is then refined through an algorithm where incompressibility, Laplacian smoothing, and …

Towards The Development Of Wearable Tremor Suppression Systems Combining Functional Electrical Stimulation And Mechanical Actuation, Zahra Habibollahi

Electronic Thesis and Dissertation Repository

Parkinson's disease (PD), the second most prevalent neurological disorder, is characterized by motor and non-motor symptoms including tremor. Wearable tremor suppression devices (WTSDs), have shown promising results for tremor reduction, using functional electrical stimulation (FES) or active actuators. However, results and study procedures are not consistent in the literature. Although stimulations below and above motor threshold can suppress tremor, the mechanisms of the first is still not clear, and the second might lead to muscle fatigue and discomfort over time. While active actuators have shown better results for tremor suppression, they are often heavy and bulky for daily use. Lastly, …

Functional Near-Infrared Spectroscopy As A Bedside Neuroimaging Tool For Neonatal Brain Monitoring And Injury Characterization, Lingkai Tang

Electronic Thesis and Dissertation Repository

Early brain injury in neonates is a common neurological complication associated with high mortality rates and long-term morbidities. Two common types of injury are intraventricular hemorrhage (IVH) and hypoxic ischemic encephalopathy (HIE). Currently used clinical neuroimaging tools for diagnosing or monitoring the injury have limitations, e.g., cranial ultrasound is not for continuous monitoring of the evolution of injury so it could miss the optimal timing for intervention, and magnetic resonance imaging (MRI) is not very accessible for infants in neonatal intensive care unit. Functional near-infrared spectroscopy (fNIRS) can be an alternative imaging technique as it can be used at the …

Development And Validation Of The Motion Shirt: A Wearable Sensor System For Monitoring Upper Limb Motion In Shoulder Joint Replacement Patients, Sohrob Milanizadeh

Electronic Thesis and Dissertation Repository

Wearable sensors have become the study topic of researchers across various clinical disciplines, presenting promising avenues for their integration into clinical practices. Inertial measurement units (IMUs) have become significantly notable among the variety of sensor types, due to their non-invasive, and lightweight design. Moreover, they are increasingly used and applied in novel motion technologies since IMUs collect precise motion and orientation data when attached to specified body regions. In this dissertation, a wearable sensor system known as the Motion Shirt, equipped with 5 IMU sensors, has been developed and embedded into a flexible garment, enables continuous and accurate arms and …

Analysis Of Healthy Glenohumeral Arthrokinematics And Anatomic Shoulder Implant Subluxation Using 4dct, Kylie Kiera Paliani

Electronic Thesis and Dissertation Repository

The shoulder is the most mobile joint in the human body, with the glenohumeral joint specifically allowing a wide range of motion and a high incidence of instability due to its ability to translate, as well as rotate in its socket. However, the extent of translation in a healthy glenohumeral joint is not well-established. Additionally, it is unclear if subluxation correction after anatomic total shoulder arthroplasty (TSA) with posterior augmented glenoid (PAG) implants remains consistent throughout active motion. This thesis aimed to evaluate healthy glenohumeral arthrokinematics to benchmark normal joint proximity and translation, and to assess if a TSA with …

The Role Of Transverse Plane Malalignment In Posterolateral Corner Complex Injury, Larissa M. Madia

Electronic Thesis and Dissertation Repository

The posterolateral corner (PLC) is a complex of ligaments and soft tissues in the knee that primarily constrain external tibial rotation. Neglecting PLC injury is a contributing factor in graft failure following cruciate ligament reconstruction. This emphasizes the importance of understanding PLC injury mechanisms, considering their disposition to multi-ligament tears. The PLC can be damaged by hyperextension. Tibial torsion, a twisting of the tibia longitudinally relative to the femur, offsets the transverse knee alignment, consequently altering the loading of soft tissues. Therefore, the objective of this investigation was to determine if tibial torsion affects loading of PLC components during hyperextension, …

Design Of A Portable Fast Scan Cyclic Voltammetry Device Utilizing Pulse Width Modulation For Waveform Generation, Nora Szymkowski

Masters Theses

Fast Scan Cyclic Voltammetry (FSCV) is a widely used electrochemical technique for real-time measurement of the brain’s chemical messengers, including the molecule dopamine, with high temporal resolution. Currently the financial burden of performing FSCV is quite high, ranging from $8,000 to $20,000+ making the barrier to entry nearly insurmountable for laboratories and classrooms at small institutions. The purpose of this project was to develop a Do-It-Yourself (DIY), portable, and cost-effective FSCV system for use in laboratory and classroom settings. The project aimed to create a compact and cost-effective system that could be used by researchers and educators to study dopamine …

Engineered Nucleic-Acid Binding Intrinsically Disordered Proteins For Biomedical Applications, Telmo Diez Perez

Biomedical Engineering ETDs

This dissertation explores the use of intrinsically disorder proteins (IDPs) in biomedical applications related to the detection and biosensing of nucleic-acid species. We engineer several low critical solution temperature (LCST) nucleic-acid binding elastin-like polypeptides (ELPs) as model IDPs and study their potential in biomedical application via interactions with short single-stranded (ss) DNA, tRNA and viral RNAs. First, we engineer a simple polycationic ELP capable of recruiting DNA on demand in a DNA-protein-rich condensate via LLPS. Moreover, we develop a modified Flory-Huggins theory to quantify the partitioning of DNA and protein upon coacervate formation with and without salts. We then design …

Feasibility Study For The Application Of A Solar Powered Absorption Chilling System For Cooling Poultry Houses In Northwest Arkansas, Matthew James Kelly

Graduate Theses and Dissertations

This paper investigates the economic feasibility of utilizing a solar-powered absorption chiller to provide cooling for poultry houses in northwest Arkansas. An existing thermodynamic model of a poultry house was modified to account for cooling. A simulation was performed using actual weather data from Fayetteville, Arkansas for 26 flocks of broilers at four cooling capacities for the 2020, 2021, and 2022 calendar years. Based on the simulation, the savings from reduced electricity use for ventilation and the cost of the required absorption chiller and solar thermal array for an 8-house farm were calculated. While providing cooling was found to reduce …

Development Of A High-Throughput Screening Platform To Profile Gene Delivery And Transcriptional Control In Macrophages, Alexis Ivy

Graduate Theses and Dissertations

Macrophages are an important cell type in the body responsible for orchestrating the inflammatory response and return to homeostasis. Macrophages are often implicated in a multitude of disease pathologies including delayed wound healing, excessive fibrosis, autoimmune disease, and immunosuppression within the tumor microenvironment. Although macrophages have been targeted for therapeutic applications, success in utilizing them has remained elusive due to their relative ease of phenotype switching between inflammatory and anti-inflammatory. The challenge that remains is developing clinically relevant delivery vehicles that can target macrophages without causing a phenotypic switch counter-productive to the desired response. This is especially important when targeting …

Computer Vision Algorithms For Assessment Of Surgical Suturing Skill Using Hand And Needle Motion, Jianxin Gao

All Dissertations

Surgical suturing skill assessment is a crucial part of surgical education. Vascular surgery educators have developed a simulation-based examination called Fundamentals of Vascular Surgery, which includes a clock-face model for assessing open surgical suturing skills. The clock-face model, however, requires the valuable time of expert surgeons to determine examinees' skills. Moreover, expert surgeons have different judgments for appropriate sutures, which leads to inconsistent grading. These limitations motivate us to use sensors to measure examinees' needle motions and hand motions during the clock-face suturing exercises, and then use the measurements for objective suturing skill assessment.

To assess suturing skills based on …

Contribution Of Collagen Type I To The Mechanical Properties Of Myocardial Tissues At The Micron Level, Adam Baker

All Dissertations

Collagen is a critical component of the organization and one of the key factors contributing to the mechanical stability of the myocardium. Where cardiomyocytes actuate to contract the heart and deliver blood to the lungs and the entire body, the local collagen network must be able to support the mechanical needs of the heart by enhancing rigidity, reducing the mechanical responsibility of cells, and increasing compliance to add loading capacity during diastole. At an organ-wide level, this has been measured and modeled in many ways. At the tissue level, the mechanical properties have been evaluated using techniques such as bi-axial …

Sustainable Waste-To-Bioproducts Engineering Center Laboratory Safety Project, Claudine Mock

All Graduate Reports and Creative Projects, Fall 2023 to Present

Laboratory accidents are common in teaching and research labs; these accidents can be injurious or even fatal. The consequences of each type of laboratory accident are different based on the activities performed and the hazardous materials used in each facility. However, the most common issue related to laboratory accidents is the lack of proper safety measures (e.g., poor handling of hazardous materials, not reporting incidents immediately, etc.). This project aimed to establish and strengthen best practices and procedures to ensure laboratory safety at the Utah State University Sustainable Waste-to-Bioproducts Engineering Center. To achieve this goal, different practices and measures were …

The Role Of Kinases Signaling In Organogenesis, Fatemeh Nasehi

All Dissertations

Kinases are crucial regulators of organ development and differentiation. This thesis investi- gates the roles of TAK1, TGFbeta-Activate Kinase 1 (TAK1/Map3K7), and Akt3 kinases in skeletal, cardiac muscle, and cartilage. TAK1 is pivotal for the differentiation of various organ systems, including sinoatrial node and cartilage, and is responsible for phosphorylat- ing a diverse array of downstream kinases. We identified several novel proteins, including phospho-Akts, that are upregulated in response to TAK1 activation. We discovered severe Dilated Cardiomyopathy (DCM) and cartilage defects in Akt3 mutant mice. Although this mouse mutant has been studied for over two decades, we are the first …

Fluid-Solid Coupled Analysis Of Biological Samples In A Flow Chamber Using Optical Coherence Tomography, Reece W. Fratus

All Dissertations

Forces from fluid flow on a tissue or cellular boundary can drive remodeling processes through mechanotransduction pathways. In most cases, the exact mechanisms are not understood, such as in marine biofilm development or vascular remodeling. To gain a better understanding of these interactions, the flow profile at a solid boundary and the mechanical changes of that solid can be coupled together to determine the impact of fluid flow on mechanical remodeling. To achieve this, optical coherence tomography (OCT) is used to image the fluid and solid simultaneously. Fluid seeded with particles can be imaged and run through a particle image …

Novel Meta-Materials Application For Pressure-Offloading Of Diabetic Foot Ulcers, Kyle Walker

All Dissertations

Diabetes and its associated complications have seen their prevalence sharply rise in the United States over the past few decades. In fact, the prevalence of diagnosed diabetes has nearly doubled from 5.1% of the US population in 1988, to 9% in the most recent CDC report, which does not include the large percentage of the population with undiagnosed or prediabetes. Of this diabetic population, it is estimated that up to 34% will experience at least one foot ulcer during their lifetime. In worst case scenarios, these ulcers can become infected and eventually require amputation of a portion of, or the …

Hyperspectral Image Classification Of Bacteria Using A Deep Convolutional Neural Network, Bruce S. Vogelsberg Jr

All Theses

Hyperspectral imaging is a non-invasive imaging method capable of collecting both spatial and spectral information. However, because of the large volume of data collected, much of it is redundant or not useful for classification. Deep learning is a subset of machine learning that uses artificial neurons in a multilayered structure to learn representations from data. One of the main advantages of deep learning is the powerful feature extraction capabilities, which allow the model to learn both high- and low-level features. Convolutional neural networks are a type of deep learning model that have alternating convolutional and pooling layers capable of extracting …

Data Preprocessing And Machine Learning For Intracranial Electroencephalography, Mauricio Cespedes Tenorio

Electronic Thesis and Dissertation Repository

This thesis serves to address the problem of non-standardized preprocessing of intracranial electroencephalography (iEEG) recordings by implementing a software workflow that compiles some of the most common steps followed for the preparation of this type of data. This workflow improves the consistency, replicability, and ease of use of iEEG preprocessing, facilitating the replication and extension of previous studies and the combination of separately preprocessed inter-institutional datasets. Automatic detection of artifacts for iEEG data was also explored as a potential step to include in the preprocessing workflow. Despite training the models with cross-institutional data, poor performance was observed when tested on …

Development Of Four-Dimensional Computed Tomography Based Methods To Measure Shoulder Kinematics In Healthy Individuals And In Patients Following Total Shoulder Arthroplasty, James Hunter

Electronic Thesis and Dissertation Repository

Dynamic kinematics of the shoulder, particularly the interplay between the glenohumeral and scapulothoracic joints and the changes associated with aging, remain not fully understood. Current research often focuses on simple motions, neglecting more complex movements common in activities of daily living, such as internal rotation to reach behind the back. Post-total shoulder arthroplasty (TSA) surgery, many patients experience difficulties with internal rotation, affecting tasks like dressing and bathing. This dissertation employs four-dimensional computed tomography (4DCT) to enhance understanding of shoulder biomechanics and TSA outcomes by assessing dynamic shoulder kinematics in a healthy population and a post-implant population.

The first objective …

Computational Modelling Of Branching Arteriolar Networks Using Constrained Constructive Optimization, Yuki Bao

Electronic Thesis and Dissertation Repository

The microcirculation plays a critical role in tissue blood flow distribution and is thus a topic of importance for understanding organ pathophysiology. As an alternative to experimental investigations of microvasculature, this thesis introduces a computational algorithm based on constrained constructive optimization (CCO) which aims to generate visually and statistically realistic branching arteriolar network architecture in healthy skeletal muscle tissue. The algorithm includes a list of user-specified adjustable model parameters to generate networks characteristic of different skeletal muscle tissues. Geometric (including mean vessel diameters, lengths, and numbers of bifurcations per order, Horton’s Law ratios, and fractal dimension) and hemodynamic (Murray’s Law …

Statistical Modeling Of Knee Morphology And Material Properties Considering Diverse Populations, Gabrielle Jeannine Kindy

Electronic Theses and Dissertations

Total Knee Arthroplasty (TKA) is a widely performed surgical procedure aimed at alleviating pain and restoring function in patients with severe knee osteoarthritis. Despite its general success, disparities in postoperative outcomes have been observed across different racial and ethnic groups, with minority populations often experiencing less favorable results. One potential avenue for improving the generalizability of orthopaedic implants is using Statistical Shape and Intensity Models (SSIMs), which can be used to incorporate patient variability directly into the orthopaedic medical device development workflow through population-based finite element analysis.

This work aimed to construct an SSIM from a diverse subject set, incorporating …

Patient-Specific Musculoskeletal Modeling Of Total Shoulder Arthroplasty, Brendan M. Curran

Electronic Theses and Dissertations

Total shoulder arthroplasty (TSA) is often considered a surgery of last resort for patients with debilitating pathologies of the glenohumeral joint such as osteoarthritis, humeral head fracture, and advancing rotator cuff tears. TSA replaces the articulation between the humeral head and the glenoid fossa, with the goals of relieving pain and restoring function. Two types of total shoulder implants are available: Anatomic Total Shoulder Arthroplasty (aTSA) and Reverse Total Shoulder Arthroplasty (rTSA). TSA survivorship is lower than that of the survivorship seen in total knee and hip replacements [1]. Shoulder muscle moment arms and lines of action have been measured …

Shape Memory Alloy Capsule Micropump For Drug Delivery Applications, Youssef Mohamed Kotb

Theses and Dissertations

Implantable drug delivery devices have many benefits over traditional drug administration techniques and have attracted a lot of attention in recent years. By delivering the medication directly to the tissue, they enable the use of larger localized concentrations, enhancing the efficacy of the treatment. Passive-release drug delivery systems, one of the various ways to provide medication, are great inventions. However, they cannot dispense the medication on demand since they are nonprogrammable. Therefore, active actuators are more advantageous in delivery applications. Smart material actuators, however, have greatly increased in popularity for manufacturing wearable and implantable micropumps due to their high energy …

Porous Titanium Alloy Constructs For Mandibular Reconstruction, Khaled Marwan Anis Hijazi

Electronic Thesis and Dissertation Repository

The goal of this study was to develop and validate finite element analysis (FEA) models to predict static and dynamic mechanical properties of porous titanium 6-aluminum 4-vanadium (Ti6Al4V) constructs. Dumbbell-shaped and square prism porous computer models were created with simple cubic unit cell structures with a size of 1 mm and strut thicknesses varying between 250 and 650 µm. The pore diameters ranged between 350 and 750 µm. Constructs were manufactured using selective laser melting (SLM). These constructs were scanned using computed tomography (CT) and scanning electron microscopy (SEM). These constructs were then tested under tensile and flexural static loading …

Preclinical Examination Of A Nerve Specific Fluorophore Using Ex Vivo Human Tissues, Logan Michael Bateman

Dartmouth College Master’s Theses

Fluorescence-guided surgery (FGS) is a nascent field which seeks to improve patient safety and surgical outcomes using fluorescent agents known as fluorophores. Fluorophores are molecules which upon excitation with a specific wavelength of light emit a photon of a specific wavelength which can be detected using a modified camera system. Creation and translation of a fluorophore for clinical use is a costly, laborious, and time intensive process. Only a handful of fluorophores have received FDA approval and they required multiple years of tightly regulated clinical trials. Prior to these first-in-human studies these agents are subject to a litany of preclinical …

A Pilot Study Comparing Muscle Activation And Kinematic Parameters Between Professional And Non-Professional Tennis Players, Anton S. Petrenko

Masters Theses

Tennis, a widely played sport across various age and skill groups, prompts continual skill improvement among competitive players seeking a competitive edge. This study explores two approaches for enhancing playing style: motion capture (MoCap) and surface electromyographic (sEMG) signals. The study addresses a gap in simultaneous examination of MoCap and entire dominant leg muscle activation, particularly concerning the influence of skill level and gender on various tennis strokes. To fill this void, the research records and analyzes MoCap and dominant leg sEMG data during serves and strokes on both court sides. The hypothesis posits differences in muscle activation and body …