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Full-Text Articles in Engineering
Nonuniform Sampling-Based Breast Cancer Classification, Santiago Posso
Nonuniform Sampling-Based Breast Cancer Classification, Santiago Posso
Theses and Dissertations--Electrical and Computer Engineering
The emergence of deep learning models and their success in visual object recognition have fueled the medical imaging community's interest in integrating these algorithms to improve medical diagnosis. However, natural images, which have been the main focus of deep learning models and mammograms, exhibit fundamental differences. First, breast tissue abnormalities are often smaller than salient objects in natural images. Second, breast images have significantly higher resolutions but are generally heavily downsampled to fit these images to deep learning models. Models that handle high-resolution mammograms require many exams and complex architectures. Additionally, spatially resizing mammograms leads to losing discriminative details essential …
Language Models For Rare Disease Information Extraction: Empirical Insights And Model Comparisons, Shashank Gupta
Language Models For Rare Disease Information Extraction: Empirical Insights And Model Comparisons, Shashank Gupta
Theses and Dissertations--Computer Science
End-to-end relation extraction (E2ERE) is a crucial task in natural language processing (NLP) that involves identifying and classifying semantic relationships between entities in text. This thesis compares three paradigms for end-to-end relation extraction (E2ERE) in biomedicine, focusing on rare diseases with discontinuous and nested entities. We evaluate Named Entity Recognition (NER) to Relation Extraction (RE) pipelines, sequence-to-sequence models, and generative pre-trained transformer (GPT) models using the RareDis information extraction dataset. Our findings indicate that pipeline models are the most effective, followed closely by sequence-to-sequence models. GPT models, despite having eight times as many parameters, perform worse than sequence-to-sequence models and …